NO09G01780.1, NO09G01780.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01780.1
Unique NameNO09G01780.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length822
Alignment locationchr9:552624..553750 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:552624..553750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G01780.1 vs.
Match: XP_005853609.1 (hypothetical protein NGA_0252402 [Nannochloropsis gaditana CCMP526]; EKU22748.1 hypothetical protein NGA_0252402 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 211.1 bits (536), Expect = 2.400e-51
Identity = 105/148 (70.95%), Postives = 129/148 (87.16%), Query Frame = 0
Query:    1 MLYLRFSVLALLAASAFSFMPPTPRVARPALTAVYAE--KNIIVQADTCLNGECSIDDVNDLLIQLRVQVKNLKSQVGELEKYEQQLTQMNGTPAARDALKDIIKAVLRAMDVDPEDTNFPQIVKAAGFAGDKFRGKGSYDGMPYKKA 147
            M++LR S+LALLAAS F+F+PP PRV R A   V+AE  KN I +AD CLNGECSIDDVNDLLIQLRV++K+LK+++ E+E  EQQLTQMNG P A+DA++DIIKAVLRAMDVDPED++FPQIV+AAGFAG+KF+ KGS+DG+PYKKA
Sbjct:    1 MMFLRLSILALLAASVFAFVPPAPRVIRSASQVVFAEAEKNFITEADNCLNGECSIDDVNDLLIQLRVEIKSLKTKLAEVEACEQQLTQMNGAPLAKDAVRDIIKAVLRAMDVDPEDSSFPQIVRAAGFAGEKFKKKGSFDGVPYKKA 148          
The following BLAST results are available for this feature:
BLAST of NO09G01780.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853609.12.400e-5170.95hypothetical protein NGA_0252402 [Nannochloropsis ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01780NO09G01780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01780.1NO09G01780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01780.1.cds1NO09G01780.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01780.1.cds2NO09G01780.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01780.1.cds3NO09G01780.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01780.1 ID=NO09G01780.1|Name=NO09G01780.1|organism=Nannochloropsis oceanica|type=mRNA|length=822bp
ACAGCCACACATTAGCAAACCGCTTTGCAGCCATGCTTTACCTGCGTTTC
TCTGTCCTCGCCCTCCTGGCCGCCTCTGCCTTTTCCTTCATGCCCCCTAC
CCCTCGTGTCGCTCGCCCCGCCTTGACTGCCGTCTACGCGGAGAAGAATA
TCATCGTGCAAGCTGACACCTGCCTGAACGGTGAGTGCAGCATTGATGAC
GTAAACGACTTGCTGATCCAGCTCCGCGTGCAAGTCAAGAACCTGAAGTC
GCAAGTGGGGGAGTTGGAAAAGTACGAGCAGCAACTGACTCAAATGAACG
GCACGCCAGCGGCGCGGGACGCATTGAAAGACATCATCAAGGCAGTCTTG
AGGGCGATGGACGTGGACCCAGAAGACACTAACTTCCCCCAGATCGTCAA
GGCGGCTGGCTTTGCCGGGGACAAGTTTAGAGGGAAGGGCTCGTATGATG
GCATGCCCTACAAGAAGGCGTAAGCCAGAGGACCTGAGACACGTAGAGAG
AGGAGATGAGAGGATACTTACAATTGCACACACAGGTCTGCTAGCCATCA
GCCAGTGCGAAACTAGAAGGGAGGTGGAGGGAGGATGGGAGAAAGGGAGG
AAAGAAAATGGGAGAAGGTTCCTACCTTGGCCATCCACTTTTCCATCCAT
TCATTTATACGGTGATGCTTAATTTGTTCAACTTTTGCTACATCTTGCTA
TTGTTCAACAACACTTAGATACAGCAGCAGACAGCAGACACACGACTACG
AGTGCAAATTAAAAAAAGACCCAACAATTGCGACAAATATATGTGGTGGT
GATGCAATTCACTGTGCCCGAG
back to top

protein sequence of NO09G01780.1

>NO09G01780.1-protein ID=NO09G01780.1-protein|Name=NO09G01780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=147bp
MLYLRFSVLALLAASAFSFMPPTPRVARPALTAVYAEKNIIVQADTCLNG
ECSIDDVNDLLIQLRVQVKNLKSQVGELEKYEQQLTQMNGTPAARDALKD
IIKAVLRAMDVDPEDTNFPQIVKAAGFAGDKFRGKGSYDGMPYKKA*
back to top

mRNA from alignment at chr9:552624..553750-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01780.1 ID=NO09G01780.1|Name=NO09G01780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1127bp|location=Sequence derived from alignment at chr9:552624..553750- (Nannochloropsis oceanica)
ACAGCCACACATTAGCAAACCGCTTTGCAGCCATGCTTTACCTGCGTTTC TCTGTCCTCGCCCTCCTGGCCGCCTCTGCCTTTTCCTTCATGCCCCCTAC CCCTCGTGTCGCTCGCCCCGCCTTGACTGCCGTCTACGCGGAGAAGAATA TCATCGTGGTACGTCCCCGTCCTCTGCACTGATCATGTATCGACCAATTC AGCATAGAAATAAACCACATTGTCGTCCTCAAAGCATGGGTTTGCCTCTG TCGGTTTCGCCTCCGTACTTTGCCACACCTCACTCCCCCTCGCCCTTCTT CAACATTCTGACTTCATCGCCACTCATCTAAACTACACCTCTACCCCACA CATGACAGCAAGCTGACACCTGCCTGAACGGTGAGTGCAGCATTGATGAC GTAAACGACTTGCTGATCCAGCTCCGCGTGCAAGTCAAGAACCTGAAGTC GCAAGTGGGGGAGTTGGAAAAGTACGAGCAGCAACTGACTCAAATGAACG GCACGCCAGCGGCGCGGGACGCATTGAAAGACATCATCAAGGTAGGAACC TAGGAGGAACAAAAGACAAGAAAGAAGGAAGAAAACGGTCTCATACCTCT TCCCTACCCTCCCCCTTACATTTATTTTAATCTCATGCCTCCACAGGCAG TCTTGAGGGCGATGGACGTGGACCCAGAAGACACTAACTTCCCCCAGATC GTCAAGGCGGCTGGCTTTGCCGGGGACAAGTTTAGAGGGAAGGGCTCGTA TGATGGCATGCCCTACAAGAAGGCGTAAGCCAGAGGACCTGAGACACGTA GAGAGAGGAGATGAGAGGATACTTACAATTGCACACACAGGTCTGCTAGC CATCAGCCAGTGCGAAACTAGAAGGGAGGTGGAGGGAGGATGGGAGAAAG GGAGGAAAGAAAATGGGAGAAGGTTCCTACCTTGGCCATCCACTTTTCCA TCCATTCATTTATACGGTGATGCTTAATTTGTTCAACTTTTGCTACATCT TGCTATTGTTCAACAACACTTAGATACAGCAGCAGACAGCAGACACACGA CTACGAGTGCAAATTAAAAAAAGACCCAACAATTGCGACAAATATATGTG GTGGTGATGCAATTCACTGTGCCCGAG
back to top

Coding sequence (CDS) from alignment at chr9:552624..553750-

>NO09G01780.1 ID=NO09G01780.1|Name=NO09G01780.1|organism=Nannochloropsis oceanica|type=CDS|length=441bp|location=Sequence derived from alignment at chr9:552624..553750- (Nannochloropsis oceanica)
ATGCTTTACCTGCGTTTCTCTGTCCTCGCCCTCCTGGCCGCCTCTGCCTT
TTCCTTCATGCCCCCTACCCCTCGTGTCGCTCGCCCCGCCTTGACTGCCG
TCTACGCGGAGAAGAATATCATCGTGCAAGCTGACACCTGCCTGAACGGT
GAGTGCAGCATTGATGACGTAAACGACTTGCTGATCCAGCTCCGCGTGCA
AGTCAAGAACCTGAAGTCGCAAGTGGGGGAGTTGGAAAAGTACGAGCAGC
AACTGACTCAAATGAACGGCACGCCAGCGGCGCGGGACGCATTGAAAGAC
ATCATCAAGGCAGTCTTGAGGGCGATGGACGTGGACCCAGAAGACACTAA
CTTCCCCCAGATCGTCAAGGCGGCTGGCTTTGCCGGGGACAAGTTTAGAG
GGAAGGGCTCGTATGATGGCATGCCCTACAAGAAGGCGTAA
back to top
Synonyms
Publications