NO09G01110, NO09G01110 (gene) Nannochloropsis oceanica

Overview
NameNO09G01110
Unique NameNO09G01110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1139
Alignment locationchr9:362158..363296 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:362158..363296 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO09G01110 vs. NCBI_GenBank
Match: EWM27661.1 (hypothetical protein Naga_100125g18 [Nannochloropsis gaditana])

HSP 1 Score: 288.5 bits (737), Expect = 1.700e-74
Identity = 145/207 (70.05%), Postives = 163/207 (78.74%), Query Frame = 0 
Query:    6 FLLLLYTYSSASAFFLGGGAPTLIISRSRRTPSLSSSLHMSRDWFTDAAGEALIPDDKLNFVHDFLDNKGKNVVRGPAQVTAPDGRLLDVLPGEEVEIIGGMVYRTYLNGFPAVNEARLRQERQVVLEIKWGDNWETQGFTLEVMGVTGPSCEIYTNRFCEATGCTPKGPMVVKPAYFEVPLTVNTQNVEAVEKLRQVQLGTASIEF 213
            +L+++   S + AF LG    +L         S    L MS +WFTD++GE+LI DDKL FVH+F+DNKGKNVVRGPAQV  PDGR+LDVLPGEEVEIIGG+VYRTY NGFP VNEARLR+E QVVLEIKW +NWETQGFTLEVMGVTG SC  YTNRFCEATGC   GPMVVKPAYFEVP++V TQN   VEKLRQVQLGTA IEF
Sbjct:    5 YLVIMLAMSPSCAFILGCRTSSLC------RFSTVLPLQMSNNWFTDSSGESLISDDKLKFVHEFIDNKGKNVVRGPAQVKVPDGRVLDVLPGEEVEIIGGLVYRTYTNGFPPVNEARLREEGQVVLEIKWNENWETQGFTLEVMGVTGSSCVEYTNRFCEATGCRQNGPMVVKPAYFEVPVSV-TQNEGVVEKLRQVQLGTARIEF 204
The following BLAST results are available for this feature:
BLAST of NO09G01110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27661.11.700e-7470.05hypothetical protein Naga_100125g18 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010593NSK010593Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G01110.1NO09G01110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589144gene_4444Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100125g18gene2886Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G01110.1NO09G01110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G01110 ID=NO09G01110|Name=NO09G01110|organism=Nannochloropsis oceanica|type=gene|length=1139bp
TCAAGAATCGAGAAAAATGCCGAGACATTCTTGACCCACACGCTCGTCGA
AGCCACAGATGTCCTTTGTGAGCTTTGTCAAGGGCGTGCTGTGCATGGAT
GCATCACTAATCACAAGCTGCATTTCCTCACCATTTTAACTGGACCCTTC
GCGTTTCTCATTCATTCTGCTGCCTTCATAAATCAAGCAGGGAGCCGACG
TCGCGTGCAACGACATTCTCACCTCATTGTTCCAAGGGCACCTGCCTCTA
CTCTGACTAACAGAACGACCATGCATCCGCGCGGTTTCCTCCTCTTACTT
TACACCTATTCTTCGGCCAGTGCTTTTTTCCTCGGCGGCGGCGCTCCCAC
CTTGATCATATCCCGCAGCCGCAGGACGCCCTCCTTGTCCTCCTCCCTCC
ACATGAGCCGAGACTGGTTCACAGATGCCGCTGGCGAAGCCCTTATTCCA
GACGACAAACTCAACTTTGTGCACGATTTTCTGGACAACAAGGGAAAGAA
CGTAGTGCGTGGCCCCGCGCAAGTGACAGCACCTGATGGACGCTTGCTCG
ACGTGCTGCCGGGGGAAGAGGTTGAGATTATCGGTGGCATGGTCTACCGC
ACGTATCTCAACGGATTTCCGGCTGTAAACGAAGCGCGTCTTCGTCAAGA
AAGGCAAGTGGTATTGGAGATCAAGTGGGGTGATAACTGGGAGACACAGG
GCTTCACCTTGGAAGTGATGGGTGTGACGGGGCCGTCGTGTGAGATTTAT
ACGAATCGGTTTTGCGAGGCAACGGGGTGTACTCCCAAGGGCCCTATGGT
TGTGAAACCTGCTTATTTTGAAGTGCCCTTGACAGTTAATACTCAAAACG
TAGAGGCGGTGGAAAAGCTGCGACAGGTCCAGCTTGGGACAGCGTCAATT
GAATTTTGAGGGAGAAAGAGGTTAGCCGAGCGATCTCCTCTCCTCTTTTG
TTGTTGTACCCATAGCCATATGGATAAAACCACGGGCCGAAGAAGCCGCG
AGAATAGAAGAGAGAAAAACTGCGGGGGCATCAGCACCAGTAGCTGCAGC
AGCACCGTGAATCGAAGTGAAGTAGCGTATGAGGAGGACTCTATAATAGA
GGATGACTGAGGAATGAATAGCCATACTCGATGTACCAA
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protein sequence of NO09G01110.1

>NO09G01110.1-protein ID=NO09G01110.1-protein|Name=NO09G01110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MHPRGFLLLLYTYSSASAFFLGGGAPTLIISRSRRTPSLSSSLHMSRDWF
TDAAGEALIPDDKLNFVHDFLDNKGKNVVRGPAQVTAPDGRLLDVLPGEE
VEIIGGMVYRTYLNGFPAVNEARLRQERQVVLEIKWGDNWETQGFTLEVM
GVTGPSCEIYTNRFCEATGCTPKGPMVVKPAYFEVPLTVNTQNVEAVEKL
RQVQLGTASIEF*
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Synonyms
Publications