NO09G01250, NO09G01250 (gene) Nannochloropsis oceanica

Overview
NameNO09G01250
Unique NameNO09G01250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length309
Alignment locationchr9:406506..406814 +

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:406506..406814 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR032053MRP-S34
Homology
BLAST of NO09G01250 vs. NCBI_GenBank
Match: XP_005773331.1 (hypothetical protein EMIHUDRAFT_207904 [Emiliania huxleyi CCMP1516] >EOD20902.1 hypothetical protein EMIHUDRAFT_207904 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 73.9 bits (180), Expect = 3.200e-10
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = 0
Query:    2 PPPPGQSLFQVVNGLRHYGVGARLTRSIW----HGEPGTYWDVKRVAL-KEGDP---NHGKAWGVFHWKGVPKGGEQKIRGPLKKQW 81
            P P  Q+LF+V   L  YGVG+++ RS W    +     +W + RV L  +GD      GKAWGV  WKGV + GE+++R PLKK+W
Sbjct:   58 PAPTRQNLFEVARELPKYGVGSKVFRSGWTRNGYDPNEHHWQITRVELWTKGDEEQFQRGKAWGVLTWKGVTEAGERRVRTPLKKEW 144          
BLAST of NO09G01250 vs. NCBI_GenBank
Match: XP_005777777.1 (hypothetical protein EMIHUDRAFT_237766 [Emiliania huxleyi CCMP1516] >EOD25348.1 hypothetical protein EMIHUDRAFT_237766 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 73.9 bits (180), Expect = 3.200e-10
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = 0
Query:    2 PPPPGQSLFQVVNGLRHYGVGARLTRSIW----HGEPGTYWDVKRVAL-KEGDP---NHGKAWGVFHWKGVPKGGEQKIRGPLKKQW 81
            P P  Q+LF+V   L  YGVG+++ RS W    +     +W + RV L  +GD      GKAWGV  WKGV + GE+++R PLKK+W
Sbjct:   58 PAPTRQNLFEVARELPKYGVGSKVFRSGWTRNGYDPNEHHWQITRVELWTKGDEEQFQRGKAWGVLTWKGVTEAGERRVRTPLKKEW 144          
BLAST of NO09G01250 vs. NCBI_GenBank
Match: XP_002116509.1 (hypothetical protein TRIADDRAFT_60507 [Trichoplax adhaerens] >EDV20865.1 hypothetical protein TRIADDRAFT_60507 [Trichoplax adhaerens])

HSP 1 Score: 71.6 bits (174), Expect = 1.600e-9
Identity = 33/80 (41.25%), Postives = 53/80 (66.25%), Query Frame = 0
Query:    8 SLFQVVNGLRHYGVGARLTRSIW--HGEPGTYWDVKRVALKEGDPNHGKAWGVFHWKGVPKGGEQKIRGPLKKQWTIVEG 86
            +L  V+N L++YG+G ++TR+IW  + EP +YW + RV+ K  D  H  AWG+F ++G  +   +KIR   K+QW ++EG
Sbjct:   21 NLPNVLNRLKYYGIGKKVTRAIWLKYDEP-SYWTITRVSFKR-DMYHANAWGIFTFRGKTEEQARKIRSCRKRQWLVLEG 98          
BLAST of NO09G01250 vs. NCBI_GenBank
Match: KLO15747.1 (hypothetical protein SCHPADRAFT_849098 [Schizopora paradoxa])

HSP 1 Score: 68.2 bits (165), Expect = 1.700e-8
Identity = 31/78 (39.74%), Postives = 52/78 (66.67%), Query Frame = 0
Query:    7 QSLFQVVNGLRHYGVGARLTRSIWHGEP--GTYWDVKRVALKEGDPNHGKAWGVFHWKGVPKGGEQKIRGPLKKQWTI 83
            ++L++ ++ L   GVG+R+ ++ W  +   G+Y++V RV+LK+ +  HGKAWG   WKG P   E++IRG LK +W +
Sbjct:   30 RNLYETLSRLPKDGVGSRVYQTRWQSKKIGGSYYEVTRVSLKD-EGKHGKAWGRLVWKGRPVNEEERIRGALKYRWDV 106          
BLAST of NO09G01250 vs. NCBI_GenBank
Match: XP_008616120.1 (hypothetical protein SDRG_11844 [Saprolegnia diclina VS20] >XP_008616121.1 hypothetical protein, variant [Saprolegnia diclina VS20] >EQC30527.1 hypothetical protein SDRG_11844 [Saprolegnia diclina VS20] >EQC30528.1 hypothetical protein, variant [Saprolegnia diclina VS20])

HSP 1 Score: 66.6 bits (161), Expect = 5.100e-8
Identity = 31/80 (38.75%), Postives = 51/80 (63.75%), Query Frame = 0
Query:    8 SLFQVVNGLRHYGVGARLTRSIWH----GEPGTYWDVKRVALKEGDPNHGKAWGVFHWKGVPKGGEQKIRGPLKKQWTIV 84
            +LFQ +   R++GVG ++TR IW      E  +Y ++ RVA  + D  HGKA+G+  ++GV +G E+++ G LK+ W +V
Sbjct:    3 NLFQAICSKRNFGVGQKVTRGIWKRFETAEASSYVEITRVAPSQ-DLKHGKAYGIKVFRGVSEGKERRVDGVLKRDWAVV 81          
BLAST of NO09G01250 vs. NCBI_GenBank
Match: OWZ20113.1 (putative mitochondrial protein [Phytophthora megakarya])

HSP 1 Score: 66.6 bits (161), Expect = 5.100e-8
Identity = 33/80 (41.25%), Postives = 48/80 (60.00%), Query Frame = 0
Query:    7 QSLFQVVNGLRHYGVGARLTRSIW--HGEPGTYWDVKRVALKEGDPNHGKAWGVFHWKGVPKGGEQKIRGPLKKQWTIVE 85
            ++ FQV+   R YGVG R+TR IW  H EP +YW+V R+     D  HGK +G F ++G      +++ G LKK W++ E
Sbjct:    9 KNAFQVLTPTREYGVGKRVTRGIWAKHAEP-SYWEVVRIR-PSPDLKHGKVFGRFTFRGKTDPNVKRMNGVLKKDWSLYE 86          
BLAST of NO09G01250 vs. NCBI_GenBank
Match: XP_012207071.1 (hypothetical protein SPRG_12319 [Saprolegnia parasitica CBS 223.65] >KDO22234.1 hypothetical protein SPRG_12319 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 66.2 bits (160), Expect = 6.600e-8
Identity = 30/80 (37.50%), Postives = 51/80 (63.75%), Query Frame = 0
Query:    8 SLFQVVNGLRHYGVGARLTRSIWH----GEPGTYWDVKRVALKEGDPNHGKAWGVFHWKGVPKGGEQKIRGPLKKQWTIV 84
            +LFQ +   R++GVG ++TR IW      E  +Y ++ R+A  + D  HGKA+G+  ++GV +G E+++ G LK+ W +V
Sbjct:    3 NLFQAICSKRNFGVGQKVTRGIWKRFETAEASSYVEITRIAPSQ-DLKHGKAYGIKVFRGVSEGKERRVDGVLKRDWAVV 81          
BLAST of NO09G01250 vs. NCBI_GenBank
Match: XP_009533262.1 (hypothetical protein PHYSODRAFT_287078 [Phytophthora sojae] >XP_009533265.1 hypothetical protein PHYSODRAFT_352324 [Phytophthora sojae] >EGZ10517.1 hypothetical protein PHYSODRAFT_287078 [Phytophthora sojae] >EGZ10520.1 hypothetical protein PHYSODRAFT_352324 [Phytophthora sojae])

HSP 1 Score: 65.9 bits (159), Expect = 8.600e-8
Identity = 34/80 (42.50%), Postives = 48/80 (60.00%), Query Frame = 0
Query:    7 QSLFQVVNGLRHYGVGARLTRSIW--HGEPGTYWDVKRVALKEGDPNHGKAWGVFHWKGVPKGGEQKIRGPLKKQWTIVE 85
            ++ FQV+   R YGVGAR+TR IW  + EP +YW+V R+     D  HGK +G F ++G      ++I G LKK W+  E
Sbjct:    9 KNAFQVLTPTREYGVGARVTRGIWAKYAEP-SYWEVVRIR-PSPDLKHGKVFGRFTFRGKTDPKVKRINGVLKKDWSFFE 86          
BLAST of NO09G01250 vs. NCBI_GenBank
Match: KDQ07737.1 (hypothetical protein BOTBODRAFT_166639 [Botryobasidium botryosum FD-172 SS1])

HSP 1 Score: 65.5 bits (158), Expect = 1.100e-7
Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 0
Query:    8 SLFQVVNGLRHYGVGARLTRSIW--HGEPGTYWDVKRVALKEGDPNHGKAWGVFHWKGVP-KGGEQKIRGPLKKQWTIVEGT 87
            +L+QV+  L   GVGAR+T+  W   G  G++W+V RV LK+ +  HGK WG   W+G P    ++ IRG LK QW  V  +
Sbjct:   20 TLYQVLAKLPENGVGARVTQRRWAAKGIEGSFWEVTRVRLKD-EGKHGKVWGKLVWRGRPISERDELIRGGLKYQWEDVSSS 100          
BLAST of NO09G01250 vs. NCBI_GenBank
Match: POM68371.1 (hypothetical protein PHPALM_15474 [Phytophthora palmivora var. palmivora] >POM72867.1 Hypothetical protein PHPALM_10358 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 65.5 bits (158), Expect = 1.100e-7
Identity = 33/80 (41.25%), Postives = 48/80 (60.00%), Query Frame = 0
Query:    7 QSLFQVVNGLRHYGVGARLTRSIW--HGEPGTYWDVKRVALKEGDPNHGKAWGVFHWKGVPKGGEQKIRGPLKKQWTIVE 85
            ++ FQV+   R YGVG R+TR IW  + EP +YW+V R+     D  HGK +G F ++G      ++I G LKK W++ E
Sbjct:    9 KNAFQVLTPTREYGVGKRVTRGIWDKYAEP-SYWEVVRIR-PSPDLKHGKVFGRFTFRGKTDPNVKRINGVLKKDWSLYE 86          
The following BLAST results are available for this feature:
BLAST of NO09G01250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005773331.13.200e-1043.68hypothetical protein EMIHUDRAFT_207904 [Emiliania ... [more]
XP_005777777.13.200e-1043.68hypothetical protein EMIHUDRAFT_237766 [Emiliania ... [more]
XP_002116509.11.600e-941.25hypothetical protein TRIADDRAFT_60507 [Trichoplax ... [more]
KLO15747.11.700e-839.74hypothetical protein SCHPADRAFT_849098 [Schizopora... [more]
XP_008616120.15.100e-838.75hypothetical protein SDRG_11844 [Saprolegnia dicli... [more]
OWZ20113.15.100e-841.25putative mitochondrial protein [Phytophthora megak... [more]
XP_012207071.16.600e-837.50hypothetical protein SPRG_12319 [Saprolegnia paras... [more]
XP_009533262.18.600e-842.50hypothetical protein PHYSODRAFT_287078 [Phytophtho... [more]
KDQ07737.11.100e-742.68hypothetical protein BOTBODRAFT_166639 [Botryobasi... [more]
POM68371.11.100e-741.25hypothetical protein PHPALM_15474 [Phytophthora pa... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010613NSK010613Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G01250.1NO09G01250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589078gene_4430Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G01250.1NO09G01250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G01250 ID=NO09G01250|Name=NO09G01250|organism=Nannochloropsis oceanica|type=gene|length=309bp
ATGCCGCCGCCCCCCGGCCAGAGCCTCTTCCAAGTCGTCAACGGCCTGCG
GCATTATGGTGTCGGGGCCCGATTAACCCGCTCGATATGGCACGGCGAGC
CGGGGACGTATTGGGATGTCAAGCGAGTCGCCTTGAAGGAGGGGGACCCA
AACCACGGCAAGGCATGGGGTGTCTTTCATTGGAAAGGTGTACCGAAAGG
CGGAGAGCAGAAGATTCGCGGGCCCTTGAAGAAACAGTGGACGATTGTGG
AGGGAACTGGAGGGAATGGTGGTGGGGCTGAGGGTGGGAGCTCTGCCACG
CTACTATGA
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protein sequence of NO09G01250.1

>NO09G01250.1-protein ID=NO09G01250.1-protein|Name=NO09G01250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=103bp
MPPPPGQSLFQVVNGLRHYGVGARLTRSIWHGEPGTYWDVKRVALKEGDP
NHGKAWGVFHWKGVPKGGEQKIRGPLKKQWTIVEGTGGNGGGAEGGSSAT
LL*
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Synonyms
Publications