NO09G01110.1, NO09G01110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01110.1
Unique NameNO09G01110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1139
Alignment locationchr9:362158..363296 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:362158..363296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G01110.1 vs.
Match: EWM27661.1 (hypothetical protein Naga_100125g18 [Nannochloropsis gaditana])

HSP 1 Score: 288.1 bits (736), Expect = 2.200e-74
Identity = 145/207 (70.05%), Postives = 163/207 (78.74%), Query Frame = 0
Query:    6 FLLLLYTYSSASAFFLGGGAPTLIISRSRRTPSLSSSLHMSRDWFTDAAGEALIPDDKLNFVHDFLDNKGKNVVRGPAQVTAPDGRLLDVLPGEEVEIIGGMVYRTYLNGFPAVNEARLRQERQVVLEIKWGDNWETQGFTLEVMGVTGPSCEIYTNRFCEATGCTPKGPMVVKPAYFEVPLTVNTQNVEAVEKLRQVQLGTASIEF 213
            +L+++   S + AF LG    +L         S    L MS +WFTD++GE+LI DDKL FVH+F+DNKGKNVVRGPAQV  PDGR+LDVLPGEEVEIIGG+VYRTY NGFP VNEARLR+E QVVLEIKW +NWETQGFTLEVMGVTG SC  YTNRFCEATGC   GPMVVKPAYFEVP++V TQN   VEKLRQVQLGTA IEF
Sbjct:    5 YLVIMLAMSPSCAFILGCRTSSLCRF------STVLPLQMSNNWFTDSSGESLISDDKLKFVHEFIDNKGKNVVRGPAQVKVPDGRVLDVLPGEEVEIIGGLVYRTYTNGFPPVNEARLREEGQVVLEIKWNENWETQGFTLEVMGVTGSSCVEYTNRFCEATGCRQNGPMVVKPAYFEVPVSV-TQNEGVVEKLRQVQLGTARIEF 204          
The following BLAST results are available for this feature:
BLAST of NO09G01110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27661.12.200e-7470.05hypothetical protein Naga_100125g18 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01110NO09G01110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01110.1NO09G01110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01110.1.cds1NO09G01110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01110.1 ID=NO09G01110.1|Name=NO09G01110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1139bp
TCAAGAATCGAGAAAAATGCCGAGACATTCTTGACCCACACGCTCGTCGA
AGCCACAGATGTCCTTTGTGAGCTTTGTCAAGGGCGTGCTGTGCATGGAT
GCATCACTAATCACAAGCTGCATTTCCTCACCATTTTAACTGGACCCTTC
GCGTTTCTCATTCATTCTGCTGCCTTCATAAATCAAGCAGGGAGCCGACG
TCGCGTGCAACGACATTCTCACCTCATTGTTCCAAGGGCACCTGCCTCTA
CTCTGACTAACAGAACGACCATGCATCCGCGCGGTTTCCTCCTCTTACTT
TACACCTATTCTTCGGCCAGTGCTTTTTTCCTCGGCGGCGGCGCTCCCAC
CTTGATCATATCCCGCAGCCGCAGGACGCCCTCCTTGTCCTCCTCCCTCC
ACATGAGCCGAGACTGGTTCACAGATGCCGCTGGCGAAGCCCTTATTCCA
GACGACAAACTCAACTTTGTGCACGATTTTCTGGACAACAAGGGAAAGAA
CGTAGTGCGTGGCCCCGCGCAAGTGACAGCACCTGATGGACGCTTGCTCG
ACGTGCTGCCGGGGGAAGAGGTTGAGATTATCGGTGGCATGGTCTACCGC
ACGTATCTCAACGGATTTCCGGCTGTAAACGAAGCGCGTCTTCGTCAAGA
AAGGCAAGTGGTATTGGAGATCAAGTGGGGTGATAACTGGGAGACACAGG
GCTTCACCTTGGAAGTGATGGGTGTGACGGGGCCGTCGTGTGAGATTTAT
ACGAATCGGTTTTGCGAGGCAACGGGGTGTACTCCCAAGGGCCCTATGGT
TGTGAAACCTGCTTATTTTGAAGTGCCCTTGACAGTTAATACTCAAAACG
TAGAGGCGGTGGAAAAGCTGCGACAGGTCCAGCTTGGGACAGCGTCAATT
GAATTTTGAGGGAGAAAGAGGTTAGCCGAGCGATCTCCTCTCCTCTTTTG
TTGTTGTACCCATAGCCATATGGATAAAACCACGGGCCGAAGAAGCCGCG
AGAATAGAAGAGAGAAAAACTGCGGGGGCATCAGCACCAGTAGCTGCAGC
AGCACCGTGAATCGAAGTGAAGTAGCGTATGAGGAGGACTCTATAATAGA
GGATGACTGAGGAATGAATAGCCATACTCGATGTACCAA
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protein sequence of NO09G01110.1

>NO09G01110.1-protein ID=NO09G01110.1-protein|Name=NO09G01110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MHPRGFLLLLYTYSSASAFFLGGGAPTLIISRSRRTPSLSSSLHMSRDWF
TDAAGEALIPDDKLNFVHDFLDNKGKNVVRGPAQVTAPDGRLLDVLPGEE
VEIIGGMVYRTYLNGFPAVNEARLRQERQVVLEIKWGDNWETQGFTLEVM
GVTGPSCEIYTNRFCEATGCTPKGPMVVKPAYFEVPLTVNTQNVEAVEKL
RQVQLGTASIEF*
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mRNA from alignment at chr9:362158..363296+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01110.1 ID=NO09G01110.1|Name=NO09G01110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1139bp|location=Sequence derived from alignment at chr9:362158..363296+ (Nannochloropsis oceanica)
TCAAGAATCGAGAAAAATGCCGAGACATTCTTGACCCACACGCTCGTCGA AGCCACAGATGTCCTTTGTGAGCTTTGTCAAGGGCGTGCTGTGCATGGAT GCATCACTAATCACAAGCTGCATTTCCTCACCATTTTAACTGGACCCTTC GCGTTTCTCATTCATTCTGCTGCCTTCATAAATCAAGCAGGGAGCCGACG TCGCGTGCAACGACATTCTCACCTCATTGTTCCAAGGGCACCTGCCTCTA CTCTGACTAACAGAACGACCATGCATCCGCGCGGTTTCCTCCTCTTACTT TACACCTATTCTTCGGCCAGTGCTTTTTTCCTCGGCGGCGGCGCTCCCAC CTTGATCATATCCCGCAGCCGCAGGACGCCCTCCTTGTCCTCCTCCCTCC ACATGAGCCGAGACTGGTTCACAGATGCCGCTGGCGAAGCCCTTATTCCA GACGACAAACTCAACTTTGTGCACGATTTTCTGGACAACAAGGGAAAGAA CGTAGTGCGTGGCCCCGCGCAAGTGACAGCACCTGATGGACGCTTGCTCG ACGTGCTGCCGGGGGAAGAGGTTGAGATTATCGGTGGCATGGTCTACCGC ACGTATCTCAACGGATTTCCGGCTGTAAACGAAGCGCGTCTTCGTCAAGA AAGGCAAGTGGTATTGGAGATCAAGTGGGGTGATAACTGGGAGACACAGG GCTTCACCTTGGAAGTGATGGGTGTGACGGGGCCGTCGTGTGAGATTTAT ACGAATCGGTTTTGCGAGGCAACGGGGTGTACTCCCAAGGGCCCTATGGT TGTGAAACCTGCTTATTTTGAAGTGCCCTTGACAGTTAATACTCAAAACG TAGAGGCGGTGGAAAAGCTGCGACAGGTCCAGCTTGGGACAGCGTCAATT GAATTTTGAGGGAGAAAGAGGTTAGCCGAGCGATCTCCTCTCCTCTTTTG TTGTTGTACCCATAGCCATATGGATAAAACCACGGGCCGAAGAAGCCGCG AGAATAGAAGAGAGAAAAACTGCGGGGGCATCAGCACCAGTAGCTGCAGC AGCACCGTGAATCGAAGTGAAGTAGCGTATGAGGAGGACTCTATAATAGA GGATGACTGAGGAATGAATAGCCATACTCGATGTACCAA
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Coding sequence (CDS) from alignment at chr9:362158..363296+

>NO09G01110.1 ID=NO09G01110.1|Name=NO09G01110.1|organism=Nannochloropsis oceanica|type=CDS|length=639bp|location=Sequence derived from alignment at chr9:362158..363296+ (Nannochloropsis oceanica)
ATGCATCCGCGCGGTTTCCTCCTCTTACTTTACACCTATTCTTCGGCCAG
TGCTTTTTTCCTCGGCGGCGGCGCTCCCACCTTGATCATATCCCGCAGCC
GCAGGACGCCCTCCTTGTCCTCCTCCCTCCACATGAGCCGAGACTGGTTC
ACAGATGCCGCTGGCGAAGCCCTTATTCCAGACGACAAACTCAACTTTGT
GCACGATTTTCTGGACAACAAGGGAAAGAACGTAGTGCGTGGCCCCGCGC
AAGTGACAGCACCTGATGGACGCTTGCTCGACGTGCTGCCGGGGGAAGAG
GTTGAGATTATCGGTGGCATGGTCTACCGCACGTATCTCAACGGATTTCC
GGCTGTAAACGAAGCGCGTCTTCGTCAAGAAAGGCAAGTGGTATTGGAGA
TCAAGTGGGGTGATAACTGGGAGACACAGGGCTTCACCTTGGAAGTGATG
GGTGTGACGGGGCCGTCGTGTGAGATTTATACGAATCGGTTTTGCGAGGC
AACGGGGTGTACTCCCAAGGGCCCTATGGTTGTGAAACCTGCTTATTTTG
AAGTGCCCTTGACAGTTAATACTCAAAACGTAGAGGCGGTGGAAAAGCTG
CGACAGGTCCAGCTTGGGACAGCGTCAATTGAATTTTGA
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Synonyms
Publications