NO09G01850.1, NO09G01850.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01850.1
Unique NameNO09G01850.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length829
Alignment locationchr9:578011..578839 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:578011..578839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G01850.1 vs.
Match: XP_005856081.1 (nadh dehydrogenase, partial [Nannochloropsis gaditana CCMP526]; EKU20276.1 nadh dehydrogenase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 238.4 bits (607), Expect = 2.000e-59
Identity = 127/196 (64.80%), Postives = 153/196 (78.06%), Query Frame = 0
Query:   17 VNSSSSSSSSGSPQQRPNASASSAFPLLPSSTSLKHHQHFKQYRQQQIRGLADLGKGVDILAPG-EEETGKDRTFLLGYDGGGFEVRDINYRGSILAMPSACFLWKPRNVEEITPESLTALMVVRPPIEILVVGTGEDSVNRPLAPATLAFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDTAAEENE 212
            V  SS +++S  P++          P  P+    KH Q+   +R+QQ R  +DLGKG+D+LA G EEE G++RTFLLGYDG GFEVRD+NYRGSILA+P+ACFLWKP+ +EEITPESL  L++V+P IEIL++GTGE+ V R LA  TL FLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVD AAEE+E
Sbjct:   18 VRLSSEAATSTCPERNYPPVDLFHPPYAPALWDQKHQQN---HRRQQSRAFSDLGKGIDVLAVGNEEEAGRERTFLLGYDGQGFEVRDVNYRGSILALPTACFLWKPKKIEEITPESLAPLLIVKPAIEILIIGTGEEVVGRALALTTLKFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDAAAEESE 210          
The following BLAST results are available for this feature:
BLAST of NO09G01850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856081.12.000e-5964.80nadh dehydrogenase, partial [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01850NO09G01850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01850.1NO09G01850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01850.1.cds1NO09G01850.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01850.1 ID=NO09G01850.1|Name=NO09G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=829bp
TTGCTGGAGAGAAATCCGCATCTCATGCCTCTCCTCAACAGCGCCTTTTT
CTTAACCTGAACATCCCAAAATTGTACACTCGGGCACCAGGACACCCACA
AGCAAATGTTGCCGCGTATCGCAAGACGAATCCGGCCCTTAAAATGCCAT
GTAGTAAACTCCTCGTCTTCGTCCTCGTCTTCGGGTTCGCCGCAGCAACG
GCCAAACGCCTCGGCATCATCAGCGTTCCCCCTCCTGCCATCTTCGACCT
CATTGAAACACCACCAGCACTTCAAACAGTACCGCCAGCAGCAAATACGT
GGTCTGGCAGATTTGGGCAAGGGTGTCGATATCTTGGCGCCGGGGGAAGA
AGAAACGGGGAAGGATCGAACGTTCTTGCTGGGCTACGATGGGGGAGGCT
TCGAGGTGCGGGATATCAATTATCGGGGGTCCATTCTTGCCATGCCCTCG
GCCTGCTTCTTGTGGAAGCCACGCAACGTAGAGGAAATCACACCCGAGTC
ATTGACAGCTTTGATGGTGGTCAGGCCGCCTATTGAGATACTGGTGGTGG
GCACGGGGGAAGACTCCGTGAATCGCCCGTTGGCCCCTGCCACGCTGGCG
TTTCTTGCCGCGAATGGCGTGGCAGTCGAACACATGGACACGACATCCGC
GTGTTCTACATTCAATATTTTGAACCAGGAGGACCGGCGGGTGGCTGCTG
CTTTGCTGGCAGTGGACACAGCGGCGGAAGAGAATGAGGAATAGGCAGGC
AGGTTGTGTATATAGATGAAGATAAAGATGAACATGACAAGGGAGTGATA
GAAGAGCCCTCTAGTATATGACGGGGGGG
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protein sequence of NO09G01850.1

>NO09G01850.1-protein ID=NO09G01850.1-protein|Name=NO09G01850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MLPRIARRIRPLKCHVVNSSSSSSSSGSPQQRPNASASSAFPLLPSSTSL
KHHQHFKQYRQQQIRGLADLGKGVDILAPGEEETGKDRTFLLGYDGGGFE
VRDINYRGSILAMPSACFLWKPRNVEEITPESLTALMVVRPPIEILVVGT
GEDSVNRPLAPATLAFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAAL
LAVDTAAEENEE*
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mRNA from alignment at chr9:578011..578839+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01850.1 ID=NO09G01850.1|Name=NO09G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=829bp|location=Sequence derived from alignment at chr9:578011..578839+ (Nannochloropsis oceanica)
TTGCTGGAGAGAAATCCGCATCTCATGCCTCTCCTCAACAGCGCCTTTTT CTTAACCTGAACATCCCAAAATTGTACACTCGGGCACCAGGACACCCACA AGCAAATGTTGCCGCGTATCGCAAGACGAATCCGGCCCTTAAAATGCCAT GTAGTAAACTCCTCGTCTTCGTCCTCGTCTTCGGGTTCGCCGCAGCAACG GCCAAACGCCTCGGCATCATCAGCGTTCCCCCTCCTGCCATCTTCGACCT CATTGAAACACCACCAGCACTTCAAACAGTACCGCCAGCAGCAAATACGT GGTCTGGCAGATTTGGGCAAGGGTGTCGATATCTTGGCGCCGGGGGAAGA AGAAACGGGGAAGGATCGAACGTTCTTGCTGGGCTACGATGGGGGAGGCT TCGAGGTGCGGGATATCAATTATCGGGGGTCCATTCTTGCCATGCCCTCG GCCTGCTTCTTGTGGAAGCCACGCAACGTAGAGGAAATCACACCCGAGTC ATTGACAGCTTTGATGGTGGTCAGGCCGCCTATTGAGATACTGGTGGTGG GCACGGGGGAAGACTCCGTGAATCGCCCGTTGGCCCCTGCCACGCTGGCG TTTCTTGCCGCGAATGGCGTGGCAGTCGAACACATGGACACGACATCCGC GTGTTCTACATTCAATATTTTGAACCAGGAGGACCGGCGGGTGGCTGCTG CTTTGCTGGCAGTGGACACAGCGGCGGAAGAGAATGAGGAATAGGCAGGC AGGTTGTGTATATAGATGAAGATAAAGATGAACATGACAAGGGAGTGATA GAAGAGCCCTCTAGTATATGACGGGGGGG
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Coding sequence (CDS) from alignment at chr9:578011..578839+

>NO09G01850.1 ID=NO09G01850.1|Name=NO09G01850.1|organism=Nannochloropsis oceanica|type=CDS|length=639bp|location=Sequence derived from alignment at chr9:578011..578839+ (Nannochloropsis oceanica)
ATGTTGCCGCGTATCGCAAGACGAATCCGGCCCTTAAAATGCCATGTAGT
AAACTCCTCGTCTTCGTCCTCGTCTTCGGGTTCGCCGCAGCAACGGCCAA
ACGCCTCGGCATCATCAGCGTTCCCCCTCCTGCCATCTTCGACCTCATTG
AAACACCACCAGCACTTCAAACAGTACCGCCAGCAGCAAATACGTGGTCT
GGCAGATTTGGGCAAGGGTGTCGATATCTTGGCGCCGGGGGAAGAAGAAA
CGGGGAAGGATCGAACGTTCTTGCTGGGCTACGATGGGGGAGGCTTCGAG
GTGCGGGATATCAATTATCGGGGGTCCATTCTTGCCATGCCCTCGGCCTG
CTTCTTGTGGAAGCCACGCAACGTAGAGGAAATCACACCCGAGTCATTGA
CAGCTTTGATGGTGGTCAGGCCGCCTATTGAGATACTGGTGGTGGGCACG
GGGGAAGACTCCGTGAATCGCCCGTTGGCCCCTGCCACGCTGGCGTTTCT
TGCCGCGAATGGCGTGGCAGTCGAACACATGGACACGACATCCGCGTGTT
CTACATTCAATATTTTGAACCAGGAGGACCGGCGGGTGGCTGCTGCTTTG
CTGGCAGTGGACACAGCGGCGGAAGAGAATGAGGAATAG
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Synonyms
Publications