NO09G01250.1, NO09G01250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01250.1
Unique NameNO09G01250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length309
Alignment locationchr9:406506..406814 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:406506..406814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G01250.1 vs.
Match: XP_005777777.1 (hypothetical protein EMIHUDRAFT_237766 [Emiliania huxleyi CCMP1516]; EOD25348.1 hypothetical protein EMIHUDRAFT_237766 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 73.9 bits (180), Expect = 3.200e-10
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = 0 
Query:    2 PPPPGQSLFQVVNGLRHYGVGARLTRSIW----HGEPGTYWDVKRVAL-KEGDPNH---GKAWGVFHWKGVPKGGEQKIRGPLKKQW 81
            P P  Q+LF+V   L  YGVG+++ RS W    +     +W + RV L  +GD      GKAWGV  WKGV + GE+++R PLKK+W
Sbjct:   58 PAPTRQNLFEVARELPKYGVGSKVFRSGWTRNGYDPNEHHWQITRVELWTKGDEEQFQRGKAWGVLTWKGVTEAGERRVRTPLKKEW 144
The following BLAST results are available for this feature:
BLAST of NO09G01250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005777777.13.200e-1043.68hypothetical protein EMIHUDRAFT_237766 [Emiliania ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01250NO09G01250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01250.1NO09G01250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01250.1.cds1NO09G01250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01250.1 ID=NO09G01250.1|Name=NO09G01250.1|organism=Nannochloropsis oceanica|type=mRNA|length=309bp
ATGCCGCCGCCCCCCGGCCAGAGCCTCTTCCAAGTCGTCAACGGCCTGCG
GCATTATGGTGTCGGGGCCCGATTAACCCGCTCGATATGGCACGGCGAGC
CGGGGACGTATTGGGATGTCAAGCGAGTCGCCTTGAAGGAGGGGGACCCA
AACCACGGCAAGGCATGGGGTGTCTTTCATTGGAAAGGTGTACCGAAAGG
CGGAGAGCAGAAGATTCGCGGGCCCTTGAAGAAACAGTGGACGATTGTGG
AGGGAACTGGAGGGAATGGTGGTGGGGCTGAGGGTGGGAGCTCTGCCACG
CTACTATGA
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protein sequence of NO09G01250.1

>NO09G01250.1-protein ID=NO09G01250.1-protein|Name=NO09G01250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=103bp
MPPPPGQSLFQVVNGLRHYGVGARLTRSIWHGEPGTYWDVKRVALKEGDP
NHGKAWGVFHWKGVPKGGEQKIRGPLKKQWTIVEGTGGNGGGAEGGSSAT
LL*
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mRNA from alignment at chr9:406506..406814+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01250.1 ID=NO09G01250.1|Name=NO09G01250.1|organism=Nannochloropsis oceanica|type=mRNA|length=309bp|location=Sequence derived from alignment at chr9:406506..406814+ (Nannochloropsis oceanica)
ATGCCGCCGCCCCCCGGCCAGAGCCTCTTCCAAGTCGTCAACGGCCTGCG
GCATTATGGTGTCGGGGCCCGATTAACCCGCTCGATATGGCACGGCGAGC
CGGGGACGTATTGGGATGTCAAGCGAGTCGCCTTGAAGGAGGGGGACCCA
AACCACGGCAAGGCATGGGGTGTCTTTCATTGGAAAGGTGTACCGAAAGG
CGGAGAGCAGAAGATTCGCGGGCCCTTGAAGAAACAGTGGACGATTGTGG
AGGGAACTGGAGGGAATGGTGGTGGGGCTGAGGGTGGGAGCTCTGCCACG
CTACTATGA
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Coding sequence (CDS) from alignment at chr9:406506..406814+

>NO09G01250.1 ID=NO09G01250.1|Name=NO09G01250.1|organism=Nannochloropsis oceanica|type=CDS|length=309bp|location=Sequence derived from alignment at chr9:406506..406814+ (Nannochloropsis oceanica)
ATGCCGCCGCCCCCCGGCCAGAGCCTCTTCCAAGTCGTCAACGGCCTGCG
GCATTATGGTGTCGGGGCCCGATTAACCCGCTCGATATGGCACGGCGAGC
CGGGGACGTATTGGGATGTCAAGCGAGTCGCCTTGAAGGAGGGGGACCCA
AACCACGGCAAGGCATGGGGTGTCTTTCATTGGAAAGGTGTACCGAAAGG
CGGAGAGCAGAAGATTCGCGGGCCCTTGAAGAAACAGTGGACGATTGTGG
AGGGAACTGGAGGGAATGGTGGTGGGGCTGAGGGTGGGAGCTCTGCCACG
CTACTATGA
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Synonyms
Publications