NO09G01810, NO09G01810 (gene) Nannochloropsis oceanica

Overview
NameNO09G01810
Unique NameNO09G01810
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1219
Alignment locationchr9:556038..557256 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:556038..557256 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO09G01810 vs. NCBI_GenBank
Match: EWM27616.1 (hypothetical protein Naga_100069g14 [Nannochloropsis gaditana])

HSP 1 Score: 130.6 bits (327), Expect = 3.500e-27
Identity = 79/124 (63.71%), Postives = 90/124 (72.58%), Query Frame = 0 
Query:    1 MSRSVAFLCAMALASLCGLVAAFRPAGFLPAISASTARPVSVTRYLSPSTFSSRQSRSSRSRLFEGPPSRPTRENEPDEYFKSNLEKKDLAERLVDPQVVIAVVSILAPFVAVGVLLGGGFLTR 125
            M RS A L  + +  + GLV  FRP+   P+ S+      S  R     TFS   SR  RSRLF+GPP RPTRENEPDEYFKSNLEKK+L+ERLVDPQV+IAVVSILAPFVAVGVLLGGGFLT+
Sbjct:    1 MLRSAACLGTLVVVCIIGLVIGFRPSYNSPSQSSRPVTLKSCVRDFHSRTFS---SRGQRSRLFQGPPGRPTRENEPDEYFKSNLEKKELSERLVDPQVLIAVVSILAPFVAVGVLLGGGFLTQ 121
The following BLAST results are available for this feature:
BLAST of NO09G01810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27616.13.500e-2763.71hypothetical protein Naga_100069g14 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL121nonsL121Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR128ngnoR128Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010696NSK010696Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G01810.1NO09G01810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588898gene_4370Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100069g14gene2951Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G01810.1NO09G01810.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G01810 ID=NO09G01810|Name=NO09G01810|organism=Nannochloropsis oceanica|type=gene|length=1219bp
CAACACATCAACATATGTGCGTCATTTGTACCTTCTTTACTTGCTCTTAT
CATGCCAAGGCATCACCATAAACCACCCGAGTCTCCTTTACACGCTCTAG
GGTAGGATCTTCGGCCATGATGGCCATGCCCATGGTAAATGGCGTTGCAG
ACAACCACCTGGCCGCTTCTTCGCTCATCAGACACATGATCGGAGTATTT
CTGCCACGCACCATGATTTCATGTCCATTTTCTTTTATGGTGGTCGATCA
CGAAACCCCAACCCCTCTGGCCAACGTGAATGTGTACATTCTGAACGCGA
CAATACTCTCTTCTAGGCATGAACTCAGAAAAAGGAAAAACTTTGAGTGT
GTAGCGGGTTACGGCCAAGAAAAAGAGACATACCACATCACCATAGACAT
CAGACACTTGTTCAGACGGAGTACGCGTTCCCCACCACAATGACGCCCAC
GCCCTTCCTTTCTGACTCTCACTTTCCTATCTTTATGCACACATCAGACA
GCTTTTGTCCAGTACAATCCCAGACACCAAAAACATCATGTCCCGCTCTG
TTGCCTTCCTCTGTGCCATGGCCCTCGCCTCCCTGTGCGGCCTCGTCGCT
GCCTTCAGACCAGCAGGCTTCCTGCCGGCAATCAGCGCCAGCACCGCTCG
GCCTGTCTCCGTCACCCGTTATCTCTCCCCCTCCACCTTCTCCTCAAGAC
AGAGCAGGAGCAGCAGGAGCAGGTTGTTCGAGGGGCCCCCTTCCCGCCCT
ACCCGTGAGAATGAGCCAGATGAGTATTTCAAGTCCAACCTGGAAAAGAA
GGATTTAGCCGAGCGTCTCGTCGACCCACAAGTTGTTATTGCTGTGGTGA
GCATCCTGGCACCTTTTGTGGCCGTGGGGGTGTTGCTGGGCGGTGGGTTT
TTGACCCGATAGGCAATCATCGAAAGGTATCAGAGAATGAGGAAGAGAAC
AGCAGCAGCGAGGGGGGGGGGTGAAAACGAGGACAAAGGAGAACGAACTA
AGCCACCATATAAAGGATGAGGACCGTGCGTGAATCATTGTTAAACTTGC
AGCAAACAGCAAAGCTGAAGCCAAGAGGAGTGCCCGCGCAGAGCACATCC
GAAGTGGCAGGGTAGAGGCGCGAGGTGGAAAGATAAGAATAGGATGAGGA
GGTGCTCACTCGGTAGCAGTGAGAGAGATGGATGGCCTCACAAACTTTTT
TGTACAAGCGGAGAGAGTT
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protein sequence of NO09G01810.1

>NO09G01810.1-protein ID=NO09G01810.1-protein|Name=NO09G01810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=125bp
MSRSVAFLCAMALASLCGLVAAFRPAGFLPAISASTARPVSVTRYLSPST
FSSRQSRSSRSRLFEGPPSRPTRENEPDEYFKSNLEKKDLAERLVDPQVV
IAVVSILAPFVAVGVLLGGGFLTR*
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Synonyms
Publications