NO09G01260.1, NO09G01260.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01260.1
Unique NameNO09G01260.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1074
Alignment locationchr9:407072..408341 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:407072..408341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G01260.1 vs.
Match: CBJ32810.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 139.0 bits (349), Expect = 2.800e-29
Identity = 111/313 (35.46%), Postives = 152/313 (48.56%), Query Frame = 0 
Query:   48 GSPTQYLLTPSGHFCELQSFRP-SGSKYGSWFIEQKVVSDGLLYVASPMDPKLLLLPVLEKHGAAHFSPLEQILAAEADGLYMPLRTCQRLELHRMCDVNDQLGDDMILYRLNPEKVLTWLVSKVERTKRALVMLESAREGQNNGIGMGFAAGFTIQTMDNSSTSVGGTEDNGEKTRAAATAREATREEMRTALELVCDYLTDAWATKLQTHCGFSEEEM---KHAAGSLKRSVWEGEADAEQDTAMELTQGKRLKAVEGVGGGAVARGGGGGGVGGGRCQKMAAMGPSIAQKKLAKTNLKGVKSISSFFDKR 357
            G  T++++    +  ELQ  RP    +  S+FI+Q V  DG ++ AS +DP  LLLPVL KH A  + PL Q +A    G    LR  + L+  ++CDVND++G D +L R+N E VL WL +KVER  R    L +    ++   G G AAG      D  + +             A   +E   E  + ALE VC+YL D WATKL    G     +   +  A   +++VW  E  AE D  +EL+ G         GGG  A+               A    S AQ+ LAK N KG+KSISSFF K+
Sbjct:    7 GEATKFMMV-GDNLLELQVARPREPQELASFFIDQAVQQDGAVHAASRVDPLFLLLPVLAKH-ATRWCPLAQAMAEGGCG---SLRGLRHLDADKLCDVNDRMGPDDLLIRINEESVLAWLTAKVERATRRFTELATGGGEESGWAGGGAAAGGAGFARDFQAIAA---------PMDARMQKEVEAECKQRALEAVCEYLGDEWATKLAERFGTERGVLFGGRSTATKKRKTVW--EETAETDRNLELSHGS--------GGGQKAK------TEAAAAATKAKQPLSHAQRSLAKVNKKGMKSISSFFGKK 289
The following BLAST results are available for this feature:
BLAST of NO09G01260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ32810.12.800e-2935.46conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01260NO09G01260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01260.1NO09G01260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01260.1.cds1NO09G01260.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01260.1.cds2NO09G01260.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01260.1 ID=NO09G01260.1|Name=NO09G01260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1074bp
ATGGCGACGTCTCAAAGCACGCGGACCCGGCTTTTGTGCGTACCCGAGGC
AGTGGTGGCGTCCAAATTCATTTCCACGGCCCTTGCGTCGTCGTCTTCAA
TGCACTTGGGTCAGGTCCTAGCCTTGGCACACCCACGCGGAGGCAGCCCA
ACGCAATACTTGCTGACTCCGTCGGGCCACTTCTGCGAGCTTCAGTCGTT
TCGACCCTCGGGGAGCAAATATGGGAGCTGGTTCATTGAGCAAAAAGTGG
TCTCAGACGGCCTCCTATACGTGGCTTCCCCTATGGACCCCAAACTCCTC
TTGCTGCCCGTCCTGGAAAAGCACGGGGCCGCCCACTTCTCGCCCTTAGA
GCAGATTTTGGCCGCGGAGGCGGACGGGCTTTACATGCCTTTGCGGACAT
GCCAACGCTTGGAGTTGCATAGAATGTGCGATGTGAATGACCAATTAGGC
GACGACATGATTCTCTACCGCCTGAATCCTGAGAAGGTCTTGACATGGCT
TGTCAGCAAGGTGGAACGGACAAAGCGCGCGCTGGTGATGCTTGAATCTG
CAAGAGAAGGGCAGAATAATGGGATTGGCATGGGGTTTGCTGCGGGTTTT
ACCATCCAGACGATGGATAACAGCAGTACGAGTGTGGGGGGCACGGAGGA
CAATGGGGAGAAAACAAGAGCAGCTGCTACAGCACGAGAGGCTACACGAG
AAGAAATGCGCACCGCTCTCGAGCTTGTCTGCGACTATTTGACAGACGCT
TGGGCAACCAAACTCCAAACCCACTGCGGATTCAGCGAGGAGGAAATGAA
ACACGCAGCCGGCAGCCTAAAACGTTCTGTCTGGGAAGGTGAAGCTGACG
CAGAGCAAGACACGGCCATGGAATTGACGCAGGGAAAGAGGTTGAAGGCT
GTAGAAGGGGTAGGGGGAGGAGCGGTTGCACGTGGTGGTGGTGGTGGAGG
AGTAGGGGGAGGGAGGTGCCAAAAAATGGCTGCGATGGGCCCGAGCATTG
CACAAAAGAAGCTGGCCAAGACGAATTTAAAGGGTGTCAAGTCAATTTCC
TCCTTCTTTGATAAGAGGTCGTGA
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protein sequence of NO09G01260.1

>NO09G01260.1-protein ID=NO09G01260.1-protein|Name=NO09G01260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MATSQSTRTRLLCVPEAVVASKFISTALASSSSMHLGQVLALAHPRGGSP
TQYLLTPSGHFCELQSFRPSGSKYGSWFIEQKVVSDGLLYVASPMDPKLL
LLPVLEKHGAAHFSPLEQILAAEADGLYMPLRTCQRLELHRMCDVNDQLG
DDMILYRLNPEKVLTWLVSKVERTKRALVMLESAREGQNNGIGMGFAAGF
TIQTMDNSSTSVGGTEDNGEKTRAAATAREATREEMRTALELVCDYLTDA
WATKLQTHCGFSEEEMKHAAGSLKRSVWEGEADAEQDTAMELTQGKRLKA
VEGVGGGAVARGGGGGGVGGGRCQKMAAMGPSIAQKKLAKTNLKGVKSIS
SFFDKRS*
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mRNA from alignment at chr9:407072..408341-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01260.1 ID=NO09G01260.1|Name=NO09G01260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1270bp|location=Sequence derived from alignment at chr9:407072..408341- (Nannochloropsis oceanica)
ATGGCGACGTCTCAAAGCACGCGGACCCGGCTTTTGTGCGTACCCGAGGC
AGTGGTGGCGTCCAAATTCATTTCCACGGCCCTTGCGTCGTCGTCTTCAA
TGCACTTGGGTCAGGTCCTAGCCTTGGCACACCCACGCGGAGGCAGCCCA
ACGCAATACTTGCTGACTCCGTCGGGCCACTTCTGCGAGCTTCAGTCGTT
TCGACCCTCGGGGAGCAAATATGGGAGCTGGTTCATTGAGCAAAAAGTGG
TCTCAGACGGCCTCCTATACGTGGCTTCCCCTATGGACCCCAAACTCCTC
TTGCTGCCCGTCCTGGAAAAGCACGGGGCCGCCCACTTCTCGCCCTTAGA
GCAGATTTTGGCCGCGGAGGCGGACGGGCTTTACATGCCTTTGCGGACAT
GCCAACGCTTGGAGTTGCATAGAATGTGCGATGTGAATGACCAATTAGGC
GACGACATGATTCTCTACCGCCTGAATCCTGAGAAGGTCTTGACATGGCT
TGTCAGCAAGGTGGAACGGACAAAGCGCGCGCTGGTGATGCTTGAATCTG
CAAGAGAAGGGCAGAATAATGGGATTGGCATGGGGTTTGCTGCGGGTTTT
ACCATCCAGACGATGGATAACAGCAGTACGAGTGTGGGGGGCACGGAGGA
CAATGGGGAGAAAACAAGAGCAGCTGCTACAGCACGAGGTACGTCATTTG
CGCTGACGTTCGAGAAAAAGCCTGAAGGTGCAAATAAATAGACCTTGCGC
TCCAAAATATCTCTCATCTCCAATGCCCATACTTAGCCCCCGTGTCTGTC
GTGCTGAATCGAGAAGAGACGCAATTCAAAAATCTAGAAGTGACCACAAA
CCACTTACACCTTCCCCTCTCTTTATCTGTATAGAGGCTACACGAGAAGA
AATGCGCACCGCTCTCGAGCTTGTCTGCGACTATTTGACAGACGCTTGGG
CAACCAAACTCCAAACCCACTGCGGATTCAGCGAGGAGGAAATGAAACAC
GCAGCCGGCAGCCTAAAACGTTCTGTCTGGGAAGGTGAAGCTGACGCAGA
GCAAGACACGGCCATGGAATTGACGCAGGGAAAGAGGTTGAAGGCTGTAG
AAGGGGTAGGGGGAGGAGCGGTTGCACGTGGTGGTGGTGGTGGAGGAGTA
GGGGGAGGGAGGTGCCAAAAAATGGCTGCGATGGGCCCGAGCATTGCACA
AAAGAAGCTGGCCAAGACGAATTTAAAGGGTGTCAAGTCAATTTCCTCCT
TCTTTGATAAGAGGTCGTGA
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Coding sequence (CDS) from alignment at chr9:407072..408341-

>NO09G01260.1 ID=NO09G01260.1|Name=NO09G01260.1|organism=Nannochloropsis oceanica|type=CDS|length=1074bp|location=Sequence derived from alignment at chr9:407072..408341- (Nannochloropsis oceanica)
ATGGCGACGTCTCAAAGCACGCGGACCCGGCTTTTGTGCGTACCCGAGGC
AGTGGTGGCGTCCAAATTCATTTCCACGGCCCTTGCGTCGTCGTCTTCAA
TGCACTTGGGTCAGGTCCTAGCCTTGGCACACCCACGCGGAGGCAGCCCA
ACGCAATACTTGCTGACTCCGTCGGGCCACTTCTGCGAGCTTCAGTCGTT
TCGACCCTCGGGGAGCAAATATGGGAGCTGGTTCATTGAGCAAAAAGTGG
TCTCAGACGGCCTCCTATACGTGGCTTCCCCTATGGACCCCAAACTCCTC
TTGCTGCCCGTCCTGGAAAAGCACGGGGCCGCCCACTTCTCGCCCTTAGA
GCAGATTTTGGCCGCGGAGGCGGACGGGCTTTACATGCCTTTGCGGACAT
GCCAACGCTTGGAGTTGCATAGAATGTGCGATGTGAATGACCAATTAGGC
GACGACATGATTCTCTACCGCCTGAATCCTGAGAAGGTCTTGACATGGCT
TGTCAGCAAGGTGGAACGGACAAAGCGCGCGCTGGTGATGCTTGAATCTG
CAAGAGAAGGGCAGAATAATGGGATTGGCATGGGGTTTGCTGCGGGTTTT
ACCATCCAGACGATGGATAACAGCAGTACGAGTGTGGGGGGCACGGAGGA
CAATGGGGAGAAAACAAGAGCAGCTGCTACAGCACGAGAGGCTACACGAG
AAGAAATGCGCACCGCTCTCGAGCTTGTCTGCGACTATTTGACAGACGCT
TGGGCAACCAAACTCCAAACCCACTGCGGATTCAGCGAGGAGGAAATGAA
ACACGCAGCCGGCAGCCTAAAACGTTCTGTCTGGGAAGGTGAAGCTGACG
CAGAGCAAGACACGGCCATGGAATTGACGCAGGGAAAGAGGTTGAAGGCT
GTAGAAGGGGTAGGGGGAGGAGCGGTTGCACGTGGTGGTGGTGGTGGAGG
AGTAGGGGGAGGGAGGTGCCAAAAAATGGCTGCGATGGGCCCGAGCATTG
CACAAAAGAAGCTGGCCAAGACGAATTTAAAGGGTGTCAAGTCAATTTCC
TCCTTCTTTGATAAGAGGTCGTGA
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Synonyms
Publications