NO09G01640.1, NO09G01640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01640.1
Unique NameNO09G01640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length924
Alignment locationchr9:516243..517769 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:516243..517769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G01640.1 vs.
Match: EWM27562.1 (RNA-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 425.2 bits (1092), Expect = 1.700e-115
Identity = 240/310 (77.42%), Postives = 263/310 (84.84%), Query Frame = 0 
Query:    3 TSSMRAPLLLGVAFLLLCLAHTTEAFLP-FVSSSSSCRIRSGASVQPLAVKRAGRRSGGSGG-----SSSGGGFG--KRGKNDGAEASKDPEKRLANLNRKLTSILELEEVPFEDLNEDQRRKVERKEDVLQEISRLTKRMRKEDFIEEAAEQRAGALSAEDLNDDVVGGKIPRTILKLLVYCRLSDRATCEILLELGKVKVNGVVCDDPVALVDLVKDTIEFDGELVTLPETRLKHKLRSMTTQGQAEDDAESGVPKDYCARIDGGLLIDLTRNIQKSRGDYVDKSPYIMRDAQRNGGGFGGGGGNHRG 305
            T++ R+   L   F+LLCL HTT AFLP  + + +S RIRSGASVQPL VKR GRR GG  G     S++GG FG  +R  NDGAEASKDPEKRL NLNRKLTSILELE + +EDLNEDQRRKV+RKE+VL+EISRLTKR+RKEDFIEEAAEQRAGA SAEDLNDDVVGG+IPRTILKLLVYCRLSD+ATCEILLELGKVKVNGVVCDDPVALVDLVKD IEFDGE VTLPETRLKHKLRS+  QG+  DD + G PKDYCARIDGGLLIDLTRNIQKSRGDYVDKSPYIMRDAQR+GG   GG G+ RG
Sbjct:   42 TTTKRSTPQLFFVFVLLCLVHTTVAFLPQSLRTPTSWRIRSGASVQPLRVKRQGRRGGGGSGTGRGNSNTGGKFGSRRRNTNDGAEASKDPEKRLINLNRKLTSILELERISYEDLNEDQRRKVDRKEEVLEEISRLTKRVRKEDFIEEAAEQRAGATSAEDLNDDVVGGRIPRTILKLLVYCRLSDKATCEILLELGKVKVNGVVCDDPVALVDLVKDKIEFDGEPVTLPETRLKHKLRSIAAQGEG-DDLDDGAPKDYCARIDGGLLIDLTRNIQKSRGDYVDKSPYIMRDAQRHGG--MGGSGSRRG 348
The following BLAST results are available for this feature:
BLAST of NO09G01640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27562.11.700e-11577.42RNA-binding protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01640NO09G01640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01640.1NO09G01640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01640.1.cds1NO09G01640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01640.1.cds2NO09G01640.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01640.1.cds3NO09G01640.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01640.1 ID=NO09G01640.1|Name=NO09G01640.1|organism=Nannochloropsis oceanica|type=mRNA|length=924bp
ATGGTCACCAGCAGCATGCGGGCACCCCTGCTCCTCGGCGTTGCCTTTCT
CCTCCTCTGCTTGGCTCACACCACAGAGGCCTTTCTACCATTTGTCTCGT
CTTCATCGTCCTGCCGGATACGGAGCGGGGCGAGCGTGCAGCCGTTGGCT
GTAAAGCGAGCAGGCCGTCGTAGCGGTGGCAGCGGCGGGAGCAGCAGTGG
AGGTGGCTTTGGAAAGAGAGGAAAGAACGATGGAGCAGAAGCCTCTAAGG
ACCCTGAAAAGCGCTTGGCTAACTTGAATAGGAAACTGACCAGCATTTTG
GAGCTGGAGGAGGTGCCGTTTGAGGATCTGAATGAGGATCAACGCCGCAA
AGTGGAACGGAAGGAGGACGTGCTGCAGGAAATCAGTCGCTTAACGAAGC
GGATGCGCAAGGAGGACTTCATAGAGGAAGCAGCTGAGCAACGCGCTGGT
GCATTGTCCGCCGAAGACCTTAACGATGACGTGGTGGGCGGCAAAATTCC
CCGCACCATTCTGAAGCTCTTGGTCTACTGCCGCTTATCCGATAGAGCCA
CCTGTGAAATTCTCCTTGAGCTTGGCAAGGTGAAGGTGAATGGCGTGGTG
TGTGACGATCCCGTCGCGCTTGTGGACCTCGTGAAGGACACGATTGAATT
CGACGGGGAGCTCGTGACGCTCCCTGAGACACGGTTGAAGCATAAGTTGC
GTTCGATGACGACACAGGGACAGGCGGAGGATGACGCAGAGAGTGGCGTG
CCCAAAGATTATTGTGCGCGAATCGATGGTGGGCTGCTCATTGACTTGAC
ACGCAACATCCAAAAGTCACGGGGGGATTACGTGGACAAGAGCCCGTATA
TCATGCGGGATGCGCAAAGGAATGGCGGGGGCTTCGGGGGTGGGGGAGGG
AATCATCGAGGTGGGAGGCGGTGA
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protein sequence of NO09G01640.1

>NO09G01640.1-protein ID=NO09G01640.1-protein|Name=NO09G01640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=308bp
MVTSSMRAPLLLGVAFLLLCLAHTTEAFLPFVSSSSSCRIRSGASVQPLA
VKRAGRRSGGSGGSSSGGGFGKRGKNDGAEASKDPEKRLANLNRKLTSIL
ELEEVPFEDLNEDQRRKVERKEDVLQEISRLTKRMRKEDFIEEAAEQRAG
ALSAEDLNDDVVGGKIPRTILKLLVYCRLSDRATCEILLELGKVKVNGVV
CDDPVALVDLVKDTIEFDGELVTLPETRLKHKLRSMTTQGQAEDDAESGV
PKDYCARIDGGLLIDLTRNIQKSRGDYVDKSPYIMRDAQRNGGGFGGGGG
NHRGGRR*
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mRNA from alignment at chr9:516243..517769+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01640.1 ID=NO09G01640.1|Name=NO09G01640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1527bp|location=Sequence derived from alignment at chr9:516243..517769+ (Nannochloropsis oceanica)
ATGGTCACCAGCAGCATGCGGGCACCCCTGCTCCTCGGCGTTGCCTTTCT
CCTCCTCTGCTTGGCTCACACCACAGAGGCCTTTCTACCATTTGTCTCGT
CTTCATCGTCCTGCCGGATACGGAGCGGGGCGAGCGTGCAGCCGTTGGCT
GTAAAGCGAGCAGGCCGTCGTAGCGGTGGCAGCGGCGGGAGCAGCAGTGG
AGGTGGCTTTGGAAAGAGAGGAAAGAACGATGGAGCAGAAGCCTCTAAGG
ACCCTGAAAAGCGCTTGGCTAACTTGAATAGGAAACTGACCAGCATTTTG
GAGGTCCGTACGTGGATGGGGGTTGAGGATGAGGATTCTTGGATAGAGAG
ATGGCGCGTGGAAGAAGCAGCGGATAGCTCTAGGGCCTTCTTCTGAAAGG
ATCAAGCTCACTAGTATTGCTCATCCCATGTTTCTTCCATACACACATAC
ACAGCTGGAGGAGGTGCCGTTTGAGGATCTGAATGAGGATCAACGCCGCA
AAGTGGAACGGAAGGAGGACGTGCTGCAGGAAATCAGTCGCTTAACGAAG
CGGATGCGCAAGGAGGACTTCATGTACGTTCGTAAAAAGGAGGAAATCTT
GCACCTGCACTTTAACAATATTTTGAAATGTGTTTGCGGTTGTCCAGAAG
CCCGGCTCAACCGATTTTTTTTACTGTGTCTTCTTGAGTTTCCTGCACTG
ACACATTCAGCTCTTGTCCTCATGCGGCGTGGCTTATGTTTACCCACCCC
ATGGATACGTCTGGTTGATACACTTTTATCAACATATACCGCTAAGTGGC
CCTCTCTGTGTGATGCGATGATGGCCAGGCTGGTAGGCAGTGCGACTGGA
CTACCTGCCAGCAAGAAAAGCTCCAAAGACATAGCCCTTGCTCCGTTTCC
ACGTCCCCTCCCCTTCTCCCTCCTTTTCAGTCACTAAGTCGACTATAAGT
TGACTATGGTTGTGTCAAAACATTAATACTTTACCATTCTCCCTTCTTTG
CCCCGCTCTACCAAACACACAACAGAGAGGAAGCAGCTGAGCAACGCGCT
GGTGCATTGTCCGCCGAAGACCTTAACGATGACGTGGTGGGCGGCAAAAT
TCCCCGCACCATTCTGAAGCTCTTGGTCTACTGCCGCTTATCCGATAGAG
CCACCTGTGAAATTCTCCTTGAGCTTGGCAAGGTGAAGGTGAATGGCGTG
GTGTGTGACGATCCCGTCGCGCTTGTGGACCTCGTGAAGGACACGATTGA
ATTCGACGGGGAGCTCGTGACGCTCCCTGAGACACGGTTGAAGCATAAGT
TGCGTTCGATGACGACACAGGGACAGGCGGAGGATGACGCAGAGAGTGGC
GTGCCCAAAGATTATTGTGCGCGAATCGATGGTGGGCTGCTCATTGACTT
GACACGCAACATCCAAAAGTCACGGGGGGATTACGTGGACAAGAGCCCGT
ATATCATGCGGGATGCGCAAAGGAATGGCGGGGGCTTCGGGGGTGGGGGA
GGGAATCATCGAGGTGGGAGGCGGTGA
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Coding sequence (CDS) from alignment at chr9:516243..517769+

>NO09G01640.1 ID=NO09G01640.1|Name=NO09G01640.1|organism=Nannochloropsis oceanica|type=CDS|length=924bp|location=Sequence derived from alignment at chr9:516243..517769+ (Nannochloropsis oceanica)
ATGGTCACCAGCAGCATGCGGGCACCCCTGCTCCTCGGCGTTGCCTTTCT
CCTCCTCTGCTTGGCTCACACCACAGAGGCCTTTCTACCATTTGTCTCGT
CTTCATCGTCCTGCCGGATACGGAGCGGGGCGAGCGTGCAGCCGTTGGCT
GTAAAGCGAGCAGGCCGTCGTAGCGGTGGCAGCGGCGGGAGCAGCAGTGG
AGGTGGCTTTGGAAAGAGAGGAAAGAACGATGGAGCAGAAGCCTCTAAGG
ACCCTGAAAAGCGCTTGGCTAACTTGAATAGGAAACTGACCAGCATTTTG
GAGCTGGAGGAGGTGCCGTTTGAGGATCTGAATGAGGATCAACGCCGCAA
AGTGGAACGGAAGGAGGACGTGCTGCAGGAAATCAGTCGCTTAACGAAGC
GGATGCGCAAGGAGGACTTCATAGAGGAAGCAGCTGAGCAACGCGCTGGT
GCATTGTCCGCCGAAGACCTTAACGATGACGTGGTGGGCGGCAAAATTCC
CCGCACCATTCTGAAGCTCTTGGTCTACTGCCGCTTATCCGATAGAGCCA
CCTGTGAAATTCTCCTTGAGCTTGGCAAGGTGAAGGTGAATGGCGTGGTG
TGTGACGATCCCGTCGCGCTTGTGGACCTCGTGAAGGACACGATTGAATT
CGACGGGGAGCTCGTGACGCTCCCTGAGACACGGTTGAAGCATAAGTTGC
GTTCGATGACGACACAGGGACAGGCGGAGGATGACGCAGAGAGTGGCGTG
CCCAAAGATTATTGTGCGCGAATCGATGGTGGGCTGCTCATTGACTTGAC
ACGCAACATCCAAAAGTCACGGGGGGATTACGTGGACAAGAGCCCGTATA
TCATGCGGGATGCGCAAAGGAATGGCGGGGGCTTCGGGGGTGGGGGAGGG
AATCATCGAGGTGGGAGGCGGTGA
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Synonyms
Publications