NO09G01260, NO09G01260 (gene) Nannochloropsis oceanica

Overview
NameNO09G01260
Unique NameNO09G01260
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1270
Alignment locationchr9:407072..408341 -

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Properties
Property NameValue
DescriptionRibonuclease H2 subunit B
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:407072..408341 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0032299ribonuclease H2 complex
Vocabulary: INTERPRO
TermDefinition
IPR019024RNase_H2_suB
Homology
BLAST of NO09G01260 vs. NCBI_GenBank
Match: CBJ32810.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 127.5 bits (319), Expect = 8.400e-26
Identity = 111/320 (34.69%), Postives = 149/320 (46.56%), Query Frame = 0
Query:   48 GSPTQYLLTPSGHFCELQSFRP-SGSKYGSWFIEQKVVSDGLLYVASPMDPKLLLLPVLEKHGAAHFSPLEQILAAEADGLYMPLRTCQRLELHRMCDVNDQLGDDMILYRLNPEKVLTWLVSKVERTKRALVMLESA-------REGQNNGIGMGFAAGFTIQTMDNSSTSVGGTEDNGEKTRAAATAREATREEMRTALELVCDYLTDAWATKLQTHCGFSEEEM---KHAAGSLKRSVWEGEADAEQDTAMELTQGKRLKAVEGVGXXXXXXXXXXXXXXXXRCQKMAAMGPSIAQKKLAKTNLKGVKSISSFFDKR 357
            G  T++++    +  ELQ  RP    +  S+FI+Q V  DG ++ AS +DP  LLLPVL KH A  + PL Q   A A+G    LR  + L+  ++CDVND++G D +L R+N E VL WL +KVER  R    L +                  GFA  F          ++    D       A   +E   E  + ALE VC+YL D WATKL    G     +   +  A   +++VW  E  AE D  +EL+ G       G G              XX     A    S AQ+ LAK N KG+KSISSFF K+
Sbjct:    7 GEATKFMMV-GDNLLELQVARPREPQELASFFIDQAVQQDGAVHAASRVDPLFLLLPVLAKH-ATRWCPLAQ---AMAEGGCGSLRGLRHLDADKLCDVNDRMGPDDLLIRINEESVLAWLTAKVERATRRFTELATGXXXXXXXXXXXXXXXXXGFARDF---------QAIAAPMD-------ARMQKEVEAECKQRALEAVCEYLGDEWATKLAERFGTERGVLFGGRSTATKKRKTVW--EETAETDRNLELSHG------SGGG--------QKAKTEXXXXXTKAKQPLSHAQRSLAKVNKKGMKSISSFFGKK 289          
BLAST of NO09G01260 vs. NCBI_GenBank
Match: PIA27560.1 (hypothetical protein AQUCO_07600017v1 [Aquilegia coerulea])

HSP 1 Score: 95.1 bits (235), Expect = 4.600e-16
Identity = 66/187 (35.29%), Postives = 95/187 (50.80%), Query Frame = 0
Query:    9 TRLLCVPEAVVASKFISTALASSSSMHLGQVLALAHPRGGSPTQYLLTPSGHFCELQSFRPSGSKYGSWFIEQKVVSDGLLYVASPMDPKLLLLPVLE-----KHG-AAHFSPLEQILAAEADGLYMPLRTCQRLELHRMCDVNDQLGDDMILYRLNPEKVLTWLVSKVERTKRALVMLESAREGQN 190
            TRLL  P A        T + + + +  G++L+L HP+ G+PT Y L  +G   EL  F+ S   YGSWF+ + V  DG LY ASP+DP  +LLPV E     K G    F  L++I+       Y  L +     +  +C++  ++G     +RLN  KVL WL  KV + K AL  L+     Q+
Sbjct:   10 TRLLIAPVA-------ETTITTRNEIGEGRLLSLRHPKSGNPTCYFLN-NGSLQELNWFKQS---YGSWFLGEYVCEDGGLYTASPVDPVFILLPVFEEARMKKEGEQGKFRQLDEIMFTNGYPGYQKLLSIAEESMQVVCEIK-EIGSSK-FFRLNDSKVLAWLCHKVHQLKMALPTLDKNYAAQD 183          
BLAST of NO09G01260 vs. NCBI_GenBank
Match: PIA27559.1 (hypothetical protein AQUCO_07600017v1 [Aquilegia coerulea])

HSP 1 Score: 95.1 bits (235), Expect = 4.600e-16
Identity = 66/187 (35.29%), Postives = 95/187 (50.80%), Query Frame = 0
Query:    9 TRLLCVPEAVVASKFISTALASSSSMHLGQVLALAHPRGGSPTQYLLTPSGHFCELQSFRPSGSKYGSWFIEQKVVSDGLLYVASPMDPKLLLLPVLE-----KHG-AAHFSPLEQILAAEADGLYMPLRTCQRLELHRMCDVNDQLGDDMILYRLNPEKVLTWLVSKVERTKRALVMLESAREGQN 190
            TRLL  P A        T + + + +  G++L+L HP+ G+PT Y L  +G   EL  F+ S   YGSWF+ + V  DG LY ASP+DP  +LLPV E     K G    F  L++I+       Y  L +     +  +C++  ++G     +RLN  KVL WL  KV + K AL  L+     Q+
Sbjct:   10 TRLLIAPVA-------ETTITTRNEIGEGRLLSLRHPKSGNPTCYFLN-NGSLQELNWFKQS---YGSWFLGEYVCEDGGLYTASPVDPVFILLPVFEEARMKKEGEQGKFRQLDEIMFTNGYPGYQKLLSIAEESMQVVCEIK-EIGSSK-FFRLNDSKVLAWLCHKVHQLKMALPTLDKNYAAQD 183          
BLAST of NO09G01260 vs. NCBI_GenBank
Match: XP_022798210.1 (ribonuclease H2 subunit B-like [Stylophora pistillata] >PFX33624.1 Ribonuclease H2 subunit B [Stylophora pistillata])

HSP 1 Score: 94.4 bits (233), Expect = 7.900e-16
Identity = 90/317 (28.39%), Postives = 137/317 (43.22%), Query Frame = 0
Query:   40 LALAHPRGGSPTQYLLTPSGH-FCELQSFRPSGSKYGSWFIEQKVVSDGLLYVASPMDPKLLLLPVLEKHGAAHFSPLEQILAAEADGLYMPLRTC-QRLELHRMCDVNDQLGDDMILYRLNPEKVLTWLVSKVERTKRALVMLESAREGQNNGIGMGFAAGFTIQTMDNSSTSVGGTEDNGEKTRAAATAREATREE-MRTALELVCDYLTDAWATKLQTHCGFSEEEMKHAAGSLKRSVWEGEADAEQDTAMELTQGKRLKAVEGVGXXXXXXXXXXXXXXXXRCQKMAAMGPSIAQKKLAKTNLKGVKSISSFF 354
            + + HPR G+  Q+LLT SG    E+  F     +  SWFIE  V  DG L+V +P+DP  L+LP L K+ +  F  L+Q+L  +       L  C    E+  +CDV     DD+ ++RLN +K   WL +KVE+T  +L +                 +G  +     S+T V            +    +ATR + +R A  LV +YL+  W+ +L+   G ++E                     Q ++ E    KR K  + +                       A   + AQK L+K + KG+KSISSFF
Sbjct:   40 IKIPHPRTGNNQQFLLTHSGEKIFEVLKFT---EEPRSWFIEDSVQKDGSLFVITPVDPLFLVLPYLTKY-SQKFRTLDQLLLDDEHPPICRLTGCLSSDEILNICDVKGD--DDLQVFRLNNDKTTAWLKAKVEQTANSLSL-----------------SGVHVSKGSQSATFV-----------RSRRHIDATRSDFVRYAFGLVSEYLSLRWSERLKESLGITDE--------------------AQLSSPEEPPTKRAKVTDEIPEATEDYSKEFSKLNSKTESDKTATKLTAAQKSLSKVDKKGMKSISSFF 302          
BLAST of NO09G01260 vs. NCBI_GenBank
Match: XP_012855440.1 (PREDICTED: ribonuclease H2 subunit B isoform X1 [Erythranthe guttata])

HSP 1 Score: 92.4 bits (228), Expect = 3.000e-15
Identity = 56/155 (36.13%), Postives = 83/155 (53.55%), Query Frame = 0
Query:   35 HLGQVLALAHPRGGSPTQYLLTPSGHFCELQSFRPSGSKYGSWFIEQKVVSDGLLYVASPMDPKLLLLPVLEK------HGAAHFSPLEQILAAEADGLYMPLRTCQRLELHRMCDVNDQLGDDMILYRLNPEKVLTWLVSKVERTKRALVMLES 184
            H GQ L+L HP+ G+ T YL + +G   ELQ F+     +GSWF+   V  DG LY A+P+DP  +LLPV ++      +    F  L++I+  +    Y  L       +  +CD+  ++G     +RLN EKVL WL  KV + KR L  L++
Sbjct:   25 HAGQFLSLQHPKTGNTTSYLYS-NGVLLELQWFKQC---FGSWFLGDYVCEDGRLYTATPIDPVFILLPVFDEARMKKGNEPGKFRQLDEIIYVDGYPGYQTLSQISDKTMEVVCDIT-EIGSTK-FFRLNDEKVLKWLCYKVNQLKRILPTLDN 173          
BLAST of NO09G01260 vs. NCBI_GenBank
Match: XP_012855441.1 (PREDICTED: ribonuclease H2 subunit B isoform X2 [Erythranthe guttata])

HSP 1 Score: 92.4 bits (228), Expect = 3.000e-15
Identity = 56/155 (36.13%), Postives = 83/155 (53.55%), Query Frame = 0
Query:   35 HLGQVLALAHPRGGSPTQYLLTPSGHFCELQSFRPSGSKYGSWFIEQKVVSDGLLYVASPMDPKLLLLPVLEK------HGAAHFSPLEQILAAEADGLYMPLRTCQRLELHRMCDVNDQLGDDMILYRLNPEKVLTWLVSKVERTKRALVMLES 184
            H GQ L+L HP+ G+ T YL + +G   ELQ F+     +GSWF+   V  DG LY A+P+DP  +LLPV ++      +    F  L++I+  +    Y  L       +  +CD+  ++G     +RLN EKVL WL  KV + KR L  L++
Sbjct:   25 HAGQFLSLQHPKTGNTTSYLYS-NGVLLELQWFKQC---FGSWFLGDYVCEDGRLYTATPIDPVFILLPVFDEARMKKGNEPGKFRQLDEIIYVDGYPGYQTLSQISDKTMEVVCDIT-EIGSTK-FFRLNDEKVLKWLCYKVNQLKRILPTLDN 173          
BLAST of NO09G01260 vs. NCBI_GenBank
Match: XP_020554644.1 (ribonuclease H2 subunit B [Sesamum indicum])

HSP 1 Score: 90.1 bits (222), Expect = 1.500e-14
Identity = 56/166 (33.73%), Postives = 83/166 (50.00%), Query Frame = 0
Query:   30 SSSSMHLGQVLALAHPRGGSPTQYLLTPSGHFCELQSFRPSGSKYGSWFIEQKVVSDGLLYVASPMDPKLLLLPVLEK------HGAAHFSPLEQILAAEADGLYMPLRTCQRLELHRMCDVNDQLGDDMILYRLNPEKVLTWLVSKVERTKRALVMLESAREGQN 190
            S+   HLG+ L+L HPR G+ T YL +  G    LQ        YGSWF+   V  DG LY A+P+DP  +LLP+ E+      +    F  L++I+       Y  L +     +  +CD+  ++G     +RLN  KVL WL  KV + K+ L  L++    Q+
Sbjct:   19 STLGKHLGKFLSLRHPRTGNTTCYLYSDGG----LQELHWLNQSYGSWFLGDYVCEDGRLYTATPVDPVFILLPIFEEARMKKGNDPGKFRQLDEIIYIHGYPGYQSLSSIAEKTMQVVCDLK-EVGSTK-FFRLNDLKVLKWLCYKVHQLKQTLPTLDNNYAAQD 178          
BLAST of NO09G01260 vs. NCBI_GenBank
Match: OIT07341.1 (hypothetical protein A4A49_17626 [Nicotiana attenuata])

HSP 1 Score: 89.4 bits (220), Expect = 2.500e-14
Identity = 60/173 (34.68%), Postives = 86/173 (49.71%), Query Frame = 0
Query:   16 EAVVASKFISTALASSSSMHLGQVLALAHPRGGSPTQYLLTPSGHFCELQSFRPSGSKYGSWFIEQKVVSDGLLYVASPMDPKLLLLPVLE------KHGAAHFSPLEQILAAEADGLYMPLRTCQRLELHRMCDVNDQLGDDMILYRLNPEKVLTWLVSKVERTKRALVMLE 183
            E +  ++ +     S     +GQ+L+L HP+ G+ T Y+    G   EL  F+ S   YGSWF+   V  DG LY A+P+DP  +LLP+ E      K     F  L++I        Y  L +     +  +CDV D +G     YRLN EKVL WL  KV + K+ L+ L+
Sbjct:  148 EGINEARVLIAPEPSKDGNKVGQLLSLQHPKSGNATCYICV-DGSLQELHWFKQS---YGSWFLGDYVCEDGRLYTATPVDPVFVLLPIFEEARMKKKDDLGKFRQLDEITYVVGYPGYQNLSSVAENCMQVVCDVKD-IGKTK-FYRLNDEKVLKWLCFKVIQLKKTLLTLD 314          
BLAST of NO09G01260 vs. NCBI_GenBank
Match: XP_019265951.1 (PREDICTED: ribonuclease H2 subunit B [Nicotiana attenuata])

HSP 1 Score: 89.4 bits (220), Expect = 2.500e-14
Identity = 60/173 (34.68%), Postives = 86/173 (49.71%), Query Frame = 0
Query:   16 EAVVASKFISTALASSSSMHLGQVLALAHPRGGSPTQYLLTPSGHFCELQSFRPSGSKYGSWFIEQKVVSDGLLYVASPMDPKLLLLPVLE------KHGAAHFSPLEQILAAEADGLYMPLRTCQRLELHRMCDVNDQLGDDMILYRLNPEKVLTWLVSKVERTKRALVMLE 183
            E +  ++ +     S     +GQ+L+L HP+ G+ T Y+    G   EL  F+ S   YGSWF+   V  DG LY A+P+DP  +LLP+ E      K     F  L++I        Y  L +     +  +CDV D +G     YRLN EKVL WL  KV + K+ L+ L+
Sbjct:   67 EGINEARVLIAPEPSKDGNKVGQLLSLQHPKSGNATCYICV-DGSLQELHWFKQS---YGSWFLGDYVCEDGRLYTATPVDPVFVLLPIFEEARMKKKDDLGKFRQLDEITYVVGYPGYQNLSSVAENCMQVVCDVKD-IGKTK-FYRLNDEKVLKWLCFKVIQLKKTLLTLD 233          
BLAST of NO09G01260 vs. NCBI_GenBank
Match: GAT42652.1 (predicted protein [Mycena chlorophos])

HSP 1 Score: 89.0 bits (219), Expect = 3.300e-14
Identity = 60/167 (35.93%), Postives = 87/167 (52.10%), Query Frame = 0
Query:   28 LASSSSMHLGQVLALAHPRGGSPTQYLLTPSGHFCELQSFRPSGSKYGSWFIEQKVVSDGLLYVASPMDPKLLLLPVLE----KHGAAHFSPLEQILAAEA-----------------DGLYMPLRTCQRLELHRMCDVNDQLGDDMILYRLNPEKVLTWLVSKVER 174
            L  ++ ++  + L L HPR   PT +L T      E+QS  P+ S+  SWFIEQ+VVSDG L V +P+DP  LLLP+L+    ++    F P ++I    A                 D LY     C R  L  +CDV  ++ +D+I+YR + EKV+ +L  KV R
Sbjct:    7 LPDATPLNSTRFLRLLHPRTELPTLFLATDD--ILEVQSVSPANSR--SWFIEQEVVSDGKLLVFTPVDPAFLLLPILQSVYPENATGMFRPADEIFEDAATNLDKPSSDASKSITKEDVLYFTSMQCCRRALRCICDVK-EITEDIIVYRFSREKVVQYLQKKVVR 168          
The following BLAST results are available for this feature:
BLAST of NO09G01260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBJ32810.18.400e-2634.69conserved unknown protein [Ectocarpus siliculosus][more]
PIA27560.14.600e-1635.29hypothetical protein AQUCO_07600017v1 [Aquilegia c... [more]
PIA27559.14.600e-1635.29hypothetical protein AQUCO_07600017v1 [Aquilegia c... [more]
XP_022798210.17.900e-1628.39ribonuclease H2 subunit B-like [Stylophora pistill... [more]
XP_012855440.13.000e-1536.13PREDICTED: ribonuclease H2 subunit B isoform X1 [E... [more]
XP_012855441.13.000e-1536.13PREDICTED: ribonuclease H2 subunit B isoform X2 [E... [more]
XP_020554644.11.500e-1433.73ribonuclease H2 subunit B [Sesamum indicum][more]
OIT07341.12.500e-1434.68hypothetical protein A4A49_17626 [Nicotiana attenu... [more]
XP_019265951.12.500e-1434.68PREDICTED: ribonuclease H2 subunit B [Nicotiana at... [more]
GAT42652.13.300e-1435.93predicted protein [Mycena chlorophos][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G01260.1NO09G01260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670791gene_4429Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G01260.1NO09G01260.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G01260 ID=NO09G01260|Name=NO09G01260|organism=Nannochloropsis oceanica|type=gene|length=1270bp
ATGGCGACGTCTCAAAGCACGCGGACCCGGCTTTTGTGCGTACCCGAGGC
AGTGGTGGCGTCCAAATTCATTTCCACGGCCCTTGCGTCGTCGTCTTCAA
TGCACTTGGGTCAGGTCCTAGCCTTGGCACACCCACGCGGAGGCAGCCCA
ACGCAATACTTGCTGACTCCGTCGGGCCACTTCTGCGAGCTTCAGTCGTT
TCGACCCTCGGGGAGCAAATATGGGAGCTGGTTCATTGAGCAAAAAGTGG
TCTCAGACGGCCTCCTATACGTGGCTTCCCCTATGGACCCCAAACTCCTC
TTGCTGCCCGTCCTGGAAAAGCACGGGGCCGCCCACTTCTCGCCCTTAGA
GCAGATTTTGGCCGCGGAGGCGGACGGGCTTTACATGCCTTTGCGGACAT
GCCAACGCTTGGAGTTGCATAGAATGTGCGATGTGAATGACCAATTAGGC
GACGACATGATTCTCTACCGCCTGAATCCTGAGAAGGTCTTGACATGGCT
TGTCAGCAAGGTGGAACGGACAAAGCGCGCGCTGGTGATGCTTGAATCTG
CAAGAGAAGGGCAGAATAATGGGATTGGCATGGGGTTTGCTGCGGGTTTT
ACCATCCAGACGATGGATAACAGCAGTACGAGTGTGGGGGGCACGGAGGA
CAATGGGGAGAAAACAAGAGCAGCTGCTACAGCACGAGgtacgtcatttg
cgctgacgttcgagaaaaagcctgaaggtgcaaataaatagaccttgcgc
tccaaaatatctctcatctccaatgcccatacttagcccccgtgtctgtc
gtgctgaatcgagaagagacgcaattcaaaaatctagaagtgaccacaaa
ccacttacaccttcccctctctttatctgtatagAGGCTACACGAGAAGA
AATGCGCACCGCTCTCGAGCTTGTCTGCGACTATTTGACAGACGCTTGGG
CAACCAAACTCCAAACCCACTGCGGATTCAGCGAGGAGGAAATGAAACAC
GCAGCCGGCAGCCTAAAACGTTCTGTCTGGGAAGGTGAAGCTGACGCAGA
GCAAGACACGGCCATGGAATTGACGCAGGGAAAGAGGTTGAAGGCTGTAG
AAGGGGTAGGGGGAGGAGCGGTTGCACGTGGTGGTGGTGGTGGAGGAGTA
GGGGGAGGGAGGTGCCAAAAAATGGCTGCGATGGGCCCGAGCATTGCACA
AAAGAAGCTGGCCAAGACGAATTTAAAGGGTGTCAAGTCAATTTCCTCCT
TCTTTGATAAGAGGTCGTGA
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protein sequence of NO09G01260.1

>NO09G01260.1-protein ID=NO09G01260.1-protein|Name=NO09G01260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MATSQSTRTRLLCVPEAVVASKFISTALASSSSMHLGQVLALAHPRGGSP
TQYLLTPSGHFCELQSFRPSGSKYGSWFIEQKVVSDGLLYVASPMDPKLL
LLPVLEKHGAAHFSPLEQILAAEADGLYMPLRTCQRLELHRMCDVNDQLG
DDMILYRLNPEKVLTWLVSKVERTKRALVMLESAREGQNNGIGMGFAAGF
TIQTMDNSSTSVGGTEDNGEKTRAAATAREATREEMRTALELVCDYLTDA
WATKLQTHCGFSEEEMKHAAGSLKRSVWEGEADAEQDTAMELTQGKRLKA
VEGVGGGAVARGGGGGGVGGGRCQKMAAMGPSIAQKKLAKTNLKGVKSIS
SFFDKRS*
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Synonyms
Publications