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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:675664..677614 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G02230.1 vs.
Match: EWM27543.1 (Ankyrin repeat-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 273.1 bits (697), Expect = 2.000e-69 Identity = 185/389 (47.56%), Postives = 227/389 (58.35%), Query Frame = 0
Query: 27 QGQDDDDDDIGFLAKLLREEEDHHHHQQQQQQVEEE-----------EEGSSHLDKPQGAQKEDDEEEEGNTSTSHDPALKIACVKSILYEPQQEGEHENTTTAASASLAAVPFRRPQTYNDNDLFRSLQLMDFESAQALLDYDPELMVSRDEDFAQPLAVAVEARFEKNVKYLLHLGCPLQEVDGRGFSALHIAVEAFRDMPFLLRYLLQYKGLDINSRVPPLHGVCPLHLAEDERVLKLLLGCGADPSMLVPVQVGRRRKDGEEGKEEEEDVLGRVERTWPRGKGKKKARFLLTRLSPYQSYTLAKLRFITHMYC------------------SCRFSSSSSFL------QSSILTAR--AKIIDARLDEDSELLDLQKEDKNEEEA 379
Q QDD+DDD+ LAKLLREEED + +G + +P G K E +S++ QE E + A A VP RRP+ YNDNDLFRSLQLMDFES QALL++D EL+ +RDEDFAQPLAVAVEARFE+ VK+LLHL CPL EVDGRG+SALH+AVE F DMPFLLRYLLQ+ G+DIN+R PP G CPLHLA R L+LLL CGADP+ VP Q ++G EG +VL VERTWP+ + K KARF+L LSPY S+ +AKL FI+ MY S RF S S + S LT R A I +ARLD +E ++ K+D++ +EA
Sbjct: 12 QVQDDEDDDMVLLAKLLREEEDREQESLFASDRRPDPISTLPKGFAGNDGVKGMTRPHGVAKRQRVESSAKAKNR----------RSVV---DQEEEEDWIRVAD----AVVPIRRPKIYNDNDLFRSLQLMDFESVQALLEHDRELVSARDEDFAQPLAVAVEARFERGVKFLLHLKCPLLEVDGRGYSALHLAVEVFADMPFLLRYLLQHGGMDINARAPPSLGPCPLHLASGTRALRLLLACGADPT--VPAQ---NEREGSEG----GNVLAWVERTWPQTREKTKARFMLACLSPYHSFVVAKLCFISRMYAVPGAPGAAPAANPCTGARSARFPPSPSLVAVQARPPSHSLTHRIGAMIANARLDGQTEEVNPLKDDEHSDEA 374
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G02230.1 ID=NO09G02230.1|Name=NO09G02230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1951bp CGACAGGCGTGACGGGATCAGCCCCTTCACCATGATCTCCCCTCCACTCT GCGTCTGATGGAGCCTCCCCACTCCAAGCGGCCTCTCTCGGCCCAGACCG CATTGCTGTCGCCCAAACGCCAGTGCCAGTACACCCAAGGCCAGGATGAT GACGACGATGACATTGGTTTCCTTGCCAAGCTTTTGAGGGAGGAAGAGGA TCATCATCATCATCAGCAGCAGCAGCAGCAGGTGGAGGAGGAGGAGGAGG GGTCCTCGCACCTTGACAAGCCTCAAGGAGCCCAGAAGGAGGACGACGAG GAGGAGGAAGGGAACACATCAACATCCCATGACCCGGCCTTAAAAATTGC TTGCGTCAAGTCAATCTTGTACGAGCCCCAACAAGAAGGGGAGCACGAAA ATACCACCACCGCTGCTTCCGCTTCCCTCGCCGCTGTTCCCTTTCGTCGG CCCCAAACCTACAACGACAATGACTTGTTCCGCTCTCTACAACTCATGGA CTTTGAAAGTGCTCAGGCCTTGCTTGATTATGACCCCGAGTTGATGGTCT CTAGAGACGAGGACTTCGCTCAGCCCTTGGCTGTGGCAGTCGAAGCCCGT TTTGAAAAAAACGTCAAGTATCTTTTGCATCTTGGGTGTCCTTTGCAGGA AGTCGACGGACGGGGCTTCAGTGCTCTTCACATAGCAGTGGAAGCCTTTA GAGACATGCCTTTTTTGTTGAGGTATTTGTTGCAATACAAAGGGCTGGAC ATCAATTCGCGTGTGCCGCCTTTGCACGGGGTGTGTCCGCTTCACCTTGC CGAGGACGAGCGGGTTTTAAAACTGCTTTTGGGTTGTGGGGCGGACCCTT CCATGCTGGTGCCGGTGCAGGTTGGGAGGAGGAGAAAGGACGGGGAGGAG GGCAAGGAAGAGGAGGAGGATGTGTTGGGCCGTGTGGAGCGAACTTGGCC TCGGGGGAAGGGCAAGAAAAAAGCTCGTTTCTTGCTCACGCGCTTGTCGC CGTACCAAAGCTACACGCTGGCCAAGCTGCGCTTTATCACACACATGTAT TGTTCCTGCCGATTCTCTTCCTCCTCATCCTTTCTGCAGTCCTCCATTCT CACGGCTAGAGCAAAAATAATCGATGCACGTCTGGACGAGGACTCGGAGT TGCTGGACCTCCAGAAAGAGGACAAGAACGAAGAAGAGGCCGACATTTGG TGCAAAGAAGAGGTCAAAGGCCAAGTATTTAGCTTTGTCGAAAATGGACA TCTGTACCTTGCACGGAACAGGAGTACCGGCCTTGATCATCCTCCTCCCC TGGCCGCTGTTGCTGTTGCTGCAGCTGCTTCTGGTTCTTCTTCTCCATCA CGGTCTCCCCCGCGGCCGGCAGCAGCAGCCGCCGTGGGCGGAAGCAATGG TAATGGAGAGAAGAAAGGCAGACCGATCCCTCCTCATCCGGCGGGCTTGT GCCCACTTTCAGTTTTGAAAGCTGCGAGAGCAGATTTTTTTCTGGTAAGT AAGTATAAGGAGGAGTATGAGGGGGAGGGAAAGATGGCCGCATACGACAA TGGCAGCAATAGCTCCAGCAGCGTCAGCAATAGCTCCAGGAGCAGCAGCG GTAGGATGGATGGGGGGAAATGGGTGTTGTTGCCAGCTTTGCCAAGGGTC GACATTCATTGGAGGGAGCCGAATGGGGGGAAGGAGAACGAGGGAGGGGA GGGCGGGAAGAGCGGCATGGCTGCTGCTGTGTTGCAGATGCTTGTTCATG AGGTGAGGGATGAGGGTGTGGTGGATGCGCTTCAGGCCATGCTTTGGACT GGGATGGGGAAGAAAGTATGAAAGTGTCAGGGTGTTTTTTAAGGTGTGCG GAGGCAGACAGGCGGAAGACAATGAGAAACGGGACATGGGAAGATATGTA ATCGATGTACAGAGAAGTGTTTGTAAACTGAACAAAGAAAGCTGATGGGT C back to topprotein sequence of NO09G02230.1 >NO09G02230.1-protein ID=NO09G02230.1-protein|Name=NO09G02230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=588bp MEPPHSKRPLSAQTALLSPKRQCQYTQGQDDDDDDIGFLAKLLREEEDHH HHQQQQQQVEEEEEGSSHLDKPQGAQKEDDEEEEGNTSTSHDPALKIACV KSILYEPQQEGEHENTTTAASASLAAVPFRRPQTYNDNDLFRSLQLMDFE SAQALLDYDPELMVSRDEDFAQPLAVAVEARFEKNVKYLLHLGCPLQEVD GRGFSALHIAVEAFRDMPFLLRYLLQYKGLDINSRVPPLHGVCPLHLAED ERVLKLLLGCGADPSMLVPVQVGRRRKDGEEGKEEEEDVLGRVERTWPRG KGKKKARFLLTRLSPYQSYTLAKLRFITHMYCSCRFSSSSSFLQSSILTA RAKIIDARLDEDSELLDLQKEDKNEEEADIWCKEEVKGQVFSFVENGHLY LARNRSTGLDHPPPLAAVAVAAAASGSSSPSRSPPRPAAAAAVGGSNGNG EKKGRPIPPHPAGLCPLSVLKAARADFFLVSKYKEEYEGEGKMAAYDNGS NSSSSVSNSSRSSSGRMDGGKWVLLPALPRVDIHWREPNGGKENEGGEGG KSGMAAAVLQMLVHEVRDEGVVDALQAMLWTGMGKKV* back to topmRNA from alignment at chr9:675664..677614- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G02230.1 ID=NO09G02230.1|Name=NO09G02230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1951bp|location=Sequence derived from alignment at chr9:675664..677614- (Nannochloropsis oceanica) CGACAGGCGTGACGGGATCAGCCCCTTCACCATGATCTCCCCTCCACTCT
GCGTCTGATGGAGCCTCCCCACTCCAAGCGGCCTCTCTCGGCCCAGACCG
CATTGCTGTCGCCCAAACGCCAGTGCCAGTACACCCAAGGCCAGGATGAT
GACGACGATGACATTGGTTTCCTTGCCAAGCTTTTGAGGGAGGAAGAGGA
TCATCATCATCATCAGCAGCAGCAGCAGCAGGTGGAGGAGGAGGAGGAGG
GGTCCTCGCACCTTGACAAGCCTCAAGGAGCCCAGAAGGAGGACGACGAG
GAGGAGGAAGGGAACACATCAACATCCCATGACCCGGCCTTAAAAATTGC
TTGCGTCAAGTCAATCTTGTACGAGCCCCAACAAGAAGGGGAGCACGAAA
ATACCACCACCGCTGCTTCCGCTTCCCTCGCCGCTGTTCCCTTTCGTCGG
CCCCAAACCTACAACGACAATGACTTGTTCCGCTCTCTACAACTCATGGA
CTTTGAAAGTGCTCAGGCCTTGCTTGATTATGACCCCGAGTTGATGGTCT
CTAGAGACGAGGACTTCGCTCAGCCCTTGGCTGTGGCAGTCGAAGCCCGT
TTTGAAAAAAACGTCAAGTATCTTTTGCATCTTGGGTGTCCTTTGCAGGA
AGTCGACGGACGGGGCTTCAGTGCTCTTCACATAGCAGTGGAAGCCTTTA
GAGACATGCCTTTTTTGTTGAGGTATTTGTTGCAATACAAAGGGCTGGAC
ATCAATTCGCGTGTGCCGCCTTTGCACGGGGTGTGTCCGCTTCACCTTGC
CGAGGACGAGCGGGTTTTAAAACTGCTTTTGGGTTGTGGGGCGGACCCTT
CCATGCTGGTGCCGGTGCAGGTTGGGAGGAGGAGAAAGGACGGGGAGGAG
GGCAAGGAAGAGGAGGAGGATGTGTTGGGCCGTGTGGAGCGAACTTGGCC
TCGGGGGAAGGGCAAGAAAAAAGCTCGTTTCTTGCTCACGCGCTTGTCGC
CGTACCAAAGCTACACGCTGGCCAAGCTGCGCTTTATCACACACATGTAT
TGTTCCTGCCGATTCTCTTCCTCCTCATCCTTTCTGCAGTCCTCCATTCT
CACGGCTAGAGCAAAAATAATCGATGCACGTCTGGACGAGGACTCGGAGT
TGCTGGACCTCCAGAAAGAGGACAAGAACGAAGAAGAGGCCGACATTTGG
TGCAAAGAAGAGGTCAAAGGCCAAGTATTTAGCTTTGTCGAAAATGGACA
TCTGTACCTTGCACGGAACAGGAGTACCGGCCTTGATCATCCTCCTCCCC
TGGCCGCTGTTGCTGTTGCTGCAGCTGCTTCTGGTTCTTCTTCTCCATCA
CGGTCTCCCCCGCGGCCGGCAGCAGCAGCCGCCGTGGGCGGAAGCAATGG
TAATGGAGAGAAGAAAGGCAGACCGATCCCTCCTCATCCGGCGGGCTTGT
GCCCACTTTCAGTTTTGAAAGCTGCGAGAGCAGATTTTTTTCTGGTAAGT
AAGTATAAGGAGGAGTATGAGGGGGAGGGAAAGATGGCCGCATACGACAA
TGGCAGCAATAGCTCCAGCAGCGTCAGCAATAGCTCCAGGAGCAGCAGCG
GTAGGATGGATGGGGGGAAATGGGTGTTGTTGCCAGCTTTGCCAAGGGTC
GACATTCATTGGAGGGAGCCGAATGGGGGGAAGGAGAACGAGGGAGGGGA
GGGCGGGAAGAGCGGCATGGCTGCTGCTGTGTTGCAGATGCTTGTTCATG
AGGTGAGGGATGAGGGTGTGGTGGATGCGCTTCAGGCCATGCTTTGGACT
GGGATGGGGAAGAAAGTATGAAAGTGTCAGGGTGTTTTTTAAGGTGTGCG
GAGGCAGACAGGCGGAAGACAATGAGAAACGGGACATGGGAAGATATGTA
ATCGATGTACAGAGAAGTGTTTGTAAACTGAACAAAGAAAGCTGATGGGT
C back to topCoding sequence (CDS) from alignment at chr9:675664..677614- >NO09G02230.1 ID=NO09G02230.1|Name=NO09G02230.1|organism=Nannochloropsis oceanica|type=CDS|length=1764bp|location=Sequence derived from alignment at chr9:675664..677614- (Nannochloropsis oceanica) ATGGAGCCTCCCCACTCCAAGCGGCCTCTCTCGGCCCAGACCGCATTGCT GTCGCCCAAACGCCAGTGCCAGTACACCCAAGGCCAGGATGATGACGACG ATGACATTGGTTTCCTTGCCAAGCTTTTGAGGGAGGAAGAGGATCATCAT CATCATCAGCAGCAGCAGCAGCAGGTGGAGGAGGAGGAGGAGGGGTCCTC GCACCTTGACAAGCCTCAAGGAGCCCAGAAGGAGGACGACGAGGAGGAGG AAGGGAACACATCAACATCCCATGACCCGGCCTTAAAAATTGCTTGCGTC AAGTCAATCTTGTACGAGCCCCAACAAGAAGGGGAGCACGAAAATACCAC CACCGCTGCTTCCGCTTCCCTCGCCGCTGTTCCCTTTCGTCGGCCCCAAA CCTACAACGACAATGACTTGTTCCGCTCTCTACAACTCATGGACTTTGAA AGTGCTCAGGCCTTGCTTGATTATGACCCCGAGTTGATGGTCTCTAGAGA CGAGGACTTCGCTCAGCCCTTGGCTGTGGCAGTCGAAGCCCGTTTTGAAA AAAACGTCAAGTATCTTTTGCATCTTGGGTGTCCTTTGCAGGAAGTCGAC GGACGGGGCTTCAGTGCTCTTCACATAGCAGTGGAAGCCTTTAGAGACAT GCCTTTTTTGTTGAGGTATTTGTTGCAATACAAAGGGCTGGACATCAATT CGCGTGTGCCGCCTTTGCACGGGGTGTGTCCGCTTCACCTTGCCGAGGAC GAGCGGGTTTTAAAACTGCTTTTGGGTTGTGGGGCGGACCCTTCCATGCT GGTGCCGGTGCAGGTTGGGAGGAGGAGAAAGGACGGGGAGGAGGGCAAGG AAGAGGAGGAGGATGTGTTGGGCCGTGTGGAGCGAACTTGGCCTCGGGGG AAGGGCAAGAAAAAAGCTCGTTTCTTGCTCACGCGCTTGTCGCCGTACCA AAGCTACACGCTGGCCAAGCTGCGCTTTATCACACACATGTATTGTTCCT GCCGATTCTCTTCCTCCTCATCCTTTCTGCAGTCCTCCATTCTCACGGCT AGAGCAAAAATAATCGATGCACGTCTGGACGAGGACTCGGAGTTGCTGGA CCTCCAGAAAGAGGACAAGAACGAAGAAGAGGCCGACATTTGGTGCAAAG AAGAGGTCAAAGGCCAAGTATTTAGCTTTGTCGAAAATGGACATCTGTAC CTTGCACGGAACAGGAGTACCGGCCTTGATCATCCTCCTCCCCTGGCCGC TGTTGCTGTTGCTGCAGCTGCTTCTGGTTCTTCTTCTCCATCACGGTCTC CCCCGCGGCCGGCAGCAGCAGCCGCCGTGGGCGGAAGCAATGGTAATGGA GAGAAGAAAGGCAGACCGATCCCTCCTCATCCGGCGGGCTTGTGCCCACT TTCAGTTTTGAAAGCTGCGAGAGCAGATTTTTTTCTGGTAAGTAAGTATA AGGAGGAGTATGAGGGGGAGGGAAAGATGGCCGCATACGACAATGGCAGC AATAGCTCCAGCAGCGTCAGCAATAGCTCCAGGAGCAGCAGCGGTAGGAT GGATGGGGGGAAATGGGTGTTGTTGCCAGCTTTGCCAAGGGTCGACATTC ATTGGAGGGAGCCGAATGGGGGGAAGGAGAACGAGGGAGGGGAGGGCGGG AAGAGCGGCATGGCTGCTGCTGTGTTGCAGATGCTTGTTCATGAGGTGAG GGATGAGGGTGTGGTGGATGCGCTTCAGGCCATGCTTTGGACTGGGATGG GGAAGAAAGTATGA back to top
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