jgi.p|Nanoce1779_2|630267, gene_4396 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|630267
Unique Namegene_4396
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_10:484607..488187 +

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Properties
Property NameValue
TranscriptId630353
ProteinId630267
Product nameDNA topoisomerase putative
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:484607..488187 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003918DNA topoisomerase type II (ATP-hydrolyzing) activity
GO:0003677DNA binding
GO:0003917DNA topoisomerase type I activity
Vocabulary: Biological Process
TermDefinition
GO:0006268DNA unwinding involved in DNA replication
GO:0006265DNA topological change
Vocabulary: Cellular Component
TermDefinition
GO:0005694chromosome
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL021ncniL021Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01560NO09G01560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630267mRNA_4396-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630267mRNA_4396Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|630267

>mRNA_4396-protein ID=mRNA_4396-protein|Name=jgi.p|Nanoce1779_2|630267|organism=Nannochloropsis oceanica|type=polypeptide|length=869bp
MQDSSDDEDDKPISTLATNKRKRESPASSPKAAAATAAKRGGGKGEASAT
SSAKKKVATSKGKAKGKSPAGAPKGIGGKRGKVTVPVTKKRRKAESSEDE
NEDEDDDEIGDGDLEDSSADEKEEDEEGMEDSDEEDEEDEEDSDDDGNKG
RRKKAAPKKKAAATKKKPTTAAAAKKKKVATTKKSSSSSSTKKKAAVKQE
PGSVAPPKAALSSKAVRIEQAMKAFKWWDEEALPEGIQWKGLEHNGIFFP
PEYVPHGVKMLYEGQEVELPPDLEEVATFFASMPEDGPQLGAPETRKIFV
KNFFQQFKEMLKDRLDDDLGVKDFEKCDFTRIRQHLETQKMIKKAATVEE
KALQKAEKEERQDHYGYAIVDGRIEKVGNFNMEPPGLFRGRGMHPLMGMI
KQRCLPENIIVNMGPGARVPPCPLPGHAWDRVQHDNKVTWLASWKENVLN
GVKYVMLSASSSFKGKSDMEKYDKAARLKECIEKIRRDYESNLGKKAERS
AKQIATAMFIIDKLALRVGGEKGEDEADTVGCCSLRVEHMKFPPAEEGGG
EGGAGKYEIELEFLGKDSMLFKQTIDFASYGEHGKQVFRNLRHFVKEKKP
EQDVFETLTPAVLNAHLSSLMPGLSAKVFRTYNASETLQNELPTPEDLAG
MSVADKVVAYNEANRKVAILCNHQRTVTKGMEAALGNLQERLALLMEQTK
ELKQQKEMIKSGKTGKIRTRKDDVMTDKVAKALEKAEALRKKAVTPEEKV
KASQALDEAKELKRAAQAWKAKDAHLFARVPTKEQVDRKIEQWREKVTKL
EVDIRNKDENKEVALGTSKINYMDPRISVAWCKRVEVPIERVFAKTLRDK
FVWAMGVPPGWRFEGSKK*
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Synonyms
Publications