NO09G01580, NO09G01580 (gene) Nannochloropsis oceanica

Overview
NameNO09G01580
Unique NameNO09G01580
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2166
Alignment locationchr9:499048..501213 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:499048..501213 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO09G01580 vs. NCBI_GenBank
Match: EWM27622.1 (hypothetical protein Naga_100256g8, partial [Nannochloropsis gaditana])

HSP 1 Score: 277.7 bits (709), Expect = 9.200e-71
Identity = 134/176 (76.14%), Postives = 161/176 (91.48%), Query Frame = 0 
Query:  462 VEAMQHALWVFEVRAGFLERLVGQEAYRNELIRRVRQETAGSAEEFLERYPAYGGHLSEVLDGWGEIEAELWEGVNVDDKEDQMVEMLKARGRAMVYVQNKMASFRPPTIPPVMTERAVESRVEARAKLAAEELEKLEALSDEEVKRHWEAYEAYVMKRFPSVRKDVENLQNSRAA 638
            VEAMQ ALWVFEVR+GFLERLVG+EAYR+E+IRRVR+ETAGSA EFL+RYP Y  HL+EVLDGWGEI  E W+GV++D+KEDQMVEMLK RGRAMVYVQ+KMA+FRPP++PPV+TERA ESR EARAKLA EE  +LE+LSDEEVKRHWEAYEAYV+KRFP +R+++EN++N+RA+
Sbjct:   44 VEAMQQALWVFEVRSGFLERLVGKEAYRSEMIRRVRKETAGSAPEFLDRYPMYADHLNEVLDGWGEITTEEWKGVDIDNKEDQMVEMLKVRGRAMVYVQSKMATFRPPSVPPVLTERATESREEARAKLAEEEEARLESLSDEEVKRHWEAYEAYVVKRFPQLREEIENMRNNRAS 219
The following BLAST results are available for this feature:
BLAST of NO09G01580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27622.19.200e-7176.14hypothetical protein Naga_100256g8, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010654NSK010654Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G01580.1NO09G01580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|22960gene_4394Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100256g8gene2932Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G01580.1NO09G01580.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G01580 ID=NO09G01580|Name=NO09G01580|organism=Nannochloropsis oceanica|type=gene|length=2166bp
ATGAAATCAAGGTGCCATTTGATAGGGTGCGGCGGATGCTTAGTGCTCCT
GGCGGCGGCGACCGTAATAAGTAGCCCTGCAGTTGCCTTCGTGCATGGCC
CACCAGCGTCGTCAGCGTTGAGAATACTCCAGTGGGCAGGTCAGGGATTG
GAAAGGACAGCAGGAGACGATCTAGACGCCATGGCAATCAGGAGTATCGG
AGGGCGAAAGCGTACTACCACCACCACGGCGGTTTTGTCCTTATGGGGCA
GCCCCCGCGTCAGTAGCAGCAGCAGCAACTACAACGACAGAGCCCCAATA
TCCCAAAGACCAAGAAGTCGCGGCAGCAGCAGCAGCAGCAGTCGTCTTTT
TGCTGGCCTAGTGGGCGGCGCCAGCGGCGGGAGTCTGACCTCCGACGGTC
GAACCAACCAGAACTTCCGCACCCTTACCGCCGACGACTTTGCTGCCAAT
CACCGCGTGGTCGATAACTCAGGGAATCCGGAAAAACGAGCGGAAATCGC
CGCGGCTCTACCAGGTGTAAACCTAGACAAGCTCTGCAAAGAAGTCCCCG
ACGTCATGTTGTGGTCTCCGGCGGAACTAGCAGCAAGAATGGCAGTCCTC
GCCGAGGCCATGCCTGGGGAGGATTTGATTAAGTGTGTGTCACAAGCCCC
CACTATCTTGACTGGTACGCCTTACTTGAAGAAGACCTTGGCCCAATTCG
CCGAATGGTTCCCGGGGAAGACTTTGGCGGAGCTGCTGCCTCGGTGTGCG
GATGCCACGTTAGGGACGGCGCCGAGGAGCTTCGAGTACCCTAAACGGTT
GGGATGGGAGGTGCCATATCTAGACCCCGGGCTCATGGGGAACTACACAG
TGGAAACAGAGCTGGTGCAGGCGATGAAAGAGAGCCAGCATTTGGTGTTT
GGGCTGTGGAAGGAGGATGGGGAGGCGTTGGAGAAGTTTGTGAAGGCGGT
GAGGAGGGCGGTGCTTGCGTTTGAGACGCGGGTTTTTTTCTTGAGGGATC
ATTATCCGCGGGCGCATTTTGAAAGgtacgtgtcaatggggccgagaagt
cgtgcgatggaaatatatgggtgctaagaggaacgttgaactgcagcgtt
tgggaggagacaaggacgtgctattcgtaggaagcgacgacagactgttg
gcgcgtgatagttacctctccctccctccctccctccctctctccctccc
ctttccttctcgtccagATATTATGCAGACGATCTCTTCGGGGAATCGGT
GGGGTTCGTCGATGAGTGGGCCAAGAAACACCCGGGCTACGACAGCTATA
TGGACGAAAAGCTTGCGGGTTACGAAAATATGGAATTCTTCCGCTTGAAA
CGTCTGCCCATCGCTGAGAAGGAGGAAATGCTGATTCAAGCACGTGCCGA
GGGGATGCTGGGACCCGATGGGGCGTATCGTGGGCGTTCGATGGCCTTGC
CGGCGGGGGCACGGGGGGAGGAAGGGGCTGAGGAGGGGGCCGAAGAAGAT
GATGGGTGGGACGATTTGGAGGATGTGGTGGATGAGACGGAGGAAGGGGG
GGCGGAAGACGACGACGACGAGTTTGTGGAGGCAATGCAGCACGCCTTGT
GGGTATTTGAGGTGCGAGCAGGGTTTTTGGAACGGTTGGTAGGACAAGAG
GCTTACAGGAATGAGTTAATTCGACGGGTAAGGCAAGAGACCGCGGGGTC
GGCAGAAGAGTTTTTAGAGCGATACCCTGCATACGGGGGCCATCTAAGCG
AGGTCTTGGATGGATGGGGAGAGATTGAAGCTGAGCTATGGGAGGGGGTT
AATGTGGATGATAAGGAGGATCAGATGGTGGAGATGTTGAAGGCGAGGGG
ACGGGCGATGGTGTACGTGCAGAATAAGATGGCTTCGTTCCGCCCGCCGA
CAATTCCGCCCGTGATGACTGAGAGGGCGGTGGAGAGTAGGGTGGAGGCG
CGGGCTAAATTGGCGGCGGAGGAGTTGGAGAAGTTGGAGGCGTTGAGTGA
TGAGGAGGTGAAGCGGCATTGGGAGGCGTACGAGGCTTATGTCATGAAGA
GGTTTCCATCGGTGAGGAAGGATGTTGAGAATTTGCAGAATAGTCGGGCA
GCCGGGGTTTTGTTTGATGATGAGGAGGATGATGAGGAGGAGGAATTTGG
GTTGGGTGGCTTTTAG
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protein sequence of NO09G01580.1

>NO09G01580.1-protein ID=NO09G01580.1-protein|Name=NO09G01580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=658bp
MKSRCHLIGCGGCLVLLAAATVISSPAVAFVHGPPASSALRILQWAGQGL
ERTAGDDLDAMAIRSIGGRKRTTTTTAVLSLWGSPRVSSSSSNYNDRAPI
SQRPRSRGSSSSSSRLFAGLVGGASGGSLTSDGRTNQNFRTLTADDFAAN
HRVVDNSGNPEKRAEIAAALPGVNLDKLCKEVPDVMLWSPAELAARMAVL
AEAMPGEDLIKCVSQAPTILTGTPYLKKTLAQFAEWFPGKTLAELLPRCA
DATLGTAPRSFEYPKRLGWEVPYLDPGLMGNYTVETELVQAMKESQHLVF
GLWKEDGEALEKFVKAVRRAVLAFETRVFFLRDHYPRAHFERYYADDLFG
ESVGFVDEWAKKHPGYDSYMDEKLAGYENMEFFRLKRLPIAEKEEMLIQA
RAEGMLGPDGAYRGRSMALPAGARGEEGAEEGAEEDDGWDDLEDVVDETE
EGGAEDDDDEFVEAMQHALWVFEVRAGFLERLVGQEAYRNELIRRVRQET
AGSAEEFLERYPAYGGHLSEVLDGWGEIEAELWEGVNVDDKEDQMVEMLK
ARGRAMVYVQNKMASFRPPTIPPVMTERAVESRVEARAKLAAEELEKLEA
LSDEEVKRHWEAYEAYVMKRFPSVRKDVENLQNSRAAGVLFDDEEDDEEE
EFGLGGF*
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Synonyms
Publications