NO09G01780, NO09G01780 (gene) Nannochloropsis oceanica

Overview
NameNO09G01780
Unique NameNO09G01780
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1127
Alignment locationchr9:552624..553750 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:552624..553750 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO09G01780 vs. NCBI_GenBank
Match: XP_005853609.1 (hypothetical protein NGA_0252402 [Nannochloropsis gaditana CCMP526] >EKU22748.1 hypothetical protein NGA_0252402 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 211.1 bits (536), Expect = 2.400e-51
Identity = 105/148 (70.95%), Postives = 129/148 (87.16%), Query Frame = 0 
Query:    1 MLYLRFSVLALLAASAFSFMPPTPRVARPALTAVY--AEKNIIVQADTCLNGECSIDDVNDLLIQLRVQVKNLKSQVGELEKYEQQLTQMNGTPAARDALKDIIKAVLRAMDVDPEDTNFPQIVKAAGFAGDKFRGKGSYDGMPYKKA 147
            M++LR S+LALLAAS F+F+PP PRV R A   V+  AEKN I +AD CLNGECSIDDVNDLLIQLRV++K+LK+++ E+E  EQQLTQMNG P A+DA++DIIKAVLRAMDVDPED++FPQIV+AAGFAG+KF+ KGS+DG+PYKKA
Sbjct:    1 MMFLRLSILALLAASVFAFVPPAPRVIRSASQVVFAEAEKNFITEADNCLNGECSIDDVNDLLIQLRVEIKSLKTKLAEVEACEQQLTQMNGAPLAKDAVRDIIKAVLRAMDVDPEDSSFPQIVRAAGFAGEKFKKKGSFDGVPYKKA 148
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BLAST of NO09G01780 vs. NCBI_GenBank
Match: EWM27611.1 (hypothetical protein Naga_100069g15 [Nannochloropsis gaditana])

HSP 1 Score: 209.5 bits (532), Expect = 6.900e-51
Identity = 104/148 (70.27%), Postives = 128/148 (86.49%), Query Frame = 0 
Query:    1 MLYLRFSVLALLAASAFSFMPPTPRVARPALTAVY--AEKNIIVQADTCLNGECSIDDVNDLLIQLRVQVKNLKSQVGELEKYEQQLTQMNGTPAARDALKDIIKAVLRAMDVDPEDTNFPQIVKAAGFAGDKFRGKGSYDGMPYKKA 147
            M++LR S+ ALLAAS F+F+PP PRV R A   V+  AEKN I +AD CLNGECSIDDVNDLLIQLRV++K+LK+++ E+E  EQQLTQMNG P A+DA++DIIKAVLRAMDVDPED++FPQIV+AAGFAG+KF+ KGS+DG+PYKKA
Sbjct:   21 MMFLRLSIFALLAASVFAFVPPAPRVIRSASQVVFAEAEKNFITEADNCLNGECSIDDVNDLLIQLRVEIKSLKTKLAEVEACEQQLTQMNGAPLAKDAVRDIIKAVLRAMDVDPEDSSFPQIVRAAGFAGEKFKKKGSFDGVPYKKA 168
The following BLAST results are available for this feature:
BLAST of NO09G01780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005853609.12.400e-5170.95hypothetical protein NGA_0252402 [Nannochloropsis ... [more]
EWM27611.16.900e-5170.27hypothetical protein Naga_100069g15 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL121nonsL121Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR128ngnoR128Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010698NSK010698Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G01780.1NO09G01780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|22485gene_4373Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100069g15gene2953Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G01780.1NO09G01780.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G01780 ID=NO09G01780|Name=NO09G01780|organism=Nannochloropsis oceanica|type=gene|length=1127bp
ACAGCCACACATTAGCAAACCGCTTTGCAGCCATGCTTTACCTGCGTTTC
TCTGTCCTCGCCCTCCTGGCCGCCTCTGCCTTTTCCTTCATGCCCCCTAC
CCCTCGTGTCGCTCGCCCCGCCTTGACTGCCGTCTACGCGGAGAAGAATA
TCATCGTGgtacgtccccgtcctctgcactgatcatgtatcgaccaattc
agcatagaaataaaccacattgtcgtcctcaaagcatgggtttgcctctg
tcggtttcgcctccgtactttgccacacctcactccccctcgcccttctt
caacattctgacttcatcgccactcatctaaactacacctctaccccaca
catgacagCAAGCTGACACCTGCCTGAACGGTGAGTGCAGCATTGATGAC
GTAAACGACTTGCTGATCCAGCTCCGCGTGCAAGTCAAGAACCTGAAGTC
GCAAGTGGGGGAGTTGGAAAAGTACGAGCAGCAACTGACTCAAATGAACG
GCACGCCAGCGGCGCGGGACGCATTGAAAGACATCATCAAGgtaggaacc
taggaggaacaaaagacaagaaagaaggaagaaaacggtctcatacctct
tccctaccctcccccttacatttattttaatctcatgcctccacagGCAG
TCTTGAGGGCGATGGACGTGGACCCAGAAGACACTAACTTCCCCCAGATC
GTCAAGGCGGCTGGCTTTGCCGGGGACAAGTTTAGAGGGAAGGGCTCGTA
TGATGGCATGCCCTACAAGAAGGCGTAAGCCAGAGGACCTGAGACACGTA
GAGAGAGGAGATGAGAGGATACTTACAATTGCACACACAGGTCTGCTAGC
CATCAGCCAGTGCGAAACTAGAAGGGAGGTGGAGGGAGGATGGGAGAAAG
GGAGGAAAGAAAATGGGAGAAGGTTCCTACCTTGGCCATCCACTTTTCCA
TCCATTCATTTATACGGTGATGCTTAATTTGTTCAACTTTTGCTACATCT
TGCTATTGTTCAACAACACTTAGATACAGCAGCAGACAGCAGACACACGA
CTACGAGTGCAAATTAAAAAAAGACCCAACAATTGCGACAAATATATGTG
GTGGTGATGCAATTCACTGTGCCCGAG
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protein sequence of NO09G01780.1

>NO09G01780.1-protein ID=NO09G01780.1-protein|Name=NO09G01780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=147bp
MLYLRFSVLALLAASAFSFMPPTPRVARPALTAVYAEKNIIVQADTCLNG
ECSIDDVNDLLIQLRVQVKNLKSQVGELEKYEQQLTQMNGTPAARDALKD
IIKAVLRAMDVDPEDTNFPQIVKAAGFAGDKFRGKGSYDGMPYKKA*
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Synonyms
Publications