NO09G02230.1, NO09G02230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02230.1
Unique NameNO09G02230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1951
Alignment locationchr9:675664..677614 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:675664..677614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G02230.1 vs.
Match: EWM27543.1 (Ankyrin repeat-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 273.1 bits (697), Expect = 2.000e-69
Identity = 185/389 (47.56%), Postives = 227/389 (58.35%), Query Frame = 0
Query:   27 QGQDDDDDDIGFLAKLLREEEDHHHHQQQQQQVEEE-----------EEGSSHLDKPQGAQKEDDEEEEGNTSTSHDPALKIACVKSILYEPQQEGEHENTTTAASASLAAVPFRRPQTYNDNDLFRSLQLMDFESAQALLDYDPELMVSRDEDFAQPLAVAVEARFEKNVKYLLHLGCPLQEVDGRGFSALHIAVEAFRDMPFLLRYLLQYKGLDINSRVPPLHGVCPLHLAEDERVLKLLLGCGADPSMLVPVQVGRRRKDGEEGKEEEEDVLGRVERTWPRGKGKKKARFLLTRLSPYQSYTLAKLRFITHMYC------------------SCRFSSSSSFL------QSSILTAR--AKIIDARLDEDSELLDLQKEDKNEEEA 379
            Q QDD+DDD+  LAKLLREEED             +            +G   + +P G  K    E                  +S++    QE E +    A     A VP RRP+ YNDNDLFRSLQLMDFES QALL++D EL+ +RDEDFAQPLAVAVEARFE+ VK+LLHL CPL EVDGRG+SALH+AVE F DMPFLLRYLLQ+ G+DIN+R PP  G CPLHLA   R L+LLL CGADP+  VP Q     ++G EG     +VL  VERTWP+ + K KARF+L  LSPY S+ +AKL FI+ MY                   S RF  S S +       S  LT R  A I +ARLD  +E ++  K+D++ +EA
Sbjct:   12 QVQDDEDDDMVLLAKLLREEEDREQESLFASDRRPDPISTLPKGFAGNDGVKGMTRPHGVAKRQRVESSAKAKNR----------RSVV---DQEEEEDWIRVAD----AVVPIRRPKIYNDNDLFRSLQLMDFESVQALLEHDRELVSARDEDFAQPLAVAVEARFERGVKFLLHLKCPLLEVDGRGYSALHLAVEVFADMPFLLRYLLQHGGMDINARAPPSLGPCPLHLASGTRALRLLLACGADPT--VPAQ---NEREGSEG----GNVLAWVERTWPQTREKTKARFMLACLSPYHSFVVAKLCFISRMYAVPGAPGAAPAANPCTGARSARFPPSPSLVAVQARPPSHSLTHRIGAMIANARLDGQTEEVNPLKDDEHSDEA 374          
The following BLAST results are available for this feature:
BLAST of NO09G02230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27543.12.000e-6947.56Ankyrin repeat-containing protein [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02230NO09G02230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02230.1NO09G02230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02230.1.cds1NO09G02230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02230.1 ID=NO09G02230.1|Name=NO09G02230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1951bp
CGACAGGCGTGACGGGATCAGCCCCTTCACCATGATCTCCCCTCCACTCT
GCGTCTGATGGAGCCTCCCCACTCCAAGCGGCCTCTCTCGGCCCAGACCG
CATTGCTGTCGCCCAAACGCCAGTGCCAGTACACCCAAGGCCAGGATGAT
GACGACGATGACATTGGTTTCCTTGCCAAGCTTTTGAGGGAGGAAGAGGA
TCATCATCATCATCAGCAGCAGCAGCAGCAGGTGGAGGAGGAGGAGGAGG
GGTCCTCGCACCTTGACAAGCCTCAAGGAGCCCAGAAGGAGGACGACGAG
GAGGAGGAAGGGAACACATCAACATCCCATGACCCGGCCTTAAAAATTGC
TTGCGTCAAGTCAATCTTGTACGAGCCCCAACAAGAAGGGGAGCACGAAA
ATACCACCACCGCTGCTTCCGCTTCCCTCGCCGCTGTTCCCTTTCGTCGG
CCCCAAACCTACAACGACAATGACTTGTTCCGCTCTCTACAACTCATGGA
CTTTGAAAGTGCTCAGGCCTTGCTTGATTATGACCCCGAGTTGATGGTCT
CTAGAGACGAGGACTTCGCTCAGCCCTTGGCTGTGGCAGTCGAAGCCCGT
TTTGAAAAAAACGTCAAGTATCTTTTGCATCTTGGGTGTCCTTTGCAGGA
AGTCGACGGACGGGGCTTCAGTGCTCTTCACATAGCAGTGGAAGCCTTTA
GAGACATGCCTTTTTTGTTGAGGTATTTGTTGCAATACAAAGGGCTGGAC
ATCAATTCGCGTGTGCCGCCTTTGCACGGGGTGTGTCCGCTTCACCTTGC
CGAGGACGAGCGGGTTTTAAAACTGCTTTTGGGTTGTGGGGCGGACCCTT
CCATGCTGGTGCCGGTGCAGGTTGGGAGGAGGAGAAAGGACGGGGAGGAG
GGCAAGGAAGAGGAGGAGGATGTGTTGGGCCGTGTGGAGCGAACTTGGCC
TCGGGGGAAGGGCAAGAAAAAAGCTCGTTTCTTGCTCACGCGCTTGTCGC
CGTACCAAAGCTACACGCTGGCCAAGCTGCGCTTTATCACACACATGTAT
TGTTCCTGCCGATTCTCTTCCTCCTCATCCTTTCTGCAGTCCTCCATTCT
CACGGCTAGAGCAAAAATAATCGATGCACGTCTGGACGAGGACTCGGAGT
TGCTGGACCTCCAGAAAGAGGACAAGAACGAAGAAGAGGCCGACATTTGG
TGCAAAGAAGAGGTCAAAGGCCAAGTATTTAGCTTTGTCGAAAATGGACA
TCTGTACCTTGCACGGAACAGGAGTACCGGCCTTGATCATCCTCCTCCCC
TGGCCGCTGTTGCTGTTGCTGCAGCTGCTTCTGGTTCTTCTTCTCCATCA
CGGTCTCCCCCGCGGCCGGCAGCAGCAGCCGCCGTGGGCGGAAGCAATGG
TAATGGAGAGAAGAAAGGCAGACCGATCCCTCCTCATCCGGCGGGCTTGT
GCCCACTTTCAGTTTTGAAAGCTGCGAGAGCAGATTTTTTTCTGGTAAGT
AAGTATAAGGAGGAGTATGAGGGGGAGGGAAAGATGGCCGCATACGACAA
TGGCAGCAATAGCTCCAGCAGCGTCAGCAATAGCTCCAGGAGCAGCAGCG
GTAGGATGGATGGGGGGAAATGGGTGTTGTTGCCAGCTTTGCCAAGGGTC
GACATTCATTGGAGGGAGCCGAATGGGGGGAAGGAGAACGAGGGAGGGGA
GGGCGGGAAGAGCGGCATGGCTGCTGCTGTGTTGCAGATGCTTGTTCATG
AGGTGAGGGATGAGGGTGTGGTGGATGCGCTTCAGGCCATGCTTTGGACT
GGGATGGGGAAGAAAGTATGAAAGTGTCAGGGTGTTTTTTAAGGTGTGCG
GAGGCAGACAGGCGGAAGACAATGAGAAACGGGACATGGGAAGATATGTA
ATCGATGTACAGAGAAGTGTTTGTAAACTGAACAAAGAAAGCTGATGGGT
C
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protein sequence of NO09G02230.1

>NO09G02230.1-protein ID=NO09G02230.1-protein|Name=NO09G02230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=588bp
MEPPHSKRPLSAQTALLSPKRQCQYTQGQDDDDDDIGFLAKLLREEEDHH
HHQQQQQQVEEEEEGSSHLDKPQGAQKEDDEEEEGNTSTSHDPALKIACV
KSILYEPQQEGEHENTTTAASASLAAVPFRRPQTYNDNDLFRSLQLMDFE
SAQALLDYDPELMVSRDEDFAQPLAVAVEARFEKNVKYLLHLGCPLQEVD
GRGFSALHIAVEAFRDMPFLLRYLLQYKGLDINSRVPPLHGVCPLHLAED
ERVLKLLLGCGADPSMLVPVQVGRRRKDGEEGKEEEEDVLGRVERTWPRG
KGKKKARFLLTRLSPYQSYTLAKLRFITHMYCSCRFSSSSSFLQSSILTA
RAKIIDARLDEDSELLDLQKEDKNEEEADIWCKEEVKGQVFSFVENGHLY
LARNRSTGLDHPPPLAAVAVAAAASGSSSPSRSPPRPAAAAAVGGSNGNG
EKKGRPIPPHPAGLCPLSVLKAARADFFLVSKYKEEYEGEGKMAAYDNGS
NSSSSVSNSSRSSSGRMDGGKWVLLPALPRVDIHWREPNGGKENEGGEGG
KSGMAAAVLQMLVHEVRDEGVVDALQAMLWTGMGKKV*
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mRNA from alignment at chr9:675664..677614-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02230.1 ID=NO09G02230.1|Name=NO09G02230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1951bp|location=Sequence derived from alignment at chr9:675664..677614- (Nannochloropsis oceanica)
CGACAGGCGTGACGGGATCAGCCCCTTCACCATGATCTCCCCTCCACTCT GCGTCTGATGGAGCCTCCCCACTCCAAGCGGCCTCTCTCGGCCCAGACCG CATTGCTGTCGCCCAAACGCCAGTGCCAGTACACCCAAGGCCAGGATGAT GACGACGATGACATTGGTTTCCTTGCCAAGCTTTTGAGGGAGGAAGAGGA TCATCATCATCATCAGCAGCAGCAGCAGCAGGTGGAGGAGGAGGAGGAGG GGTCCTCGCACCTTGACAAGCCTCAAGGAGCCCAGAAGGAGGACGACGAG GAGGAGGAAGGGAACACATCAACATCCCATGACCCGGCCTTAAAAATTGC TTGCGTCAAGTCAATCTTGTACGAGCCCCAACAAGAAGGGGAGCACGAAA ATACCACCACCGCTGCTTCCGCTTCCCTCGCCGCTGTTCCCTTTCGTCGG CCCCAAACCTACAACGACAATGACTTGTTCCGCTCTCTACAACTCATGGA CTTTGAAAGTGCTCAGGCCTTGCTTGATTATGACCCCGAGTTGATGGTCT CTAGAGACGAGGACTTCGCTCAGCCCTTGGCTGTGGCAGTCGAAGCCCGT TTTGAAAAAAACGTCAAGTATCTTTTGCATCTTGGGTGTCCTTTGCAGGA AGTCGACGGACGGGGCTTCAGTGCTCTTCACATAGCAGTGGAAGCCTTTA GAGACATGCCTTTTTTGTTGAGGTATTTGTTGCAATACAAAGGGCTGGAC ATCAATTCGCGTGTGCCGCCTTTGCACGGGGTGTGTCCGCTTCACCTTGC CGAGGACGAGCGGGTTTTAAAACTGCTTTTGGGTTGTGGGGCGGACCCTT CCATGCTGGTGCCGGTGCAGGTTGGGAGGAGGAGAAAGGACGGGGAGGAG GGCAAGGAAGAGGAGGAGGATGTGTTGGGCCGTGTGGAGCGAACTTGGCC TCGGGGGAAGGGCAAGAAAAAAGCTCGTTTCTTGCTCACGCGCTTGTCGC CGTACCAAAGCTACACGCTGGCCAAGCTGCGCTTTATCACACACATGTAT TGTTCCTGCCGATTCTCTTCCTCCTCATCCTTTCTGCAGTCCTCCATTCT CACGGCTAGAGCAAAAATAATCGATGCACGTCTGGACGAGGACTCGGAGT TGCTGGACCTCCAGAAAGAGGACAAGAACGAAGAAGAGGCCGACATTTGG TGCAAAGAAGAGGTCAAAGGCCAAGTATTTAGCTTTGTCGAAAATGGACA TCTGTACCTTGCACGGAACAGGAGTACCGGCCTTGATCATCCTCCTCCCC TGGCCGCTGTTGCTGTTGCTGCAGCTGCTTCTGGTTCTTCTTCTCCATCA CGGTCTCCCCCGCGGCCGGCAGCAGCAGCCGCCGTGGGCGGAAGCAATGG TAATGGAGAGAAGAAAGGCAGACCGATCCCTCCTCATCCGGCGGGCTTGT GCCCACTTTCAGTTTTGAAAGCTGCGAGAGCAGATTTTTTTCTGGTAAGT AAGTATAAGGAGGAGTATGAGGGGGAGGGAAAGATGGCCGCATACGACAA TGGCAGCAATAGCTCCAGCAGCGTCAGCAATAGCTCCAGGAGCAGCAGCG GTAGGATGGATGGGGGGAAATGGGTGTTGTTGCCAGCTTTGCCAAGGGTC GACATTCATTGGAGGGAGCCGAATGGGGGGAAGGAGAACGAGGGAGGGGA GGGCGGGAAGAGCGGCATGGCTGCTGCTGTGTTGCAGATGCTTGTTCATG AGGTGAGGGATGAGGGTGTGGTGGATGCGCTTCAGGCCATGCTTTGGACT GGGATGGGGAAGAAAGTATGAAAGTGTCAGGGTGTTTTTTAAGGTGTGCG GAGGCAGACAGGCGGAAGACAATGAGAAACGGGACATGGGAAGATATGTA ATCGATGTACAGAGAAGTGTTTGTAAACTGAACAAAGAAAGCTGATGGGT C
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Coding sequence (CDS) from alignment at chr9:675664..677614-

>NO09G02230.1 ID=NO09G02230.1|Name=NO09G02230.1|organism=Nannochloropsis oceanica|type=CDS|length=1764bp|location=Sequence derived from alignment at chr9:675664..677614- (Nannochloropsis oceanica)
ATGGAGCCTCCCCACTCCAAGCGGCCTCTCTCGGCCCAGACCGCATTGCT
GTCGCCCAAACGCCAGTGCCAGTACACCCAAGGCCAGGATGATGACGACG
ATGACATTGGTTTCCTTGCCAAGCTTTTGAGGGAGGAAGAGGATCATCAT
CATCATCAGCAGCAGCAGCAGCAGGTGGAGGAGGAGGAGGAGGGGTCCTC
GCACCTTGACAAGCCTCAAGGAGCCCAGAAGGAGGACGACGAGGAGGAGG
AAGGGAACACATCAACATCCCATGACCCGGCCTTAAAAATTGCTTGCGTC
AAGTCAATCTTGTACGAGCCCCAACAAGAAGGGGAGCACGAAAATACCAC
CACCGCTGCTTCCGCTTCCCTCGCCGCTGTTCCCTTTCGTCGGCCCCAAA
CCTACAACGACAATGACTTGTTCCGCTCTCTACAACTCATGGACTTTGAA
AGTGCTCAGGCCTTGCTTGATTATGACCCCGAGTTGATGGTCTCTAGAGA
CGAGGACTTCGCTCAGCCCTTGGCTGTGGCAGTCGAAGCCCGTTTTGAAA
AAAACGTCAAGTATCTTTTGCATCTTGGGTGTCCTTTGCAGGAAGTCGAC
GGACGGGGCTTCAGTGCTCTTCACATAGCAGTGGAAGCCTTTAGAGACAT
GCCTTTTTTGTTGAGGTATTTGTTGCAATACAAAGGGCTGGACATCAATT
CGCGTGTGCCGCCTTTGCACGGGGTGTGTCCGCTTCACCTTGCCGAGGAC
GAGCGGGTTTTAAAACTGCTTTTGGGTTGTGGGGCGGACCCTTCCATGCT
GGTGCCGGTGCAGGTTGGGAGGAGGAGAAAGGACGGGGAGGAGGGCAAGG
AAGAGGAGGAGGATGTGTTGGGCCGTGTGGAGCGAACTTGGCCTCGGGGG
AAGGGCAAGAAAAAAGCTCGTTTCTTGCTCACGCGCTTGTCGCCGTACCA
AAGCTACACGCTGGCCAAGCTGCGCTTTATCACACACATGTATTGTTCCT
GCCGATTCTCTTCCTCCTCATCCTTTCTGCAGTCCTCCATTCTCACGGCT
AGAGCAAAAATAATCGATGCACGTCTGGACGAGGACTCGGAGTTGCTGGA
CCTCCAGAAAGAGGACAAGAACGAAGAAGAGGCCGACATTTGGTGCAAAG
AAGAGGTCAAAGGCCAAGTATTTAGCTTTGTCGAAAATGGACATCTGTAC
CTTGCACGGAACAGGAGTACCGGCCTTGATCATCCTCCTCCCCTGGCCGC
TGTTGCTGTTGCTGCAGCTGCTTCTGGTTCTTCTTCTCCATCACGGTCTC
CCCCGCGGCCGGCAGCAGCAGCCGCCGTGGGCGGAAGCAATGGTAATGGA
GAGAAGAAAGGCAGACCGATCCCTCCTCATCCGGCGGGCTTGTGCCCACT
TTCAGTTTTGAAAGCTGCGAGAGCAGATTTTTTTCTGGTAAGTAAGTATA
AGGAGGAGTATGAGGGGGAGGGAAAGATGGCCGCATACGACAATGGCAGC
AATAGCTCCAGCAGCGTCAGCAATAGCTCCAGGAGCAGCAGCGGTAGGAT
GGATGGGGGGAAATGGGTGTTGTTGCCAGCTTTGCCAAGGGTCGACATTC
ATTGGAGGGAGCCGAATGGGGGGAAGGAGAACGAGGGAGGGGAGGGCGGG
AAGAGCGGCATGGCTGCTGCTGTGTTGCAGATGCTTGTTCATGAGGTGAG
GGATGAGGGTGTGGTGGATGCGCTTCAGGCCATGCTTTGGACTGGGATGG
GGAAGAAAGTATGA
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Synonyms
Publications