NO09G01580.1, NO09G01580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01580.1
Unique NameNO09G01580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1974
Alignment locationchr9:499048..501213 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:499048..501213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO09G01580.1 vs.
Match: EWM27622.1 (hypothetical protein Naga_100256g8, partial [Nannochloropsis gaditana])

HSP 1 Score: 324.7 bits (831), Expect = 6.600e-85
Identity = 169/246 (68.70%), Postives = 204/246 (82.93%), Query Frame = 0 
Query:  412 YRGRSMALPAGARGEEGAEEGAEEDDGWDDLEDVVDETEEGGAEDDDDEFVEAMQHALWVFEVRAGFLERLVGQEAYRNELIRRVRQETAGSAEEFLERYPAYGGHLSEVLDGWGEIEAELWEGVNVDDKEDQMVEMLKARGRAMVYVQNKMASFRPPTIPPVMTERAVESRVEARAKLAAEELEKLEALSDEEVKRHWEAYEAYVMKRFPSVRKDVENLQNSRAAGVLFDDEEDDEEEEFGLGGF 658
            YRG S+AL  G+  EE      +EDDGWDDLED  +E EEG  E DDD  VEAMQ ALWVFEVR+GFLERLVG+EAYR+E+IRRVR+ETAGSA EFL+RYP Y  HL+EVLDGWGEI  E W+GV++D+KEDQMVEMLK RGRAMVYVQ+KMA+FRPP++PPV+TERA ESR EARAKLA EE  +LE+LSDEEVKRHWEAYEAYV+KRFP +R+++EN++N+RA+  LF+ E+ +E+EE    GF
Sbjct:    1 YRGHSLALGTGSGEEE------DEDDGWDDLEDGAEEEEEGEGEGDDD-LVEAMQQALWVFEVRSGFLERLVGKEAYRSEMIRRVRKETAGSAPEFLDRYPMYADHLNEVLDGWGEITTEEWKGVDIDNKEDQMVEMLKVRGRAMVYVQSKMATFRPPSVPPVLTERATESREEARAKLAEEEEARLESLSDEEVKRHWEAYEAYVVKRFPQLREEIENMRNNRASEDLFEGEDGEEDEELDFDGF 239
The following BLAST results are available for this feature:
BLAST of NO09G01580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27622.16.600e-8568.70hypothetical protein Naga_100256g8, partial [Nanno... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01580NO09G01580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01580.1NO09G01580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01580.1.cds1NO09G01580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01580.1.cds2NO09G01580.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01580.1 ID=NO09G01580.1|Name=NO09G01580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1974bp
ATGAAATCAAGGTGCCATTTGATAGGGTGCGGCGGATGCTTAGTGCTCCT
GGCGGCGGCGACCGTAATAAGTAGCCCTGCAGTTGCCTTCGTGCATGGCC
CACCAGCGTCGTCAGCGTTGAGAATACTCCAGTGGGCAGGTCAGGGATTG
GAAAGGACAGCAGGAGACGATCTAGACGCCATGGCAATCAGGAGTATCGG
AGGGCGAAAGCGTACTACCACCACCACGGCGGTTTTGTCCTTATGGGGCA
GCCCCCGCGTCAGTAGCAGCAGCAGCAACTACAACGACAGAGCCCCAATA
TCCCAAAGACCAAGAAGTCGCGGCAGCAGCAGCAGCAGCAGTCGTCTTTT
TGCTGGCCTAGTGGGCGGCGCCAGCGGCGGGAGTCTGACCTCCGACGGTC
GAACCAACCAGAACTTCCGCACCCTTACCGCCGACGACTTTGCTGCCAAT
CACCGCGTGGTCGATAACTCAGGGAATCCGGAAAAACGAGCGGAAATCGC
CGCGGCTCTACCAGGTGTAAACCTAGACAAGCTCTGCAAAGAAGTCCCCG
ACGTCATGTTGTGGTCTCCGGCGGAACTAGCAGCAAGAATGGCAGTCCTC
GCCGAGGCCATGCCTGGGGAGGATTTGATTAAGTGTGTGTCACAAGCCCC
CACTATCTTGACTGGTACGCCTTACTTGAAGAAGACCTTGGCCCAATTCG
CCGAATGGTTCCCGGGGAAGACTTTGGCGGAGCTGCTGCCTCGGTGTGCG
GATGCCACGTTAGGGACGGCGCCGAGGAGCTTCGAGTACCCTAAACGGTT
GGGATGGGAGGTGCCATATCTAGACCCCGGGCTCATGGGGAACTACACAG
TGGAAACAGAGCTGGTGCAGGCGATGAAAGAGAGCCAGCATTTGGTGTTT
GGGCTGTGGAAGGAGGATGGGGAGGCGTTGGAGAAGTTTGTGAAGGCGGT
GAGGAGGGCGGTGCTTGCGTTTGAGACGCGGGTTTTTTTCTTGAGGGATC
ATTATCCGCGGGCGCATTTTGAAAGATATTATGCAGACGATCTCTTCGGG
GAATCGGTGGGGTTCGTCGATGAGTGGGCCAAGAAACACCCGGGCTACGA
CAGCTATATGGACGAAAAGCTTGCGGGTTACGAAAATATGGAATTCTTCC
GCTTGAAACGTCTGCCCATCGCTGAGAAGGAGGAAATGCTGATTCAAGCA
CGTGCCGAGGGGATGCTGGGACCCGATGGGGCGTATCGTGGGCGTTCGAT
GGCCTTGCCGGCGGGGGCACGGGGGGAGGAAGGGGCTGAGGAGGGGGCCG
AAGAAGATGATGGGTGGGACGATTTGGAGGATGTGGTGGATGAGACGGAG
GAAGGGGGGGCGGAAGACGACGACGACGAGTTTGTGGAGGCAATGCAGCA
CGCCTTGTGGGTATTTGAGGTGCGAGCAGGGTTTTTGGAACGGTTGGTAG
GACAAGAGGCTTACAGGAATGAGTTAATTCGACGGGTAAGGCAAGAGACC
GCGGGGTCGGCAGAAGAGTTTTTAGAGCGATACCCTGCATACGGGGGCCA
TCTAAGCGAGGTCTTGGATGGATGGGGAGAGATTGAAGCTGAGCTATGGG
AGGGGGTTAATGTGGATGATAAGGAGGATCAGATGGTGGAGATGTTGAAG
GCGAGGGGACGGGCGATGGTGTACGTGCAGAATAAGATGGCTTCGTTCCG
CCCGCCGACAATTCCGCCCGTGATGACTGAGAGGGCGGTGGAGAGTAGGG
TGGAGGCGCGGGCTAAATTGGCGGCGGAGGAGTTGGAGAAGTTGGAGGCG
TTGAGTGATGAGGAGGTGAAGCGGCATTGGGAGGCGTACGAGGCTTATGT
CATGAAGAGGTTTCCATCGGTGAGGAAGGATGTTGAGAATTTGCAGAATA
GTCGGGCAGCCGGGGTTTTGTTTGATGATGAGGAGGATGATGAGGAGGAG
GAATTTGGGTTGGGTGGCTTTTAG
back to top

protein sequence of NO09G01580.1

>NO09G01580.1-protein ID=NO09G01580.1-protein|Name=NO09G01580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=658bp
MKSRCHLIGCGGCLVLLAAATVISSPAVAFVHGPPASSALRILQWAGQGL
ERTAGDDLDAMAIRSIGGRKRTTTTTAVLSLWGSPRVSSSSSNYNDRAPI
SQRPRSRGSSSSSSRLFAGLVGGASGGSLTSDGRTNQNFRTLTADDFAAN
HRVVDNSGNPEKRAEIAAALPGVNLDKLCKEVPDVMLWSPAELAARMAVL
AEAMPGEDLIKCVSQAPTILTGTPYLKKTLAQFAEWFPGKTLAELLPRCA
DATLGTAPRSFEYPKRLGWEVPYLDPGLMGNYTVETELVQAMKESQHLVF
GLWKEDGEALEKFVKAVRRAVLAFETRVFFLRDHYPRAHFERYYADDLFG
ESVGFVDEWAKKHPGYDSYMDEKLAGYENMEFFRLKRLPIAEKEEMLIQA
RAEGMLGPDGAYRGRSMALPAGARGEEGAEEGAEEDDGWDDLEDVVDETE
EGGAEDDDDEFVEAMQHALWVFEVRAGFLERLVGQEAYRNELIRRVRQET
AGSAEEFLERYPAYGGHLSEVLDGWGEIEAELWEGVNVDDKEDQMVEMLK
ARGRAMVYVQNKMASFRPPTIPPVMTERAVESRVEARAKLAAEELEKLEA
LSDEEVKRHWEAYEAYVMKRFPSVRKDVENLQNSRAAGVLFDDEEDDEEE
EFGLGGF*
back to top

mRNA from alignment at chr9:499048..501213+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01580.1 ID=NO09G01580.1|Name=NO09G01580.1|organism=Nannochloropsis oceanica|type=mRNA|length=2166bp|location=Sequence derived from alignment at chr9:499048..501213+ (Nannochloropsis oceanica)
ATGAAATCAAGGTGCCATTTGATAGGGTGCGGCGGATGCTTAGTGCTCCT
GGCGGCGGCGACCGTAATAAGTAGCCCTGCAGTTGCCTTCGTGCATGGCC
CACCAGCGTCGTCAGCGTTGAGAATACTCCAGTGGGCAGGTCAGGGATTG
GAAAGGACAGCAGGAGACGATCTAGACGCCATGGCAATCAGGAGTATCGG
AGGGCGAAAGCGTACTACCACCACCACGGCGGTTTTGTCCTTATGGGGCA
GCCCCCGCGTCAGTAGCAGCAGCAGCAACTACAACGACAGAGCCCCAATA
TCCCAAAGACCAAGAAGTCGCGGCAGCAGCAGCAGCAGCAGTCGTCTTTT
TGCTGGCCTAGTGGGCGGCGCCAGCGGCGGGAGTCTGACCTCCGACGGTC
GAACCAACCAGAACTTCCGCACCCTTACCGCCGACGACTTTGCTGCCAAT
CACCGCGTGGTCGATAACTCAGGGAATCCGGAAAAACGAGCGGAAATCGC
CGCGGCTCTACCAGGTGTAAACCTAGACAAGCTCTGCAAAGAAGTCCCCG
ACGTCATGTTGTGGTCTCCGGCGGAACTAGCAGCAAGAATGGCAGTCCTC
GCCGAGGCCATGCCTGGGGAGGATTTGATTAAGTGTGTGTCACAAGCCCC
CACTATCTTGACTGGTACGCCTTACTTGAAGAAGACCTTGGCCCAATTCG
CCGAATGGTTCCCGGGGAAGACTTTGGCGGAGCTGCTGCCTCGGTGTGCG
GATGCCACGTTAGGGACGGCGCCGAGGAGCTTCGAGTACCCTAAACGGTT
GGGATGGGAGGTGCCATATCTAGACCCCGGGCTCATGGGGAACTACACAG
TGGAAACAGAGCTGGTGCAGGCGATGAAAGAGAGCCAGCATTTGGTGTTT
GGGCTGTGGAAGGAGGATGGGGAGGCGTTGGAGAAGTTTGTGAAGGCGGT
GAGGAGGGCGGTGCTTGCGTTTGAGACGCGGGTTTTTTTCTTGAGGGATC
ATTATCCGCGGGCGCATTTTGAAAGGTACGTGTCAATGGGGCCGAGAAGT
CGTGCGATGGAAATATATGGGTGCTAAGAGGAACGTTGAACTGCAGCGTT
TGGGAGGAGACAAGGACGTGCTATTCGTAGGAAGCGACGACAGACTGTTG
GCGCGTGATAGTTACCTCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCC
CTTTCCTTCTCGTCCAGATATTATGCAGACGATCTCTTCGGGGAATCGGT
GGGGTTCGTCGATGAGTGGGCCAAGAAACACCCGGGCTACGACAGCTATA
TGGACGAAAAGCTTGCGGGTTACGAAAATATGGAATTCTTCCGCTTGAAA
CGTCTGCCCATCGCTGAGAAGGAGGAAATGCTGATTCAAGCACGTGCCGA
GGGGATGCTGGGACCCGATGGGGCGTATCGTGGGCGTTCGATGGCCTTGC
CGGCGGGGGCACGGGGGGAGGAAGGGGCTGAGGAGGGGGCCGAAGAAGAT
GATGGGTGGGACGATTTGGAGGATGTGGTGGATGAGACGGAGGAAGGGGG
GGCGGAAGACGACGACGACGAGTTTGTGGAGGCAATGCAGCACGCCTTGT
GGGTATTTGAGGTGCGAGCAGGGTTTTTGGAACGGTTGGTAGGACAAGAG
GCTTACAGGAATGAGTTAATTCGACGGGTAAGGCAAGAGACCGCGGGGTC
GGCAGAAGAGTTTTTAGAGCGATACCCTGCATACGGGGGCCATCTAAGCG
AGGTCTTGGATGGATGGGGAGAGATTGAAGCTGAGCTATGGGAGGGGGTT
AATGTGGATGATAAGGAGGATCAGATGGTGGAGATGTTGAAGGCGAGGGG
ACGGGCGATGGTGTACGTGCAGAATAAGATGGCTTCGTTCCGCCCGCCGA
CAATTCCGCCCGTGATGACTGAGAGGGCGGTGGAGAGTAGGGTGGAGGCG
CGGGCTAAATTGGCGGCGGAGGAGTTGGAGAAGTTGGAGGCGTTGAGTGA
TGAGGAGGTGAAGCGGCATTGGGAGGCGTACGAGGCTTATGTCATGAAGA
GGTTTCCATCGGTGAGGAAGGATGTTGAGAATTTGCAGAATAGTCGGGCA
GCCGGGGTTTTGTTTGATGATGAGGAGGATGATGAGGAGGAGGAATTTGG
GTTGGGTGGCTTTTAG
back to top

Coding sequence (CDS) from alignment at chr9:499048..501213+

>NO09G01580.1 ID=NO09G01580.1|Name=NO09G01580.1|organism=Nannochloropsis oceanica|type=CDS|length=1974bp|location=Sequence derived from alignment at chr9:499048..501213+ (Nannochloropsis oceanica)
ATGAAATCAAGGTGCCATTTGATAGGGTGCGGCGGATGCTTAGTGCTCCT
GGCGGCGGCGACCGTAATAAGTAGCCCTGCAGTTGCCTTCGTGCATGGCC
CACCAGCGTCGTCAGCGTTGAGAATACTCCAGTGGGCAGGTCAGGGATTG
GAAAGGACAGCAGGAGACGATCTAGACGCCATGGCAATCAGGAGTATCGG
AGGGCGAAAGCGTACTACCACCACCACGGCGGTTTTGTCCTTATGGGGCA
GCCCCCGCGTCAGTAGCAGCAGCAGCAACTACAACGACAGAGCCCCAATA
TCCCAAAGACCAAGAAGTCGCGGCAGCAGCAGCAGCAGCAGTCGTCTTTT
TGCTGGCCTAGTGGGCGGCGCCAGCGGCGGGAGTCTGACCTCCGACGGTC
GAACCAACCAGAACTTCCGCACCCTTACCGCCGACGACTTTGCTGCCAAT
CACCGCGTGGTCGATAACTCAGGGAATCCGGAAAAACGAGCGGAAATCGC
CGCGGCTCTACCAGGTGTAAACCTAGACAAGCTCTGCAAAGAAGTCCCCG
ACGTCATGTTGTGGTCTCCGGCGGAACTAGCAGCAAGAATGGCAGTCCTC
GCCGAGGCCATGCCTGGGGAGGATTTGATTAAGTGTGTGTCACAAGCCCC
CACTATCTTGACTGGTACGCCTTACTTGAAGAAGACCTTGGCCCAATTCG
CCGAATGGTTCCCGGGGAAGACTTTGGCGGAGCTGCTGCCTCGGTGTGCG
GATGCCACGTTAGGGACGGCGCCGAGGAGCTTCGAGTACCCTAAACGGTT
GGGATGGGAGGTGCCATATCTAGACCCCGGGCTCATGGGGAACTACACAG
TGGAAACAGAGCTGGTGCAGGCGATGAAAGAGAGCCAGCATTTGGTGTTT
GGGCTGTGGAAGGAGGATGGGGAGGCGTTGGAGAAGTTTGTGAAGGCGGT
GAGGAGGGCGGTGCTTGCGTTTGAGACGCGGGTTTTTTTCTTGAGGGATC
ATTATCCGCGGGCGCATTTTGAAAGATATTATGCAGACGATCTCTTCGGG
GAATCGGTGGGGTTCGTCGATGAGTGGGCCAAGAAACACCCGGGCTACGA
CAGCTATATGGACGAAAAGCTTGCGGGTTACGAAAATATGGAATTCTTCC
GCTTGAAACGTCTGCCCATCGCTGAGAAGGAGGAAATGCTGATTCAAGCA
CGTGCCGAGGGGATGCTGGGACCCGATGGGGCGTATCGTGGGCGTTCGAT
GGCCTTGCCGGCGGGGGCACGGGGGGAGGAAGGGGCTGAGGAGGGGGCCG
AAGAAGATGATGGGTGGGACGATTTGGAGGATGTGGTGGATGAGACGGAG
GAAGGGGGGGCGGAAGACGACGACGACGAGTTTGTGGAGGCAATGCAGCA
CGCCTTGTGGGTATTTGAGGTGCGAGCAGGGTTTTTGGAACGGTTGGTAG
GACAAGAGGCTTACAGGAATGAGTTAATTCGACGGGTAAGGCAAGAGACC
GCGGGGTCGGCAGAAGAGTTTTTAGAGCGATACCCTGCATACGGGGGCCA
TCTAAGCGAGGTCTTGGATGGATGGGGAGAGATTGAAGCTGAGCTATGGG
AGGGGGTTAATGTGGATGATAAGGAGGATCAGATGGTGGAGATGTTGAAG
GCGAGGGGACGGGCGATGGTGTACGTGCAGAATAAGATGGCTTCGTTCCG
CCCGCCGACAATTCCGCCCGTGATGACTGAGAGGGCGGTGGAGAGTAGGG
TGGAGGCGCGGGCTAAATTGGCGGCGGAGGAGTTGGAGAAGTTGGAGGCG
TTGAGTGATGAGGAGGTGAAGCGGCATTGGGAGGCGTACGAGGCTTATGT
CATGAAGAGGTTTCCATCGGTGAGGAAGGATGTTGAGAATTTGCAGAATA
GTCGGGCAGCCGGGGTTTTGTTTGATGATGAGGAGGATGATGAGGAGGAG
GAATTTGGGTTGGGTGGCTTTTAG
back to top
Synonyms
Publications