NO09G01560, NO09G01560 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO09G01560
Unique Name	NO09G01560
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3889
Alignment location	chr9:492687..496575 -

Link to JBrowse

Properties


Property Name	Value
Description	Dna topoisomerase i

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr9	genome	chr9:492687..496575 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005694	chromosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003917	DNA topoisomerase type I activity
GO:0003824	catalytic activity
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006265	DNA topological change
GO:0016043	cellular component organization
GO:0006259	DNA metabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR011010	DNA_brk_join_enz
IPR036202	TopoI_DNA-bd_euk_N_sf
IPR008336	TopoI_DNA-bd_euk
IPR025834	TopoI_C_dom
IPR013500	TopoI_cat_euk
IPR013499	TopoI_euk
IPR001631	TopoI

Homology

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BLAST of NO09G01560 vs. NCBI_GenBank
Match: XP_008867977.1 (hypothetical protein H310_05117 [Aphanomyces invadans] >ETW03748.1 hypothetical protein H310_05117 [Aphanomyces invadans])

HSP 1 Score: 661.0 bits (1704), Expect = 5.400e-186
Identity = 345/654 (52.75%), Postives = 438/654 (66.97%), Query Frame = 0

Query:  264 LSSKAVRIEQAMKAFKWWDEEALPEGIQWKGLEHNGIFFPPEYVPHGVKMLYEGQEVELPPDLEEVATFFASMPEDGPQLGAPETRKIFVKNFFQQFKEML-KDRLDDDLGVKDFEKCDFTRIRQHLETQKMIKKAATVEEKALQKAEKEERQDHYGYAIVDGRIEKVGNFNMEPPGLFRGRGMHPLMGMIKQRCLPENIIVNMGPGARVPPCPLPGHAWDRVQHDNKVTWLASWKENVLNGVKYVMLSASSSFKGKSDMEKYDKAARLKECIEKIRRDYESNLGKKAERSAKQIATAMFIIDKLALRVGGEKGEDEADTVGCCSLRVEHMKFPPAEEGGGEGGAGKYEIELEFLGKDSMLFKQTIDFASYGEHGKQVFRNLRHFVKEKKPEQDVFETLTPAVLNAHLSSLMPGLSAKVFRTYNASETLQNELPTPEDLAGMSVADKVVAYNEANRKVAILCNHQRTVTKGMEAALGNLQERLALLMEQTKELKQQKEMIKSGKTGKIRTRKDDVMTDKVAKALEKAEALRKKAVTPEEKVKASQALDEAKELKRAAQAWKAKDAHLFARVPTKEQVDRKIEQWREKVTKLEVDIRNKDENKEVALGTSKINYMDPRISVAWCKRVEVPIERVFAKTLRDKFVWAMGVPPGWRF 917
            + +K+ R++ A+KA++WW+ E LPEGIQW+ LEHNG+ FPP Y PHG+ ++Y+G  V L P+ EE+A+FFA+MP DGPQLG P+T  +F KNFF  F+  L K+ +     +KD +KC+F RI+ HL   +  KK  T EEKA +KA+K+E    +G+AIVDG +EKVGNF +EPPGLFRGRG HP  G +K+  +PE + +N+G   RVPPC  PGHAW  V H + V+WLA W ENV+ G+KYV L+ASSSFKGKSDMEKY+KA RLK+CI KIR+DY   L K  +   +Q +TAM++ID LALRVG EKGEDEADTVGCCSLRVEH  F               E+ L FLGKDSM +  TI  A YG  G+QV+ NL+ F  +K+P QD+F  L+   LN HLSSLMPGLSAKVFRT+NAS TL+ EL  P+ L G  VA KVVAYN+ANRKVAILCNHQRTV KG  + +  +   LA L +Q KEL++ +  +K  K   I+ R+DD          +  +A  KKA                               H F +VPT EQVD+KIE W +KV  L++ +++K++NKEVALGTSKINYMDPRI+VAW KR EVPI  VF K LR+KFVW+M V P W F
Sbjct:  109 VQNKSERLDMAIKAYRWWNAEELPEGIQWRSLEHNGVLFPPSYEPHGIPLIYDGVPVTLTPEQEEIASFFAAMPADGPQLGNPKTAAMFTKNFFADFRASLGKNHV-----IKDIKKCNFERIQAHLNEIRDAKKERTKEEKAPEKAKKDEELYRHGFAIVDGHLEKVGNFRIEPPGLFRGRGEHPKTGTLKKAVMPEEVTINVGMEDRVPPCLTPGHAWKEVIHRDTVSWLAYWNENVMGGIKYVWLAASSSFKGKSDMEKYEKARRLKKCIAKIRKDYTEGL-KAKDMFTRQRSTAMWVIDVLALRVGNEKGEDEADTVGCCSLRVEHANF----------NNTNCELTLSFLGKDSMPYNNTIQLAMYGTVGEQVYNNLKSFCAKKEPHQDIFNELSVTELNKHLSSLMPGLSAKVFRTFNASVTLEKEL--PKVLEGDDVAVKVVAYNDANRKVAILCNHQRTVPKGFGSTVDKMSANLAQLKDQLKELEEMRIAVKKNKPKSIQLRQDD----------DGDDADEKKA-----------------------------QLHRFVKVPTVEQVDKKIESWSKKVKALDLRLKDKNDNKEVALGTSKINYMDPRITVAWAKRNEVPISAVFPKALREKFVWSMDVDPNWAF 705

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BLAST of NO09G01560 vs. NCBI_GenBank
Match: XP_002907155.1 (DNA topoisomerase, putative [Phytophthora infestans T30-4] >EEY63719.1 DNA topoisomerase, putative [Phytophthora infestans T30-4])

HSP 1 Score: 660.6 bits (1703), Expect = 7.100e-186
Identity = 344/652 (52.76%), Postives = 442/652 (67.79%), Query Frame = 0

Query:  270 RIEQAMKAFKWWDEEALPEGIQWKGLEHNGIFFPPEYVPHGVKMLYEGQEVELPPDLEEVATFFASMPEDGPQLGAPETRKIFVKNFFQQFKEMLKDRLDDDLGVKDFEKCDFTRIRQHLETQKMIKKAATVEEKALQKAEKEERQDHYGYAIVDGRIEKVGNFNMEPPGLFRGRGMHPLMGMIKQRCLPENIIVNMGPGARVPPCPLPGHAWDRVQHDNKVTWLASWKENVLNGVKYVMLSASSSFKGKSDMEKYDKAARLKECIEKIRRDYESNLGKKAERSAKQIATAMFIIDKLALRVGGEKGEDEADTVGCCSLRVEHMKFPPAEEGGGEGGAGKYEIELEFLGKDSMLFKQTIDFASYGEHGKQVFRNLRHFVKEKKPEQDVFETLTPAVLNAHLSSLMPGLSAKVFRTYNASETLQNELPTP-----EDLAGMSVADKVVAYNEANRKVAILCNHQRTVTKGMEAALGNLQERLALLMEQTKELKQQKEMIKSGKTGKIRTRKDDVMTDKVAKALEKAEALRKKAVTPEEKVKASQALDEAKELKRAAQAWKAKDAHLFARVPTKEQVDRKIEQWREKVTKLEVDIRNKDENKEVALGTSKINYMDPRISVAWCKRVEVPIERVFAKTLRDKFVWAMGVPPGWRF 917
            R++ A+KAF+WW+ E LPEGIQW+ LEHNG+ FPP Y PH V +LY GQE+EL P  EEVA+F+A++P+DGPQLG P+T KIF KNFF  FK++L  + +    VK F+ CDF+RI  HLE  +  KK  T EEK  +K ++E      G+A VDG +EKVGNF +EPPGLFRGRG HP  G +K+R +PE++ VN+G   RVP C +PGHAW +V H + V+WLA W ENV+ G+KYV  +ASSSFKGKSD+ KY+KA RLK+CI+KIRRDY   L K  +   KQ +TAM++ID LALRVG EKGEDEADTVGCCSLRVEHM F        E  A    + L FLGKDSM +  T++ A YG+ GKQV+ NL+ F  +K   ++VF  L+   LN HLSSLMPGLSAKVFRT+NAS TL+ ELP P     +    + VA KVV YN+ANRKVAILCNHQRT  K  +  L  +  +L  L +Q K+LKQ +++I +GK   ++ +K+   ++K      + +AL KKA                              AHLF R P+ +QV +KIE W++K+  L + +++K +NKEVALGTSK+NYMDPRI+VAWCKR EVPI  VF+KTLR+KFVWAM V P W+F
Sbjct:  116 RLDMAIKAFRWWNAEELPEGIQWRTLEHNGVMFPPPYQPHHVPLLYNGQEIELTPSQEEVASFYAAIPKDGPQLGNPKTAKIFNKNFFTDFKKVLGKQHE----VKTFDGCDFSRIAAHLEKLREEKKNMTKEEKLPEKEKREMELFTNGFAFVDGHLEKVGNFRIEPPGLFRGRGEHPKTGTLKERVMPEDVTVNVGISDRVPICNVPGHAWKQVIHRDTVSWLAYWNENVMGGIKYVFFAASSSFKGKSDLAKYEKARRLKKCIDKIRRDYTKGL-KAKDMFTKQRSTAMWVIDVLALRVGNEKGEDEADTVGCCSLRVEHMSF------NDENCA----VTLSFLGKDSMPYNNTVELAQYGDVGKQVYHNLQKFCTKKGKNEEVFHELSVTELNKHLSSLMPGLSAKVFRTFNASFTLEKELPGPSGQELDPHGKLEVAPKVVLYNDANRKVAILCNHQRTAPKSFDTTLDKMNAQLGQLKDQLKDLKQMQKLIAAGKGSSVKLKKEKPASEK------EEDALAKKA-----------------------------QAHLFQRTPSADQVAKKIESWKKKIKALSLRLQDKTDNKEVALGTSKLNYMDPRITVAWCKRNEVPISAVFSKTLREKFVWAMDVDPDWKF 717

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BLAST of NO09G01560 vs. NCBI_GenBank
Match: OWZ15119.1 (DNA topoisomerase [Phytophthora megakarya])

HSP 1 Score: 650.2 bits (1676), Expect = 9.600e-183
Identity = 343/656 (52.29%), Postives = 439/656 (66.92%), Query Frame = 0

Query:  266 SKAVRIEQAMKAFKWWDEEALPEGIQWKGLEHNGIFFPPEYVPHGVKMLYEGQEVELPPDLEEVATFFASMPEDGPQLGAPETRKIFVKNFFQQFKEMLKDRLDDDLGVKDFEKCDFTRIRQHLETQKMIKKAATVEEKALQKAEKEERQDHYGYAIVDGRIEKVGNFNMEPPGLFRGRGMHPLMGMIKQRCLPENIIVNMGPGARVPPCPLPGHAWDRVQHDNKVTWLASWKENVLNGVKYVMLSASSSFKGKSDMEKYDKAARLKECIEKIRRDYESNLGKKAERSAKQIATAMFIIDKLALRVGGEKGEDEADTVGCCSLRVEHMKFPPAEEGGGEGGAGKYEIELEFLGKDSMLFKQTIDFASYGEHGKQVFRNLRHFVKEKKPEQDVFETLTPAVLNAHLSSLMPGLSAKVFRTYNASETLQNELP--TPEDL---AGMSVADKVVAYNEANRKVAILCNHQRTVTKGMEAALGNLQERLALLMEQTKELKQQKEMIKSGKTGKIRTRKDDVMTDKVAKALEKAEALRKKAVTPEEKVKASQALDEAKELKRAAQAWKAKDAHLFARVPTKEQVDRKIEQWREKVTKLEVDIRNKDENKEVALGTSKINYMDPRISVAWCKRVEVPIERVFAKTLRDKFVWAMGVPPGWRF 917
            SK  R++ A+KAF+WW+ E LPEGIQW+ LEHNG+ FPP Y PH V +LY G+E+EL P  EEVA+F+A++P+DGPQLG P+T KIF KNFF  F+++L  + +    V  F+ CDF+RI  +LE Q+  KK  T EEK  +K ++E      G+A VDG +EKVGNF +EPPGLFRGRG HP  G +K+R +PE++ VN+G   RVP C +PGHAW +V H + V+WLA W ENV+ G+KYV  +ASSSFKGKSD+ KY+KA RLK CI+KIRRDY   L K  +   KQ +TAM++ID LALRVG EKGEDEADTVGCCSLRVEHM F        E  A    + L FLGKDSM +  T++ A YG  GK V+ NL+ F  +K   ++VF  L+   LN HLSSLMPGLSAKVFRT+NAS TL+ ELP  + ++L     M VA KVV YN+ANRKVAILCNHQRT  K  +  L  +  +L  L +Q K+LK  + +I  GK   I+ +K+   +D      +  +AL KKA                              AHLF R P+ +QV +KIE W++K+  L + +++K +NKEVALGTSK+NYMDPRI+VAWCKR EVPI  VF+KTLR+KFVWAM V P W+F
Sbjct:  119 SKGERLDMAIKAFRWWNAEELPEGIQWRTLEHNGVMFPPPYKPHHVPLLYNGKEIELTPSQEEVASFYAAIPKDGPQLGNPKTAKIFNKNFFTDFRKVLGKQHE----VTTFDGCDFSRIATYLEKQREEKKNMTKEEKQPEKEKRELEVFTNGFAFVDGHLEKVGNFRIEPPGLFRGRGEHPKTGTLKERVMPEDVTVNVGISDRVPICNVPGHAWKQVIHRDTVSWLAYWNENVMGGIKYVFFAASSSFKGKSDLAKYEKARRLKNCIDKIRRDYTKGL-KATDMFTKQRSTAMWVIDILALRVGNEKGEDEADTVGCCSLRVEHMSF------NDENCA----LTLSFLGKDSMPYNNTVELAQYGSVGKLVYDNLKKFCAKKGKNEEVFHELSVTELNKHLSSLMPGLSAKVFRTFNASFTLEKELPGLSGQELDPQGKMEVAPKVVLYNDANRKVAILCNHQRTAPKSFDTTLDKMNAQLDQLKDQVKDLKHMQTLISKGKVSSIKLKKEKPASDN-----KDEDALAKKA-----------------------------QAHLFQRTPSADQVAKKIENWKKKIKALSLRVQDKTDNKEVALGTSKLNYMDPRITVAWCKRNEVPISAVFSKTLREKFVWAMDVDPDWKF 725

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BLAST of NO09G01560 vs. NCBI_GenBank
Match: XP_024578832.1 (dna topoisomerase [Plasmopara halstedii] >CEG42463.1 dna topoisomerase [Plasmopara halstedii])

HSP 1 Score: 644.8 bits (1662), Expect = 4.000e-181
Identity = 340/656 (51.83%), Postives = 432/656 (65.85%), Query Frame = 0

Query:  266 SKAVRIEQAMKAFKWWDEEALPEGIQWKGLEHNGIFFPPEYVPHGVKMLYEGQEVELPPDLEEVATFFASMPEDGPQLGAPETRKIFVKNFFQQFKEMLKDRLDDDLGVKDFEKCDFTRIRQHLETQKMIKKAATVEEKALQKAEKEERQDHYGYAIVDGRIEKVGNFNMEPPGLFRGRGMHPLMGMIKQRCLPENIIVNMGPGARVPPCPLPGHAWDRVQHDNKVTWLASWKENVLNGVKYVMLSASSSFKGKSDMEKYDKAARLKECIEKIRRDYESNLGKKAERSAKQIATAMFIIDKLALRVGGEKGEDEADTVGCCSLRVEHMKFPPAEEGGGEGGAGKYEIELEFLGKDSMLFKQTIDFASYGEHGKQVFRNLRHFVKEKKPEQDVFETLTPAVLNAHLSSLMPGLSAKVFRTYNASETLQNELPTPE----DLAGM-SVADKVVAYNEANRKVAILCNHQRTVTKGMEAALGNLQERLALLMEQTKELKQQKEMIKSGKTGKIRTRKDDVMTDKVAKALEKAEALRKKAVTPEEKVKASQALDEAKELKRAAQAWKAKDAHLFARVPTKEQVDRKIEQWREKVTKLEVDIRNKDENKEVALGTSKINYMDPRISVAWCKRVEVPIERVFAKTLRDKFVWAMGVPPGWRF 917
            SKA R++ A+KAF+WW+ E LPEGIQW+ LEHNG+ FPP Y PH V +LY G+E+EL P  EEVA+F+A++P+DGPQLG P+T KIF KNFF  FK++L  + +    VK F++CDF+RI  HLE  +  KK  T EEK  +K ++E      G+A VDG +EKVGNF +EPPGLFRGRG HP  G +K+R LPE++ VN+G   R P C +PGHAW +V H + V+WLA W ENV+ G+KYV  +ASSSFKGKSD+ KY+KA +LK CI KIRRDY   L K  +   KQ +TAM++ID LALRVG EKGEDEADTVGCCSLRVEHM F                + L FLGKDSM +  T++ A YG+ G+QV++NL+ F  +K   ++VF  L+   LN HLSSLMPGLSAKVFRT+NAS TL+ ELP P     D  GM  VA KVV YN+ANRKVAILCNHQRT  K  +  L  +                 + +I  GK+  I+ +K+    DK      + +AL KKA                              AHLF R+P+ +QV +KIE W++K+  L + +++K +NKEVALGTSK+NYMDPRI+VAWCKR EVPI  VF+KTLR+KFVWAM V P W+F
Sbjct:  129 SKAERLDMAIKAFRWWNAEELPEGIQWRTLEHNGVMFPPPYKPHHVPLLYNGKEIELTPSQEEVASFYAAIPKDGPQLGNPKTAKIFNKNFFLDFKKVLGKQHE----VKKFDECDFSRIATHLEKMRDEKKNMTKEEKLPEKEKREMEVFSNGFAFVDGHLEKVGNFRIEPPGLFRGRGEHPKTGTLKERVLPEDVTVNVGISDRAPICNVPGHAWKQVIHRDTVSWLAYWNENVMGGIKYVFFAASSSFKGKSDLAKYEKARQLKNCISKIRRDYTKGL-KAKDMFTKQRSTAMWVIDILALRVGNEKGEDEADTVGCCSLRVEHMSFKDE----------NCALTLSFLGKDSMPYNNTVELAQYGDVGRQVYKNLQQFCVKKGKNEEVFHELSVTELNKHLSSLMPGLSAKVFRTFNASFTLEKELPGPSGQELDPQGMLEVAPKVVLYNDANRKVAILCNHQRTAPKSFDTTLDKMNAXXXXXXXXXXXXXXMQTLILKGKSSCIKLKKEKPAPDK------EEDALAKKA-----------------------------QAHLFQRMPSADQVAKKIESWKKKIKALSLRLQDKTDNKEVALGTSKLNYMDPRITVAWCKRNEVPISSVFSKTLREKFVWAMDVAPDWKF 734

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BLAST of NO09G01560 vs. NCBI_GenBank
Match: XP_009517455.1 (hypothetical protein PHYSODRAFT_358817 [Phytophthora sojae] >EGZ30180.1 hypothetical protein PHYSODRAFT_358817 [Phytophthora sojae])

HSP 1 Score: 641.3 bits (1653), Expect = 4.500e-180
Identity = 339/656 (51.68%), Postives = 432/656 (65.85%), Query Frame = 0

Query:  266 SKAVRIEQAMKAFKWWDEEALPEGIQWKGLEHNGIFFPPEYVPHGVKMLYEGQEVELPPDLEEVATFFASMPEDGPQLGAPETRKIFVKNFFQQFKEMLKDRLDDDLGVKDFEKCDFTRIRQHLETQKMIKKAATVEEKALQKAEKEERQDHYGYAIVDGRIEKVGNFNMEPPGLFRGRGMHPLMGMIKQRCLPENIIVNMGPGARVPPCPLPGHAWDRVQHDNKVTWLASWKENVLNGVKYVMLSASSSFKGKSDMEKYDKAARLKECIEKIRRDYESNLGKKAERSAKQIATAMFIIDKLALRVGGEKGEDEADTVGCCSLRVEHMKFPPAEEGGGEGGAGKYEIELEFLGKDSMLFKQTIDFASYGEHGKQVFRNLRHFVKEKKPEQDVFETLTPAVLNAHLSSLMPGLSAKVFRTYNASETLQNELPTP-----EDLAGMSVADKVVAYNEANRKVAILCNHQRTVTKGMEAALGNLQERLALLMEQTKELKQQKEMIKSGKTGKIRTRKDDVMTDKVAKALEKAEALRKKAVTPEEKVKASQALDEAKELKRAAQAWKAKDAHLFARVPTKEQVDRKIEQWREKVTKLEVDIRNKDENKEVALGTSKINYMDPRISVAWCKRVEVPIERVFAKTLRDKFVWAMGVPPGWRF 917
            SKA R++ A+KA++WW+ E LPEGIQW+ LEHNG+ FPP Y PH V ++Y G+++EL P  EE+A+F+A++P+DGPQLG P+T KIF KNFF  FK++L  + +    VK+FE CDF++I  +LE  +  KK+ T EEK  +K ++E      G+A VDG +EKVGNF +EPPGLFRGRG HP  G +K+R +PE++ VN+G   RVP C +PGHAW +V H + V+WLA W ENV+ G+KYV  +ASSSFKGKSD+ KY+KA RLK CI+KIRRDY   L  K +   KQ +TAM++ID LALRVG EKGEDEADTVGCCSLRVEHM F        E  A    + L FLGKDSM +  T++ A YG+ GK V++NL+ F  +K   + VF  L+   LN HLSSLMPGLSAKVFRT+NAS TL+ ELP P     +    M VA KVV YN+ANRKVAILCNHQRT  K  +  L  +  +L  L +Q K+LKQ + +I     GK                     AL KKA                              AHLF R P+ +QV +KIE W++K+  L + +++K +NKEVALGTSK+NYMDPRI+VAWCKR EVPI  VF+KTLR+KFVWAM V P W F
Sbjct:  143 SKAERLDMAIKAYRWWNAEELPEGIQWRTLEHNGVMFPPPYKPHNVPLVYNGKDIELTPSQEEIASFYAAIPKDGPQLGNPKTAKIFNKNFFTDFKKVLGKQHE----VKNFESCDFSKIATYLEKLREEKKSMTKEEKQPEKEKREMEVFTNGFAFVDGHLEKVGNFRIEPPGLFRGRGEHPKTGTLKERVMPEDVTVNVGISDRVPICNVPGHAWKQVIHRDTVSWLAYWNENVMGGIKYVFFAASSSFKGKSDLAKYEKARRLKNCIDKIRRDYTKGLRAK-DMFTKQRSTAMWVIDVLALRVGNEKGEDEADTVGCCSLRVEHMSF------NDENCA----LTLSFLGKDSMPYNNTVELAQYGDVGKLVYQNLQKFCAKKDKNEKVFHELSVTELNKHLSSLMPGLSAKVFRTFNASFTLEKELPGPSGNELDPQGKMEVAPKVVLYNDANRKVAILCNHQRTAPKSFDTTLDKMNAQLDQLKDQLKDLKQMQTLIAK---GKXXXXXXXXXXXXXXXXXXXXXALAKKA-----------------------------QAHLFQRTPSVDQVAKKIENWKKKIKALSLRLQDKTDNKEVALGTSKLNYMDPRITVAWCKRNEVPISAVFSKTLREKFVWAMDVDPDWEF 751

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BLAST of NO09G01560 vs. NCBI_GenBank
Match: XP_009837864.1 (hypothetical protein H257_12385 [Aphanomyces astaci] >ETV72636.1 hypothetical protein H257_12385 [Aphanomyces astaci])

HSP 1 Score: 637.1 bits (1642), Expect = 8.400e-179
Identity = 334/654 (51.07%), Postives = 425/654 (64.98%), Query Frame = 0

Query:  264 LSSKAVRIEQAMKAFKWWDEEALPEGIQWKGLEHNGIFFPPEYVPHGVKMLYEGQEVELPPDLEEVATFFASMPEDGPQLGAPETRKIFVKNFFQQFKEML-KDRLDDDLGVKDFEKCDFTRIRQHLETQKMIKKAATVEEKALQKAEKEERQDHYGYAIVDGRIEKVGNFNMEPPGLFRGRGMHPLMGMIKQRCLPENIIVNMGPGARVPPCPLPGHAWDRVQHDNKVTWLASWKENVLNGVKYVMLSASSSFKGKSDMEKYDKAARLKECIEKIRRDYESNLGKKAERSAKQIATAMFIIDKLALRVGGEKGEDEADTVGCCSLRVEHMKFPPAEEGGGEGGAGKYEIELEFLGKDSMLFKQTIDFASYGEHGKQVFRNLRHFVKEKKPEQDVFETLTPAVLNAHLSSLMPGLSAKVFRTYNASETLQNELPTPEDLAGMSVADKVVAYNEANRKVAILCNHQRTVTKGMEAALGNLQERLALLMEQTKELKQQKEMIKSGKTGKIRTRKDDVMTDKVAKALEKAEALRKKAVTPEEKVKASQALDEAKELKRAAQAWKAKDAHLFARVPTKEQVDRKIEQWREKVTKLEVDIRNKDENKEVALGTSKINYMDPRISVAWCKRVEVPIERVFAKTLRDKFVWAMGVPPGWRF 917
            + SK+ R++ A+KA++WW+ E LPEGIQW+ LEHNG+ FPP Y PHG+ +LY+G  V L P+ EE+A+FFA+MP DGPQLG P+T  +F KNFF  FK  L K+ +     +KD +KC+F +I+ HL   + +KK  T EEKA +K +K+E    +G+AI+DG +EKVGNF +EPPGLFRGRG HP  G +K+  LPE + +N+G   RVPPC  PGHAW  V H + V+WLA W ENV+ G+KYV L+ASSSFKGK+DMEKY+KA RLK CI KIR+DY   L  K +   +Q +TAM++ID LALRVG EKGEDEADTVGCCSLRVEH  F           A   E+ L FLGKDSM +  TI  A YG  G+QVF NL+ F  +K+P QD+F  L+   LN HLSSLMPGLSAKVFRT+NAS TL+ EL  P  L G  VA K+V+YN+ANRKVAILCNHQR+V KG  + +  +   L+ L +Q  EL+  +  +K  K   I+ R+D                   K                                     VPT EQVD+KI+ W +KV  L++ +++K++NKEVALGTSKINYMDPRI+VAW KR EVPI  VF K LR+KFVW+M V   W F
Sbjct:  105 VQSKSERLDMAIKAYRWWNAEELPEGIQWRSLEHNGVLFPPSYEPHGIPVLYDGVPVTLTPEQEEIASFFAAMPADGPQLGNPKTAAMFTKNFFADFKASLGKNHV-----IKDIKKCNFEKIQAHLADLRDVKKDRTKEEKAPEKIKKDEELYRHGFAIIDGHLEKVGNFRIEPPGLFRGRGEHPKTGTLKKAVLPEEVTINVGMEDRVPPCLTPGHAWKEVIHRDTVSWLAYWNENVMGGIKYVWLAASSSFKGKADMEKYEKARRLKNCIAKIRKDYTDGLTAK-DMFTRQRSTAMWVIDVLALRVGNEKGEDEADTVGCCSLRVEHASF----------SATNCELTLSFLGKDSMPYNNTIQLAVYGTVGEQVFNNLKSFCAKKEPHQDIFHELSVTELNKHLSSLMPGLSAKVFRTFNASVTLEKEL--PRVLPGDDVAVKIVSYNDANRKVAILCNHQRSVPKGFGSTVDKMNATLSQLNDQLNELQAMRVAVKKNKPKAIQLRQDXXXXXXXXXXXXXXXXXXTK-------------------------------------VPTVEQVDKKIDSWMKKVKALDLRLKDKNDNKEVALGTSKINYMDPRITVAWAKRNEVPISAVFPKALREKFVWSMDVDSNWSF 703

[Close]

BLAST of NO09G01560 vs. NCBI_GenBank
Match: XP_002185844.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >ACI65314.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 634.8 bits (1636), Expect = 4.200e-178
Identity = 338/652 (51.84%), Postives = 431/652 (66.10%), Query Frame = 0

Query:  275 MKAFKWWDEEALPEGIQWKGLEHNGIFFPPEYVPHGVKMLYEGQEVELPPDLEEVATFFASMPEDGPQLGAPETRKIFVKNFFQQFKEMLKDRLDDDLGVKDFEKCDFTRIRQHLETQKMIKKAATVEEKALQKAEKEERQDHYGYAIVDGRIEKVGNFNMEPPGLFRGRGMHPLMGMIKQRCLPENIIVNMGPGARVPPCPLPGHAWDRVQHDNKVTWLASWKENVLNGVKYVMLSASSSFKGKSDMEKYDKAARLKECIEKIRRDYESNLGKKAERSAKQIATAMFIIDKLALRVGGEKGED-EADTVGCCSLRVEHMKFPPAEEGGGEGGAGKYEIELEFLGKDSMLFKQTIDFAS--YGEH---GKQVFRNLRHFVKEKKPEQDVFETLTPAVLNAHLSSLMPGLSAKVFRTYNASETLQNELPTPE---DLAGMSVADKVVAYNEANRKVAILCNHQRTVTKGMEAALGNLQERLALLMEQTKELKQQKEMIKSGKTGKIRTRKD-DVMTDKVAKALEKAEALRKKAVTPEEKVKASQALDEAKELKRAAQAWKAKDAHLFARVPTKEQVDRKIEQWREKVTKLEVDIRNKDENKEVALGTSKINYMDPRISVAWCKRVEVPIERVFAKTLRDKFVWAMGVPPGWRF 917
            M++F WW+   LPEG QW+ +EH+G+ FP  Y PHGVKM+Y+GQ VEL P  EE ATFFA+M  +G  LG P+T KIF+KNFF  F+E+L  +      VK+F+KCDF  IR+HL  QK+I+KA T EE+   K ++ +    +G++IVDG IE+VGNFNMEPPG FRGRG HP MG +K R LPE + +N+   A VPPCP+PGHAW  V+HD +  WLA+WKEN+ N  KY+ L+A SSFKGKSD  KY KA  L + IEKIR+ Y+ +L K  +   KQ+ATA ++ID+LALRVGGEK  D EADTVGCCSLRVEH+ F P     GEGG  K EIELEFLGKDSMLFKQTIDF +  Y +    G QV+ NL+ F K+KK  ++VF  + P +LN HL   M GLSAKVFRTYNAS+TLQ EL   E       ++ ++KVV YN ANR+VAILCNHQR+V+K  E  L N+  ++ +L +Q K+LK+  +++ +G+  KI T+K    MTD                                                        EQV +KIE W  K++K+E+D+++KD+NKEV+LGTSKINYMDPRISVAWCKR EVPIE++F+KTLRDKF WAM V P W F
Sbjct:    1 MQSFLWWNAPELPEGCQWRTMEHSGVSFPETYEPHGVKMMYDGQPVELTPIQEEAATFFAAMDPEGMHLGNPKTGKIFIKNFFADFREILGKKHI----VKEFKKCDFEPIRKHLNEQKIIRKAITDEERKANKEDRSQTLHQFGFSIVDGHIERVGNFNMEPPGAFRGRGEHPKMGKLKSRVLPEQVSLNLSECAPVPPCPVPGHAWSDVRHDPRGQWLATWKENINNQSKYMQLAAQSSFKGKSDRSKYSKAGLLCKNIEKIRKSYKKDL-KSKDMEVKQLATATWVIDRLALRVGGEKDTDEEADTVGCCSLRVEHLHFDP----NGEGGDSK-EIELEFLGKDSMLFKQTIDFGATLYNDSNGLGAQVYDNLKSFCKKKKSSEEVFHVINPTMLNNHLKQFMDGLSAKVFRTYNASKTLQTELRKYEVSPAWRNLTASEKVVEYNNANREVAILCNHQRSVSKAQETQLENITAKVGMLKKQKKDLKKILKLLTAGEADKIPTKKSPQTMTD--------------------------------------------------------EQVVKKIEAWNGKISKMEMDLKHKDDNKEVSLGTSKINYMDPRISVAWCKRNEVPIEKIFSKTLRDKFNWAMAVVPDWEF 586

[Close]

BLAST of NO09G01560 vs. NCBI_GenBank
Match: GAX93608.1 (Hypothetical protein PINS_001501 [Pythium insidiosum])

HSP 1 Score: 633.3 bits (1632), Expect = 1.200e-177
Identity = 338/652 (51.84%), Postives = 428/652 (65.64%), Query Frame = 0

Query:  266 SKAVRIEQAMKAFKWWDEEALPEGIQWKGLEHNGIFFPPEYVPHGVKMLYEGQEVELPPDLEEVATFFASMPEDGPQLGAPETRKIFVKNFFQQFKEMLKDRLDDDLGVKDFEKCDFTRIRQHLETQKMIKKAATVEEKALQKAEKEERQDHYGYAIVDGRIEKVGNFNMEPPGLFRGRGMHPLMGMIKQRCLPENIIVNMGPGARVPPCPLPGHAWDRVQHDNKVTWLASWKENVLNGVKYVMLSASSSFKGKSDMEKYDKAARLKECIEKIRRDYESNLGKKAERSAKQIATAMFIIDKLALRVGGEKGEDEADTVGCCSLRVEHMKFPPAEEGGGEGGAGKYEIELEFLGKDSMLFKQTIDFASYGEHGKQVFRNLRHFVKEKKPEQDVFETLTPAVLNAHLSSLMPGLSAKVFRTYNASETLQNELPTPEDLAG-MSVADKVVAYNEANRKVAILCNHQRTVTKGMEAALGNLQERLALLMEQTKELKQQKEMIKSGKTGKIRTRKDDVMTDKVAKALEKAEALRKKAVTPEEKVKASQALDEAKELKRAAQAWKAKDAHLFARVPTKEQVDRKIEQWREKVTKLEVDIRNKDENKEVALGTSKINYMDPRISVAWCKRVEVPIERVFAKTLRDKFVWAMGVPPGWRF 917
            SK  R++ A+KA++WW  E LPEGIQW+ LEHNG+ F P Y PH V +LY G+E++L P  EEVA+F+A+MP+DG QLG P+T KIF KNFF  FK++L    +    +K+FE CDF+RI  HLE Q+  KK  T E+K       E  Q   G+AIVDG +EKVGNF  + PGLFRGRG HP  G +KQR +PE + VN+G   RVP C +PGHAW  V H + V+WLA W ENV+ G+KYV L+ASSSFKGKSD+ KY+KA RLK+ I+KIR+DY+  L K  +   +Q +TAM++ID LALRVG EKGEDEADTVGCCSLRVEH+ F             K E+ L FLGKDSM +  T++   YGE G+QV+ N++ F ++K    +VF  L+   LN HLSSLMPGL+AKVFRTYNAS TLQ ELP   D  G M  A KVV YN+ANRKVAILCNHQRT  K  ++AL  +  +L             +  +  GK   +R +  D + D       + +AL KKA                              AHLF RVP+ EQV++KIE W++KV  LE+ +++K++NKEV+LGTSKINYMDPRI+VAWCKR EVPI  VF+KTLR+KFVWAM V P W+F
Sbjct:  141 SKGERLDMAIKAYRWWKAEELPEGIQWRTLEHNGLIFHPPYEPHHVPLLYNGKEIQLTPAQEEVASFYAAMPKDGHQLGNPKTAKIFNKNFFTDFKKVLGKGHE----IKNFELCDFSRIAAHLEKQREEKKNLTKEQKQPXXXXXEMEQFTNGFAIVDGHLEKVGNFRTDLPGLFRGRGEHPKTGTLKQRVMPEEVTVNVGISDRVPVCGVPGHAWKEVIHRDTVSWLAYWNENVMGGIKYVWLAASSSFKGKSDLAKYEKARRLKKYIDKIRKDYQKGL-KAKDMFVRQRSTAMWVIDVLALRVGNEKGEDEADTVGCCSLRVEHVSFSDT----------KCELTLSFLGKDSMPYNNTVELDQYGEVGRQVYANIKKFCEKKDKNMEVFNELSTTELNKHLSSLMPGLTAKVFRTYNASVTLQQELPKDLDPEGVMDSAPKVVTYNDANRKVAILCNHQRTKPKSFDSALEKMTAQLDQXXXXXXXXXXMRMHLNKGKPKLVRLKTADDVKD-------EDDALAKKA-----------------------------QAHLFQRVPSVEQVEKKIEAWKKKVQVLELKLQDKNDNKEVSLGTSKINYMDPRITVAWCKRNEVPISAVFSKTLREKFVWAMDVDPEWKF 741

[Close]

BLAST of NO09G01560 vs. NCBI_GenBank
Match: CCI41458.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 632.9 bits (1631), Expect = 1.600e-177
Identity = 338/653 (51.76%), Postives = 440/653 (67.38%), Query Frame = 0

Query:  266 SKAVRIEQAMKAFKWWDEEALPEGIQWKGLEHNGIFFPPEYVPHGVKMLYEGQEVELPPDLEEVATFFASMPEDGPQLGAPETRKIFVKNFFQQFKEML-KDRLDDDLGVKDFEKCDFTRIRQHLETQKMIKKAATVEEKALQKAEKEERQDHYGYAIVDGRIEKVGNFNMEPPGLFRGRGMHPLMGMIKQRCLPENIIVNMGPGARVPPCPLPGHAWDRVQHDNKVTWLASWKENVLNGVKYVMLSASSSFKGKSDMEKYDKAARLKECIEKIRRDYESNLGKKAERSAKQIATAMFIIDKLALRVGGEKGEDEADTVGCCSLRVEHMKFPPAEEGGGEGGAGKYEIELEFLGKDSMLFKQTIDFASYGEHGKQVFRNLRHFVKEKKPEQDVFETLTPAVLNAHLSSLMPGLSAKVFRTYNASETLQNELPTPEDLAG-MSVADKVVAYNEANRKVAILCNHQRTVTKGMEAALGNLQERLALLMEQTKELKQQKEMIKSGKTGKIRTRKDDVMTDKVAKALEKAEALRKKAVTPEEKVKASQALDEAKELKRAAQAWKAKDAHLFARVPTKEQVDRKIEQWREKVTKLEVDIRNKDENKEVALGTSKINYMDPRISVAWCKRVEVPIERVFAKTLRDKFVWAMGVPPGWRF 917
            SKA R++ A+KA++WW  E LPEGIQW+ LEHNG+FFPP Y PHGV +LY+G+ ++L P  EE+ +F+A++P DGPQLG P+TRKIF +NFFQ  +++L K+ +     +KDF+ CDF+ IRQHL+  +  KK  T              Q   G+AIVDG +EKVGN+ +EPPGLFRGRG HP  G +K+R LPE + VN+G   RVP C +PGHAW  V H + V+WLA W ENV+ G+KYV L+ASSSFKGKSDM KY+KA +LK+ I++IR++Y S L K  +RS +Q +TAM++ID LALRVG EKGEDEADTVGCCSLRVEHM F               E+ L FLGKDSM +  T+  A YG+ GKQV+ NL+ F  +K     VF+ L  + LN HLSSLMPGL+AKVFRT+NAS TL+ ELP   D  G +    KVVAYN+ANR+VAILCNHQRTV K  +  L  +  +L  L EQ ++LK+ +  I+SGK+  I+ +++      VA                +EK K  Q     K+LK      K   +HLF + P+ EQV ++ + W++KV  L + +++K +NK+VALGTSKINYMDPRI+VAWCKR EVPI  VFAKTLR+KFVWAM   P W+F
Sbjct:  141 SKAERLDMAIKAYRWWKAEELPEGIQWRTLEHNGVFFPPAYAPHGVSLLYKGKPLKLTPAQEEIVSFYAAIPPDGPQLGNPKTRKIFNQNFFQDLQKLLGKNHI-----IKDFDLCDFSLIRQHLDVTREEKKNRTXXXXXXXXXXXXXDQFTNGFAIVDGHLEKVGNYRIEPPGLFRGRGEHPKTGTLKERVLPEEVTVNVGISDRVPVCNMPGHAWKEVIHRDTVSWLAYWNENVMGGIKYVWLAASSSFKGKSDMIKYEKARQLKKHIDRIRKNYTSGL-KAKDRSTQQRSTAMWVIDVLALRVGNEKGEDEADTVGCCSLRVEHMSF----------NDENCELTLAFLGKDSMPYNNTVTLAQYGQVGKQVYSNLKMFCHKKSKMDQVFDELATSDLNKHLSSLMPGLTAKVFRTFNASVTLEKELPYALDPDGKLDTNVKVVAYNDANREVAILCNHQRTVPKSFDNTLEKMTAQLDQLKEQLQDLKKMQTFIQSGKSKSIQLKQN------VANE------------NGDEKEKGDQ-----KDLKDLLA--KKAQSHLFPKTPSLEQVKKRSDAWKKKVNTLAIRLQDKSDNKQVALGTSKINYMDPRITVAWCKRNEVPISAVFAKTLREKFVWAMDATPDWKF 752

[Close]

BLAST of NO09G01560 vs. NCBI_GenBank
Match: CCA22788.1 (DNA topoisomerase putative [Albugo laibachii Nc14])

HSP 1 Score: 630.2 bits (1624), Expect = 1.000e-176
Identity = 335/652 (51.38%), Postives = 434/652 (66.56%), Query Frame = 0

Query:  266 SKAVRIEQAMKAFKWWDEEALPEGIQWKGLEHNGIFFPPEYVPHGVKMLYEGQEVELPPDLEEVATFFASMPEDGPQLGAPETRKIFVKNFFQQFKEMLKDRLDDDLGVKDFEKCDFTRIRQHLETQKMIKKAATVEEKALQKAEKEERQDHYGYAIVDGRIEKVGNFNMEPPGLFRGRGMHPLMGMIKQRCLPENIIVNMGPGARVPPCPLPGHAWDRVQHDNKVTWLASWKENVLNGVKYVMLSASSSFKGKSDMEKYDKAARLKECIEKIRRDYESNLGKKAERSAKQIATAMFIIDKLALRVGGEKGEDEADTVGCCSLRVEHMKFPPAEEGGGEGGAGKYEIELEFLGKDSMLFKQTIDFASYGEHGKQVFRNLRHFVKEKKPEQDVFETLTPAVLNAHLSSLMPGLSAKVFRTYNASETLQNELPTPEDLAG-MSVADKVVAYNEANRKVAILCNHQRTVTKGMEAALGNLQERLALLMEQTKELKQQKEMIKSGKTGKIRTRKDDVMTDKVAKALEKAEALRKKAVTPEEKVKASQALDEAKELKRAAQAWKAKDAHLFARVPTKEQVDRKIEQWREKVTKLEVDIRNKDENKEVALGTSKINYMDPRISVAWCKRVEVPIERVFAKTLRDKFVWAMGVPPGWRF 917
            SKA R++ A+KA++WW  E LPEGIQW+ LEHNG+FFPP Y PHG+ +LY+G+ VEL P  EEV +F+A++P DGPQLG P+TRKIF +NFFQ  +++    L  +  +K F+ CDF+ IRQHL+  +  KK                     G+AIVDG +EKVGN+ +EPPGLFRGRG HP  G +K+R LPE + VN+G   RVP C +PGHAW  V H + V+WLA W ENV+ G+KYV L+ASSSFKGKSDM KY+KA +LK+ I++IR+DY S L K  +RS +Q +TAM++ID LALRVG EKGEDEADTVGCCSLRVEHM F               E+ L FLGKDSM +  T+  A YG+ GKQV+ NL+ F  +K     VF+ L  + LN HLSSLMPGL+AKVFRT+NAS TL+ ELP   D  G +    KVVAYN+ANR+VAILCNHQRTV K  +  L  +  +L  L EQ ++LK+ + +I+SGK+  I+ ++                       T  E     +   + K+L     A KA++ HLF + P+ EQV ++ E W++K+  L + +++K +NK+VALGTSKINYMDPRISVAWCKR EVPI  VFAKTLR+KFVWAM   P W+F
Sbjct:  139 SKAERLDMAIKAYRWWKAEELPEGIQWRTLEHNGVFFPPAYFPHGIPLLYQGKSVELTPAQEEVVSFYAAIPPDGPQLGNPKTRKIFNQNFFQDLQKL----LGKNHTIKKFDLCDFSLIRQHLDVAREEKKNRXXXXXXXXXXXXXXXXFTNGFAIVDGHLEKVGNYRIEPPGLFRGRGEHPKTGTLKERVLPEEVTVNVGISDRVPICNMPGHAWKEVIHRDTVSWLAYWNENVMGGIKYVWLAASSSFKGKSDMIKYEKARQLKKHIDRIRKDYTSGL-KAKDRSTQQRSTAMWVIDVLALRVGNEKGEDEADTVGCCSLRVEHMSF----------NDDNCELTLAFLGKDSMPYNNTVTLAQYGQVGKQVYSNLKLFCHKKSKNDQVFDELATSDLNKHLSSLMPGLTAKVFRTFNASVTLEKELPYALDPDGKLETNVKVVAYNDANREVAILCNHQRTVPKSFDNTLEKMTAQLDQLKEQLQDLKKMQVLIQSGKSMSIQLKQS----------------------TANENGDEKEDQKDLKDL----LAKKAQN-HLFPKTPSLEQVKKRTEAWKKKMNTLAIRLQDKSDNKQVALGTSKINYMDPRISVAWCKRNEVPISAVFAKTLREKFVWAMDAAPDWKF 748

The following BLAST results are available for this feature:

BLAST of NO09G01560 vs. NCBI_GenBank

BLAST of NO09G01560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
XP_008867977.1	5.400e-186	52.75	hypothetical protein H310_05117 [Aphanomyces invad...	[more]
XP_002907155.1	7.100e-186	52.76	DNA topoisomerase, putative [Phytophthora infestan...	[more]
OWZ15119.1	9.600e-183	52.29	DNA topoisomerase [Phytophthora megakarya]	[more]
XP_024578832.1	4.000e-181	51.83	dna topoisomerase [Plasmopara halstedii] >CEG42463...	[more]
XP_009517455.1	4.500e-180	51.68	hypothetical protein PHYSODRAFT_358817 [Phytophtho...	[more]
XP_009837864.1	8.400e-179	51.07	hypothetical protein H257_12385 [Aphanomyces astac...	[more]
XP_002185844.1	4.200e-178	51.84	predicted protein [Phaeodactylum tricornutum CCAP ...	[more]
GAX93608.1	1.200e-177	51.84	Hypothetical protein PINS_001501 [Pythium insidios...	[more]
CCI41458.1	1.600e-177	51.76	unnamed protein product [Albugo candida]	[more]
CCA22788.1	1.000e-176	51.38	DNA topoisomerase putative [Albugo laibachii Nc14]	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL119	nonsL119	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR021	ncniR021	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR127	ngnoR127	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK010650	NSK010650	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO09G01560.1	NO09G01560.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630267	gene_4396	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100059g30	gene2929	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO09G01560.1	NO09G01560.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO09G01560 ID=NO09G01560|Name=NO09G01560|organism=Nannochloropsis oceanica|type=gene|length=3889bp
GGCGAAGAAGCTGGGAGGAGACGCCTATGGACTGCGTATTTGCCCTTGCC
AGCCACTTCCATCGCATGTCCACAGCACTAAATGTCCTTTCTGCAGAGTG
AATTCAATGATACCTGCATTTCATGGTCGAACGGCGATAGGACGTGGCGT
CTTTGCAGGCAAACTGAAGTGCTTTCGTTTGCGAGTCTTCGGTTGTTGAG
CCATCAAGTTTCACTCATGGACGTCTCCCTCCTTCCCTACACACACACCT
GCGAACGACAATATACCCGATAGCATGTCGGACTTGGAGGACGAGATGCC
CCTCGCAGCGTTGTCGGCGCTGAAGAAGGGCTCCCCGCTAAGCAAGAGgt
acgtatttcacgaggatgatgagaggtggggagggtggagaagggaccag
aaagctggcacacaagcacgcactcacaacatacttaatctcgaataaat
caaaggaaatcctgtagagcacactatattgcttggcataggctttcgtc
gcaaactacaagcaaacatcccgcatcccctctcatccacctcttcactt
cacccacttataccacagCACCCCTACCGGCTCCCCACGGGCAGCAGCAG
CAGCAGCAGCAAGCAAAAAGGCGACGTCAGCAGTAGAAACGGCTGCAGCA
AAGATGCAGGACAGCAGTGACGACGAAGACGACAAGCCAATCTCCACTCT
AGCCACCAACAAGCGGAAGCGCGAATCACCAGCCAGCTCGCCTAAGGCAG
CAGCAGCAACAGCTGCGAAGAGAGGTGGAGGGAAAGGGGAGGCGTCTGCG
ACGTCTTCTGCTAAGAAAAAGGTGGCTACCTCGAAGGGAAAAGCCAAGGG
CAAGTCTCCAGCGGGTGCGCCCAAGGGAATAGGGGGAAAGCGAGGGAAGG
TAACTGTGCCTGTTACGAAGAAGCGGAGGAAGGCAGAGAGCAGTGAGGAC
GAGAACGAGGACGAGGATGACGACGAGATTGGTGATGGTGATTTGGAAGA
TAGTAGCGCGGATGAAAAGGAGGAGGACGAGGAAGGGATGGAGGACAGCG
ATGAGGAGGATGAGGAGGATGAGGAGGACAGCGACGACGATGGGAATAAG
GGCAGGAGGAAGAAGGCGGCGCCTAAGAAAAAGGCAGCTGCGACCAAGAA
GAAACCGACCACCGCTGCTGCTGCCAAGAAAAAGAAGGTAGCGACTACGA
AGAAGAGCAGCAGCAGCAGCAGCACTAAAAAGAAAGCTGCCGTGAAGCAG
GAGCCAGGTTCAGTAGCCCCTCCCAAGGCCGCTCTTTCCTCCAAGGCCGT
CCGAATCGAGCAAGCGATGAAGGCGTTCAAATGGTGGGACGAAGAAGCCT
TGCCTGAAGGTATCCAATGGAAAGGCCTTGAGCATAACGGGATCTTCTTC
CCCCCCGAGTACGTCCCCCACGGTGTAAAGATGCTCTATGAGGGCCAAGA
GGTGGAGTTACCGCCCGATCTGGAGGAGGTTGCAACCTTCTTTGCATCCA
TGCCAGAGGATGGGCCTCAACTAGGTGCACCGGAGACGAGGAAAATATTT
GTCAAGAATTTTTTCCAGCAGTTCAAGGAGATGCTCAAGgtacggaggga
gggagggagggagggagggagggagggtctggtgccagtccgttagcgtg
ttattgtacgttcgccagaccacaaacgcacgtcaactcacctttccttc
cctctctttccctccctcctatctgcctgcctttaaagGATCGTTTGGAC
GACGATTTAGGGGTGAAGGACTTCGAGAAGTGTGATTTCACGCGGATCCG
GCAGCATTTGGAGACGCAGAAGATGATCAAGAAAGCCGCCACGGTAGAGG
AGAAGGCGTTGCAGAAGGCCGAAAAGGAGGAGCGTCAGGACCATTACGGC
TATGCCATTGTGGACGGCCGCATTGAGAAGGTGGGAAATTTCAACATGGA
GCCCCCGGGGTTGTTTCGGGGCCGTGGTATGCACCCCCTGATGGGGATGA
TCAAGCAACGGTGCTTGCCTGAGAATATCATCGTGAATATGGGCCCGGGG
GCGCGGGTGCCACCGTGTCCCCTCCCGGGACATGCGTGGGACCGAGTGCA
GCACGACAACAAGGTAACGTGGCTAGCGAGCTGGAAGGAAAACGTTCTGA
ACGGCGTCAAGTACGTCATGCTCTCGGCGTCGTCCTCGTTCAAAGGCAAG
TCGGACATGGAGAAATATGACAAAGCGGCACGGTTGAAAGAGTGCATAGA
GAAGATCCGTCGGGATTACGAATCCAATCTAGGGAAAAAAGCCGAGCGGT
CCGCGAAGCAGATTGCGACCGCCATGTTCATCATCGACAAGCTGGCTCTG
AGGGTGGGGGGGGAGAAGGGAGAGGACGAGGCGGATACGGTAGGGTGTTG
TTCGCTCCGGGTGGAGCACATGAAATTTCCTCCGGCAGAGGAAGGAGGGG
GGGAGGGAGGGGCAGGGAAGTATGAGATCGAGTTGGAGTTCTTGGGGAAA
GATTCGATGTTGTTCAAGCAGACAATTGATTTCGCGAGTTACGGGGAGCA
TGGGAAGCAAGTCTTTCGGAACCTGCGGCATTTCGTGAAGGAGAAGAAGC
CAGAGCAGGACGTGTTTGAAACGCTAACCCCGGCGGTATTAAACGCCCAC
TTAAGCAGCCTTATGCCGGGCTTGTCGGCCAAGGTGTTTAGGACGTACAA
CGCGTCGGAAACCCTCCAGAATGAGTTGCCGACCCCAGAAGACTTGGCCG
GGATGAGCGTCGCGGACAAGGTGGTGGCTTACAACGAGGCGAACCGGAAG
GTGGCCATCCTGTGCAACCACCAACGGACGGTGACCAAGGGGATGGAGGC
GGCCCTGGGGAACCTGCAGGAGAGGCTGGCGTTGCTGATGGAGCAGACGA
AGGAGTTGAAGCAACAGAAGGAGATGATCAAGAGCGGCAAGACGGGTAAA
ATTCGAACGCGGAAAGACGACGTCATGACGGATAAGGTGGCCAAGGCCCT
GGAGAAAGCGGAGGCGTTGAGAAAAAAGGCCGTTACGCCCGAAGAGAAGG
TCAAGGCCTCTCAAGCATTGGACGAGGCCAAGGAATTGAAACGCGCGGCT
CAGGCGTGGAAAGCGAAGGATGCGCATTTGTTTGCCAGGGTGCCTACCAA
GGAGCAGGTGGACAGGAAGATAGAGCAGTGGCGAGAAAAAGTCACTAAGC
TCGAGGTCGATATCCGCAACAAGGACGAGAACAAGGAGGTGGCCCTGGGG
ACGAGTAAAATTAATTACATGGATCCGAGGATTTCAGTAGCGTGGTGTAA
GCGGGTGGAGGTGCCAATCGAGCGTGTGTTTGCCAAGACATTGCGGGATA
AGTTTGTATGGGCCATGGGGGTGCCCCCGGGCTGGAGATTCGAGGGGTCG
AAGAAATAGGGGAGAGAAGGGGAAGGAAGGGGAAAAGGTTGGTTGGGTGT
CTTCAATGGGAGTTGAAGTCTGAGAGAGACATGTGCGCGGAGGTCGATTG
AAATGGCGAGTGAAGAGAAACGCAGACAGAAAGAGGGTCAGAGAGAGGTA
GCTAGAGGGAGAAAACTGATGATGTTTTAGGCATCTACGTGGGAAGTGGT
CTCAGGAGTGATTTTTCCGACGACCACATGCGGCGCAAACAGGAAAAGTG
AGGGAGTAGGTTGCGGAAGGAAGAGGAAGAGGAGGAGGAAGGAGAAGAGA
GGAGGTGGAGGAGGCGGAAGATGAGGAAAGGCTGCGCCCAAAACAAGTAG
GACAGAACAAAAACAATACAGGACAGCGAAAGAATAAGAATATATGACAG
GAAGGTAAAAAAGGAAAGAAAACAAGCCGACTACGGTTGTCCAAATCCCG
ACGCGCTTCCACTTACCGAAAGGAAAAAGCAACGCAGAG

protein sequence of NO09G01560.1

>NO09G01560.1-protein ID=NO09G01560.1-protein|Name=NO09G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=922bp
MSDLEDEMPLAALSALKKGSPLSKSTPTGSPRAAAAAAASKKATSAVETA
AAKMQDSSDDEDDKPISTLATNKRKRESPASSPKAAAATAAKRGGGKGEA
SATSSAKKKVATSKGKAKGKSPAGAPKGIGGKRGKVTVPVTKKRRKAESS
EDENEDEDDDEIGDGDLEDSSADEKEEDEEGMEDSDEEDEEDEEDSDDDG
NKGRRKKAAPKKKAAATKKKPTTAAAAKKKKVATTKKSSSSSSTKKKAAV
KQEPGSVAPPKAALSSKAVRIEQAMKAFKWWDEEALPEGIQWKGLEHNGI
FFPPEYVPHGVKMLYEGQEVELPPDLEEVATFFASMPEDGPQLGAPETRK
IFVKNFFQQFKEMLKDRLDDDLGVKDFEKCDFTRIRQHLETQKMIKKAAT
VEEKALQKAEKEERQDHYGYAIVDGRIEKVGNFNMEPPGLFRGRGMHPLM
GMIKQRCLPENIIVNMGPGARVPPCPLPGHAWDRVQHDNKVTWLASWKEN
VLNGVKYVMLSASSSFKGKSDMEKYDKAARLKECIEKIRRDYESNLGKKA
ERSAKQIATAMFIIDKLALRVGGEKGEDEADTVGCCSLRVEHMKFPPAEE
GGGEGGAGKYEIELEFLGKDSMLFKQTIDFASYGEHGKQVFRNLRHFVKE
KKPEQDVFETLTPAVLNAHLSSLMPGLSAKVFRTYNASETLQNELPTPED
LAGMSVADKVVAYNEANRKVAILCNHQRTVTKGMEAALGNLQERLALLME
QTKELKQQKEMIKSGKTGKIRTRKDDVMTDKVAKALEKAEALRKKAVTPE
EKVKASQALDEAKELKRAAQAWKAKDAHLFARVPTKEQVDRKIEQWREKV
TKLEVDIRNKDENKEVALGTSKINYMDPRISVAWCKRVEVPIERVFAKTL
RDKFVWAMGVPPGWRFEGSKK*

Synonyms

Publications