NO09G01640, NO09G01640 (gene) Nannochloropsis oceanica

Overview
NameNO09G01640
Unique NameNO09G01640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1527
Alignment locationchr9:516243..517769 +

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Properties
Property NameValue
DescriptionRNA-binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:516243..517769 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR002942S4_RNA-bd
Homology
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BLAST of NO09G01640 vs. NCBI_GenBank
Match: EWM27562.1 (RNA-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 408.7 bits (1049), Expect = 1.600e-110
Identity = 235/296 (79.39%), Postives = 254/296 (85.81%), Query Frame = 0 
Query:    3 TSSMRAPLLLGVAFLLLCLAHTTEAFLP-FVSSSSSCRIRSGASVQPLAVKRAGRXXXXXXXXXXXXXXG-------KRGKNDGAEASKDPEKRLANLNRKLTSILELEEVPFEDLNEDQRRKVERKEDVLQEISRLTKRMRKEDFIEEAAEQRAGALSAEDLNDDVVGGKIPRTILKLLVYCRLSDRATCEILLELGKVKVNGVVCDDPVALVDLVKDTIEFDGELVTLPETRLKHKLRSMTTQGQAEDDAESGVPKDYCARIDGGLLIDLTRNIQKSRGDYVDKSPYIMRDAQR 291
            T++ R+   L   F+LLCL HTT AFLP  + + +S RIRSGASVQPL VKR GR   XXXXXXXXXXX        +R  NDGAEASKDPEKRL NLNRKLTSILELE + +EDLNEDQRRKV+RKE+VL+EISRLTKR+RKEDFIEEAAEQRAGA SAEDLNDDVVGG+IPRTILKLLVYCRLSD+ATCEILLELGKVKVNGVVCDDPVALVDLVKD IEFDGE VTLPETRLKHKLRS+  QG+  DD + G PKDYCARIDGGLLIDLTRNIQKSRGDYVDKSPYIMRDAQR
Sbjct:   42 TTTKRSTPQLFFVFVLLCLVHTTVAFLPQSLRTPTSWRIRSGASVQPLRVKRQGRRGGXXXXXXXXXXXXXXKFGSRRRNTNDGAEASKDPEKRLINLNRKLTSILELERISYEDLNEDQRRKVDRKEEVLEEISRLTKRVRKEDFIEEAAEQRAGATSAEDLNDDVVGGRIPRTILKLLVYCRLSDKATCEILLELGKVKVNGVVCDDPVALVDLVKDKIEFDGEPVTLPETRLKHKLRSIAAQGEG-DDLDDGAPKDYCARIDGGLLIDLTRNIQKSRGDYVDKSPYIMRDAQR 336
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BLAST of NO09G01640 vs. NCBI_GenBank
Match: CBJ32469.1 (hypothetical protein Esi_0341_0019 [Ectocarpus siliculosus])

HSP 1 Score: 70.1 bits (170), Expect = 1.400e-8
Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 0 
Query:  138 EDFIEEAAEQRAGALSAEDLNDDVVGGKIPRTILKLLVYCRLSDRATCEILLELGKVKVNGVVCDDPVALVDLVKDTIEFDGELVTLPET 228
            E+  E+A     G   A  + +   GG  P+ +  L+ +CR+SD+ATCEIL+E+G+V VNGVV  DP   VDL+ D +  +G  VT P T
Sbjct:  223 EEGFEDAGGSSEGREEARPMVEAPAGG-YPKRLAGLMSFCRVSDKATCEILVEMGRVTVNGVVARDPGIKVDLLTDIVVANGVAVTFPGT 311
The following BLAST results are available for this feature:
BLAST of NO09G01640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM27562.11.600e-11079.39RNA-binding protein [Nannochloropsis gaditana][more]
CBJ32469.11.400e-842.22hypothetical protein Esi_0341_0019 [Ectocarpus sil... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL121nonsL121Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR128ngnoR128Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010712NSK010712Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G01640.1NO09G01640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670759gene_4387Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100015g74gene2967Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G01640.1NO09G01640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G01640 ID=NO09G01640|Name=NO09G01640|organism=Nannochloropsis oceanica|type=gene|length=1527bp
ATGGTCACCAGCAGCATGCGGGCACCCCTGCTCCTCGGCGTTGCCTTTCT
CCTCCTCTGCTTGGCTCACACCACAGAGGCCTTTCTACCATTTGTCTCGT
CTTCATCGTCCTGCCGGATACGGAGCGGGGCGAGCGTGCAGCCGTTGGCT
GTAAAGCGAGCAGGCCGTCGTAGCGGTGGCAGCGGCGGGAGCAGCAGTGG
AGGTGGCTTTGGAAAGAGAGGAAAGAACGATGGAGCAGAAGCCTCTAAGG
ACCCTGAAAAGCGCTTGGCTAACTTGAATAGGAAACTGACCAGCATTTTG
GAGgtccgtacgtggatgggggttgaggatgaggattcttggatagagag
atggcgcgtggaagaagcagcggatagctctagggccttcttctgaaagg
atcaagctcactagtattgctcatcccatgtttcttccatacacacatac
acagCTGGAGGAGGTGCCGTTTGAGGATCTGAATGAGGATCAACGCCGCA
AAGTGGAACGGAAGGAGGACGTGCTGCAGGAAATCAGTCGCTTAACGAAG
CGGATGCGCAAGGAGGACTTCATgtacgttcgtaaaaaggaggaaatctt
gcacctgcactttaacaatattttgaaatgtgtttgcggttgtccagaag
cccggctcaaccgattttttttactgtgtcttcttgagtttcctgcactg
acacattcagctcttgtcctcatgcggcgtggcttatgtttacccacccc
atggatacgtctggttgatacacttttatcaacatataccgctaagtggc
cctctctgtgtgatgcgatgatggccaggctggtaggcagtgcgactgga
ctacctgccagcaagaaaagctccaaagacatagcccttgctccgtttcc
acgtcccctccccttctccctccttttcagtcactaagtcgactataagt
tgactatggttgtgtcaaaacattaatactttaccattctcccttctttg
ccccgctctaccaaacacacaacagAGAGGAAGCAGCTGAGCAACGCGCT
GGTGCATTGTCCGCCGAAGACCTTAACGATGACGTGGTGGGCGGCAAAAT
TCCCCGCACCATTCTGAAGCTCTTGGTCTACTGCCGCTTATCCGATAGAG
CCACCTGTGAAATTCTCCTTGAGCTTGGCAAGGTGAAGGTGAATGGCGTG
GTGTGTGACGATCCCGTCGCGCTTGTGGACCTCGTGAAGGACACGATTGA
ATTCGACGGGGAGCTCGTGACGCTCCCTGAGACACGGTTGAAGCATAAGT
TGCGTTCGATGACGACACAGGGACAGGCGGAGGATGACGCAGAGAGTGGC
GTGCCCAAAGATTATTGTGCGCGAATCGATGGTGGGCTGCTCATTGACTT
GACACGCAACATCCAAAAGTCACGGGGGGATTACGTGGACAAGAGCCCGT
ATATCATGCGGGATGCGCAAAGGAATGGCGGGGGCTTCGGGGGTGGGGGA
GGGAATCATCGAGGTGGGAGGCGGTGA
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protein sequence of NO09G01640.1

>NO09G01640.1-protein ID=NO09G01640.1-protein|Name=NO09G01640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=308bp
MVTSSMRAPLLLGVAFLLLCLAHTTEAFLPFVSSSSSCRIRSGASVQPLA
VKRAGRRSGGSGGSSSGGGFGKRGKNDGAEASKDPEKRLANLNRKLTSIL
ELEEVPFEDLNEDQRRKVERKEDVLQEISRLTKRMRKEDFIEEAAEQRAG
ALSAEDLNDDVVGGKIPRTILKLLVYCRLSDRATCEILLELGKVKVNGVV
CDDPVALVDLVKDTIEFDGELVTLPETRLKHKLRSMTTQGQAEDDAESGV
PKDYCARIDGGLLIDLTRNIQKSRGDYVDKSPYIMRDAQRNGGGFGGGGG
NHRGGRR*
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Synonyms
Publications