NO09G01850, NO09G01850 (gene) Nannochloropsis oceanica

Overview
NameNO09G01850
Unique NameNO09G01850
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length829
Alignment locationchr9:578011..578839 +

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Properties
Property NameValue
DescriptionNadh dehydrogenase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:578011..578839 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036748MTH938-like_sf
IPR007523NADH_Ub_cplx-1_asu_assmbl-fac3
Homology
[Close]
BLAST of NO09G01850 vs. NCBI_GenBank
Match: XP_005856081.1 (nadh dehydrogenase, partial [Nannochloropsis gaditana CCMP526] >EKU20276.1 nadh dehydrogenase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 243.4 bits (620), Expect = 6.200e-61
Identity = 120/168 (71.43%), Postives = 143/168 (85.12%), Query Frame = 0 
Query:   45 PSSTSLKHHQHFKQYRQQQIRGLADLGKGVDILAPG-EEETGKDRTFLLGYDGGGFEVRDINYRGSILAMPSACFLWKPRNVEEITPESLTALMVVRPPIEILVVGTGEDSVNRPLAPATLAFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDTAAEENE 212
            P + +L   +H + +R+QQ R  +DLGKG+D+LA G EEE G++RTFLLGYDG GFEVRD+NYRGSILA+P+ACFLWKP+ +EEITPESL  L++V+P IEIL++GTGE+ V R LA  TL FLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVD AAEE+E
Sbjct:   43 PYAPALWDQKHQQNHRRQQSRAFSDLGKGIDVLAVGNEEEAGRERTFLLGYDGQGFEVRDVNYRGSILALPTACFLWKPKKIEEITPESLAPLLIVKPAIEILIIGTGEEVVGRALALTTLKFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDAAAEESE 210
[Close]
BLAST of NO09G01850 vs. NCBI_GenBank
Match: EWM27619.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 [Nannochloropsis gaditana])

HSP 1 Score: 243.4 bits (620), Expect = 6.200e-61
Identity = 120/168 (71.43%), Postives = 143/168 (85.12%), Query Frame = 0 
Query:   45 PSSTSLKHHQHFKQYRQQQIRGLADLGKGVDILAPG-EEETGKDRTFLLGYDGGGFEVRDINYRGSILAMPSACFLWKPRNVEEITPESLTALMVVRPPIEILVVGTGEDSVNRPLAPATLAFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDTAAEENE 212
            P + +L   +H + +R+QQ R  +DLGKG+D+LA G EEE G++RTFLLGYDG GFEVRD+NYRGSILA+P+ACFLWKP+ +EEITPESL  L++V+P IEIL++GTGE+ V R LA  TL FLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVD AAEE+E
Sbjct:   37 PYAPALWDQKHQQNHRRQQSRAFSDLGKGIDVLAVGNEEEAGRERTFLLGYDGQGFEVRDVNYRGSILALPTACFLWKPKKIEEITPESLAPLLIVKPAIEILIIGTGEEVVGRALALTTLKFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDAAAEESE 204
[Close]
BLAST of NO09G01850 vs. NCBI_GenBank
Match: XP_008617172.1 (hypothetical protein SDRG_12868 [Saprolegnia diclina VS20] >EQC29405.1 hypothetical protein SDRG_12868 [Saprolegnia diclina VS20])

HSP 1 Score: 124.8 bits (312), Expect = 3.200e-25
Identity = 60/121 (49.59%), Postives = 85/121 (70.25%), Query Frame = 0 
Query:   81 EEETGKDRTFLLGYDGGGFEVRDINYRGSILAMPSACFLWKPRNVEEITPESLTALMVVRPPIEILVVGTGEDSVNRPLAPATLAFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALL 202
            E  TG  +  +  YD GGF V D+N RGS+  MP+   +WKPR+++EIT ESL    V  PPIEILV+G G+  + + L P+ + +L +NG+ VE++D+ +AC+TFNILN EDR+VAAA+L
Sbjct:   31 EMMTGTAKVSISEYDDGGFVVNDVNMRGSVALMPNIAMMWKPRSLDEITIESLNVFTVANPPIEILVLGCGK-RIAKQLEPSLVEYLKSNGIVVEYLDSFNACATFNILNAEDRKVAAAIL 150
[Close]
BLAST of NO09G01850 vs. NCBI_GenBank
Match: POM63489.1 (Hypothetical protein PHPALM_21097 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 124.8 bits (312), Expect = 3.200e-25
Identity = 63/120 (52.50%), Postives = 77/120 (64.17%), Query Frame = 0 
Query:   85 GKDRTFLLGYDGGGFEVRDINYRGSILAMPSACFLWKPRNVEEITPESLTALMVVRPPIEILVVGTGEDSVNRPLAPATLAFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVD 205
            G  +  +  YD GGF + D+N RG ++       LWKPR +EEIT E LT   V  PPIEILV+G GE  +N  LAP     L  NG+ VE++DT +AC+TFNILN EDRRVAAALL  D
Sbjct:    4 GTAKVSVTEYDEGGFVINDVNMRGGVVLFSEIAMLWKPRRIEEITREHLTVFTVSNPPIEILVLGCGE-RINHGLAPELKEMLKVNGIVVEYLDTVNACATFNILNAEDRRVAAALLPYD 122
[Close]
BLAST of NO09G01850 vs. NCBI_GenBank
Match: XP_012195109.1 (hypothetical protein SPRG_01509 [Saprolegnia parasitica CBS 223.65] >KDO34373.1 hypothetical protein SPRG_01509 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 124.4 bits (311), Expect = 4.200e-25
Identity = 59/121 (48.76%), Postives = 85/121 (70.25%), Query Frame = 0 
Query:   81 EEETGKDRTFLLGYDGGGFEVRDINYRGSILAMPSACFLWKPRNVEEITPESLTALMVVRPPIEILVVGTGEDSVNRPLAPATLAFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALL 202
            E  TG  +  +  YD GGF V D+N RGS+  +P+   +WKPR+++EIT ESL    V  PPIEILV+G G+  + + L P+ + +L +NG+ VE++D+ +AC+TFNILN EDR+VAAA+L
Sbjct:   31 EMMTGTSKVSISEYDDGGFVVNDVNMRGSVALLPNIAMMWKPRSLDEITIESLNVFTVANPPIEILVLGCGK-RIAKQLEPSLVEYLKSNGIVVEYLDSFNACATFNILNAEDRKVAAAIL 150
[Close]
BLAST of NO09G01850 vs. NCBI_GenBank
Match: XP_009519487.1 (hypothetical protein PHYSODRAFT_353930 [Phytophthora sojae] >EGZ24199.1 hypothetical protein PHYSODRAFT_353930 [Phytophthora sojae])

HSP 1 Score: 123.6 bits (309), Expect = 7.200e-25
Identity = 66/129 (51.16%), Postives = 80/129 (62.02%), Query Frame = 0 
Query:   85 GKDRTFLLGYDGGGFEVRDINYRGSILAMPSACFLWKPRNVEEITPESLTALMVVRPPIEILVVGTGEDSVNRPLAPATLAFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVD-TAAEENEE 213
            G  +  +  YD GGF + D+N RG +        LWKP+ VEEIT E LT   +  PPIEILV+G GE  +N  LAP     L  NG+ VE++DT +AC+TFNILN EDRRVAAALL  D  AA E  E
Sbjct:    8 GTAKVSITEYDEGGFVINDVNMRGGVALFSEIAMLWKPKRVEEITREHLTVFTIANPPIEILVLGCGE-RINHGLAPELKEMLKVNGIVVEYLDTVNACATFNILNAEDRRVAAALLPYDPNAAPEVHE 135
[Close]
BLAST of NO09G01850 vs. NCBI_GenBank
Match: XP_002897397.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY65140.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 123.2 bits (308), Expect = 9.400e-25
Identity = 62/123 (50.41%), Postives = 77/123 (62.60%), Query Frame = 0 
Query:   85 GKDRTFLLGYDGGGFEVRDINYRGSILAMPSACFLWKPRNVEEITPESLTALMVVRPPIEILVVGTGEDSVNRPLAPATLAFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDTAA 208
            G  +  +  YD GGF V D+N RG +        LWKP+ VEEIT E LT   V  PP+EILV+G GE  +N  LAP     +  NG+ +E++DT +AC+TFNILN EDRRVAAALL  D  A
Sbjct:   40 GTAKVSVTEYDEGGFVVNDVNMRGGVALFSEIAMLWKPKRVEEITREHLTVFTVANPPVEILVLGCGE-RINHGLAPELKELMKVNGIVIEYLDTVNACATFNILNAEDRRVAAALLPYDPDA 161
[Close]
BLAST of NO09G01850 vs. NCBI_GenBank
Match: OQR86263.1 (hypothetical protein ACHHYP_10791 [Achlya hypogyna])

HSP 1 Score: 123.2 bits (308), Expect = 9.400e-25
Identity = 61/121 (50.41%), Postives = 82/121 (67.77%), Query Frame = 0 
Query:   81 EEETGKDRTFLLGYDGGGFEVRDINYRGSILAMPSACFLWKPRNVEEITPESLTALMVVRPPIEILVVGTGEDSVNRPLAPATLAFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALL 202
            E  TG  +  +  YD GGF V D+N RGSI  +PS   +WKP  +EEIT ESL    V  PPIEILV+G G+  + R L P  + +L ++G+ VE++D+ +AC+TFNILN EDR+VAAA+L
Sbjct:   29 EMMTGTSKVSIAEYDDGGFVVNDVNMRGSIALLPSIAMMWKPNTMEEITVESLNIFTVANPPIEILVLGCGK-RIARQLDPKLVEYLKSHGIVVEYLDSFNACATFNILNAEDRKVAAAIL 148
[Close]
BLAST of NO09G01850 vs. NCBI_GenBank
Match: OWY99676.1 (putative mitochondrial protein [Phytophthora megakarya])

HSP 1 Score: 120.9 bits (302), Expect = 4.700e-24
Identity = 62/123 (50.41%), Postives = 76/123 (61.79%), Query Frame = 0 
Query:   85 GKDRTFLLGYDGGGFEVRDINYRGSILAMPSACFLWKPRNVEEITPESLTALMVVRPPIEILVVGTGEDSVNRPLAPATLAFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDTAA 208
            G  +  +  YD GGF + D+N RG ++       LWKP  +EEIT E L    V  PPIEILV+G GE  +N  LAP     L  NG+ VE++DT +AC+TFNILN EDRRVAAALL  D  A
Sbjct:    4 GTAKVSVTEYDEGGFVINDVNMRGGVVLFSEIAMLWKPTRIEEITREHLAVFTVSNPPIEILVLGCGE-RINHGLAPELKEMLKVNGIVVEYLDTVNACATFNILNAEDRRVAAALLPYDPDA 125
[Close]
BLAST of NO09G01850 vs. NCBI_GenBank
Match: XP_008910236.1 (hypothetical protein PPTG_15000 [Phytophthora parasitica INRA-310] >ETL86732.1 hypothetical protein L917_13882 [Phytophthora parasitica] >ETM39916.1 hypothetical protein L914_14001 [Phytophthora parasitica] >ETN04309.1 hypothetical protein PPTG_15000 [Phytophthora parasitica INRA-310])

HSP 1 Score: 120.6 bits (301), Expect = 6.100e-24
Identity = 60/123 (48.78%), Postives = 76/123 (61.79%), Query Frame = 0 
Query:   85 GKDRTFLLGYDGGGFEVRDINYRGSILAMPSACFLWKPRNVEEITPESLTALMVVRPPIEILVVGTGEDSVNRPLAPATLAFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDTAA 208
            G  +  +  YD GGF + D+N RG +        LWKP+ +EEIT + L    V  PP+EILV+G GE  +N  LAP     L  NG+ VE++DT +AC+TFNILN EDRRVAAALL  D  A
Sbjct:   54 GTAKVSVTEYDEGGFVINDVNMRGGVALFSEIAMLWKPKRIEEITRDHLAVFTVANPPVEILVLGCGE-RINHGLAPELKELLKTNGIVVEYLDTVNACATFNILNAEDRRVAAALLPYDPDA 175
The following BLAST results are available for this feature:
BLAST of NO09G01850 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005856081.16.200e-6171.43nadh dehydrogenase, partial [Nannochloropsis gadit... [more]
EWM27619.16.200e-6171.43NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
XP_008617172.13.200e-2549.59hypothetical protein SDRG_12868 [Saprolegnia dicli... [more]
POM63489.13.200e-2552.50Hypothetical protein PHPALM_21097 [Phytophthora pa... [more]
XP_012195109.14.200e-2548.76hypothetical protein SPRG_01509 [Saprolegnia paras... [more]
XP_009519487.17.200e-2551.16hypothetical protein PHYSODRAFT_353930 [Phytophtho... [more]
XP_002897397.19.400e-2550.41conserved hypothetical protein [Phytophthora infes... [more]
OQR86263.19.400e-2550.41hypothetical protein ACHHYP_10791 [Achlya hypogyna... [more]
OWY99676.14.700e-2450.41putative mitochondrial protein [Phytophthora megak... [more]
XP_008910236.16.100e-2448.78hypothetical protein PPTG_15000 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL121nonsL121Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR128ngnoR128Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010688NSK010688Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G01850.1NO09G01850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588876gene_4366Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100069g7gene2946Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G01850.1NO09G01850.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G01850 ID=NO09G01850|Name=NO09G01850|organism=Nannochloropsis oceanica|type=gene|length=829bp
TTGCTGGAGAGAAATCCGCATCTCATGCCTCTCCTCAACAGCGCCTTTTT
CTTAACCTGAACATCCCAAAATTGTACACTCGGGCACCAGGACACCCACA
AGCAAATGTTGCCGCGTATCGCAAGACGAATCCGGCCCTTAAAATGCCAT
GTAGTAAACTCCTCGTCTTCGTCCTCGTCTTCGGGTTCGCCGCAGCAACG
GCCAAACGCCTCGGCATCATCAGCGTTCCCCCTCCTGCCATCTTCGACCT
CATTGAAACACCACCAGCACTTCAAACAGTACCGCCAGCAGCAAATACGT
GGTCTGGCAGATTTGGGCAAGGGTGTCGATATCTTGGCGCCGGGGGAAGA
AGAAACGGGGAAGGATCGAACGTTCTTGCTGGGCTACGATGGGGGAGGCT
TCGAGGTGCGGGATATCAATTATCGGGGGTCCATTCTTGCCATGCCCTCG
GCCTGCTTCTTGTGGAAGCCACGCAACGTAGAGGAAATCACACCCGAGTC
ATTGACAGCTTTGATGGTGGTCAGGCCGCCTATTGAGATACTGGTGGTGG
GCACGGGGGAAGACTCCGTGAATCGCCCGTTGGCCCCTGCCACGCTGGCG
TTTCTTGCCGCGAATGGCGTGGCAGTCGAACACATGGACACGACATCCGC
GTGTTCTACATTCAATATTTTGAACCAGGAGGACCGGCGGGTGGCTGCTG
CTTTGCTGGCAGTGGACACAGCGGCGGAAGAGAATGAGGAATAGGCAGGC
AGGTTGTGTATATAGATGAAGATAAAGATGAACATGACAAGGGAGTGATA
GAAGAGCCCTCTAGTATATGACGGGGGGG
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protein sequence of NO09G01850.1

>NO09G01850.1-protein ID=NO09G01850.1-protein|Name=NO09G01850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MLPRIARRIRPLKCHVVNSSSSSSSSGSPQQRPNASASSAFPLLPSSTSL
KHHQHFKQYRQQQIRGLADLGKGVDILAPGEEETGKDRTFLLGYDGGGFE
VRDINYRGSILAMPSACFLWKPRNVEEITPESLTALMVVRPPIEILVVGT
GEDSVNRPLAPATLAFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAAL
LAVDTAAEENEE*
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Synonyms
Publications