NO09G01810.1, NO09G01810.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01810.1
Unique NameNO09G01810.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1219
Alignment locationchr9:556038..557256 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:556038..557256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G01810.1 vs.
Match: EWM27616.1 (hypothetical protein Naga_100069g14 [Nannochloropsis gaditana])

HSP 1 Score: 130.6 bits (327), Expect = 3.500e-27
Identity = 79/124 (63.71%), Postives = 90/124 (72.58%), Query Frame = 0 
Query:    1 MSRSVAFLCAMALASLCGLVAAFRPAGFLPAISASTARPVSVTRYLSPSTFSSRQSRSSRSRLFEGPPSRPTRENEPDEYFKSNLEKKDLAERLVDPQVVIAVVSILAPFVAVGVLLGGGFLTR 125
            M RS A L  + +  + GLV  FRP+   P+ S+      S  R     TFSSR     RSRLF+GPP RPTRENEPDEYFKSNLEKK+L+ERLVDPQV+IAVVSILAPFVAVGVLLGGGFLT+
Sbjct:    1 MLRSAACLGTLVVVCIIGLVIGFRPSYNSPSQSSRPVTLKSCVRDFHSRTFSSR---GQRSRLFQGPPGRPTRENEPDEYFKSNLEKKELSERLVDPQVLIAVVSILAPFVAVGVLLGGGFLTQ 121
The following BLAST results are available for this feature:
BLAST of NO09G01810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27616.13.500e-2763.71hypothetical protein Naga_100069g14 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01810NO09G01810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01810.1NO09G01810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01810.1.cds1NO09G01810.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01810.1 ID=NO09G01810.1|Name=NO09G01810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1219bp
CAACACATCAACATATGTGCGTCATTTGTACCTTCTTTACTTGCTCTTAT
CATGCCAAGGCATCACCATAAACCACCCGAGTCTCCTTTACACGCTCTAG
GGTAGGATCTTCGGCCATGATGGCCATGCCCATGGTAAATGGCGTTGCAG
ACAACCACCTGGCCGCTTCTTCGCTCATCAGACACATGATCGGAGTATTT
CTGCCACGCACCATGATTTCATGTCCATTTTCTTTTATGGTGGTCGATCA
CGAAACCCCAACCCCTCTGGCCAACGTGAATGTGTACATTCTGAACGCGA
CAATACTCTCTTCTAGGCATGAACTCAGAAAAAGGAAAAACTTTGAGTGT
GTAGCGGGTTACGGCCAAGAAAAAGAGACATACCACATCACCATAGACAT
CAGACACTTGTTCAGACGGAGTACGCGTTCCCCACCACAATGACGCCCAC
GCCCTTCCTTTCTGACTCTCACTTTCCTATCTTTATGCACACATCAGACA
GCTTTTGTCCAGTACAATCCCAGACACCAAAAACATCATGTCCCGCTCTG
TTGCCTTCCTCTGTGCCATGGCCCTCGCCTCCCTGTGCGGCCTCGTCGCT
GCCTTCAGACCAGCAGGCTTCCTGCCGGCAATCAGCGCCAGCACCGCTCG
GCCTGTCTCCGTCACCCGTTATCTCTCCCCCTCCACCTTCTCCTCAAGAC
AGAGCAGGAGCAGCAGGAGCAGGTTGTTCGAGGGGCCCCCTTCCCGCCCT
ACCCGTGAGAATGAGCCAGATGAGTATTTCAAGTCCAACCTGGAAAAGAA
GGATTTAGCCGAGCGTCTCGTCGACCCACAAGTTGTTATTGCTGTGGTGA
GCATCCTGGCACCTTTTGTGGCCGTGGGGGTGTTGCTGGGCGGTGGGTTT
TTGACCCGATAGGCAATCATCGAAAGGTATCAGAGAATGAGGAAGAGAAC
AGCAGCAGCGAGGGGGGGGGGTGAAAACGAGGACAAAGGAGAACGAACTA
AGCCACCATATAAAGGATGAGGACCGTGCGTGAATCATTGTTAAACTTGC
AGCAAACAGCAAAGCTGAAGCCAAGAGGAGTGCCCGCGCAGAGCACATCC
GAAGTGGCAGGGTAGAGGCGCGAGGTGGAAAGATAAGAATAGGATGAGGA
GGTGCTCACTCGGTAGCAGTGAGAGAGATGGATGGCCTCACAAACTTTTT
TGTACAAGCGGAGAGAGTT
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protein sequence of NO09G01810.1

>NO09G01810.1-protein ID=NO09G01810.1-protein|Name=NO09G01810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=125bp
MSRSVAFLCAMALASLCGLVAAFRPAGFLPAISASTARPVSVTRYLSPST
FSSRQSRSSRSRLFEGPPSRPTRENEPDEYFKSNLEKKDLAERLVDPQVV
IAVVSILAPFVAVGVLLGGGFLTR*
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mRNA from alignment at chr9:556038..557256+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01810.1 ID=NO09G01810.1|Name=NO09G01810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1219bp|location=Sequence derived from alignment at chr9:556038..557256+ (Nannochloropsis oceanica)
CAACACATCAACATATGTGCGTCATTTGTACCTTCTTTACTTGCTCTTAT
CATGCCAAGGCATCACCATAAACCACCCGAGTCTCCTTTACACGCTCTAG
GGTAGGATCTTCGGCCATGATGGCCATGCCCATGGTAAATGGCGTTGCAG
ACAACCACCTGGCCGCTTCTTCGCTCATCAGACACATGATCGGAGTATTT
CTGCCACGCACCATGATTTCATGTCCATTTTCTTTTATGGTGGTCGATCA
CGAAACCCCAACCCCTCTGGCCAACGTGAATGTGTACATTCTGAACGCGA
CAATACTCTCTTCTAGGCATGAACTCAGAAAAAGGAAAAACTTTGAGTGT
GTAGCGGGTTACGGCCAAGAAAAAGAGACATACCACATCACCATAGACAT
CAGACACTTGTTCAGACGGAGTACGCGTTCCCCACCACAATGACGCCCAC
GCCCTTCCTTTCTGACTCTCACTTTCCTATCTTTATGCACACATCAGACA
GCTTTTGTCCAGTACAATCCCAGACACCAAAAACATCATGTCCCGCTCTG
TTGCCTTCCTCTGTGCCATGGCCCTCGCCTCCCTGTGCGGCCTCGTCGCT
GCCTTCAGACCAGCAGGCTTCCTGCCGGCAATCAGCGCCAGCACCGCTCG
GCCTGTCTCCGTCACCCGTTATCTCTCCCCCTCCACCTTCTCCTCAAGAC
AGAGCAGGAGCAGCAGGAGCAGGTTGTTCGAGGGGCCCCCTTCCCGCCCT
ACCCGTGAGAATGAGCCAGATGAGTATTTCAAGTCCAACCTGGAAAAGAA
GGATTTAGCCGAGCGTCTCGTCGACCCACAAGTTGTTATTGCTGTGGTGA
GCATCCTGGCACCTTTTGTGGCCGTGGGGGTGTTGCTGGGCGGTGGGTTT
TTGACCCGATAGGCAATCATCGAAAGGTATCAGAGAATGAGGAAGAGAAC
AGCAGCAGCGAGGGGGGGGGGTGAAAACGAGGACAAAGGAGAACGAACTA
AGCCACCATATAAAGGATGAGGACCGTGCGTGAATCATTGTTAAACTTGC
AGCAAACAGCAAAGCTGAAGCCAAGAGGAGTGCCCGCGCAGAGCACATCC
GAAGTGGCAGGGTAGAGGCGCGAGGTGGAAAGATAAGAATAGGATGAGGA
GGTGCTCACTCGGTAGCAGTGAGAGAGATGGATGGCCTCACAAACTTTTT
TGTACAAGCGGAGAGAGTT
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Coding sequence (CDS) from alignment at chr9:556038..557256+

>NO09G01810.1 ID=NO09G01810.1|Name=NO09G01810.1|organism=Nannochloropsis oceanica|type=CDS|length=375bp|location=Sequence derived from alignment at chr9:556038..557256+ (Nannochloropsis oceanica)
ATGTCCCGCTCTGTTGCCTTCCTCTGTGCCATGGCCCTCGCCTCCCTGTG
CGGCCTCGTCGCTGCCTTCAGACCAGCAGGCTTCCTGCCGGCAATCAGCG
CCAGCACCGCTCGGCCTGTCTCCGTCACCCGTTATCTCTCCCCCTCCACC
TTCTCCTCAAGACAGAGCAGGAGCAGCAGGAGCAGGTTGTTCGAGGGGCC
CCCTTCCCGCCCTACCCGTGAGAATGAGCCAGATGAGTATTTCAAGTCCA
ACCTGGAAAAGAAGGATTTAGCCGAGCGTCTCGTCGACCCACAAGTTGTT
ATTGCTGTGGTGAGCATCCTGGCACCTTTTGTGGCCGTGGGGGTGTTGCT
GGGCGGTGGGTTTTTGACCCGATAG
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Synonyms
Publications