NO09G01070, NO09G01070 (gene) Nannochloropsis oceanica

Overview
NameNO09G01070
Unique NameNO09G01070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length806
Alignment locationchr9:355461..356266 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:355461..356266 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR036875Znf_CCHC_sf
Homology
The following BLAST results are available for this feature:
BLAST of NO09G01070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010590NSK010590Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G01070.1NO09G01070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G01070.1NO09G01070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G01070 ID=NO09G01070|Name=NO09G01070|organism=Nannochloropsis oceanica|type=gene|length=806bp
ATGTCTTCCCACCTCTTGGGCGGGGGACGGAGGACGGTCGTGACTGACCT
TCGCAAGGGTCCTTACCAACGCATGCGAGAGGATAAAAAGAGCGCTATGT
GCCAGAAGTGTAATCACCCAGGACACTGGACATACGAATGCAAGGCGAAA
GCTCGGCCCTACCAGAAGCGAGAGAGTAGGACTGCTATCTTAGAAAACCC
AGGCCTGAAACCTTCCTTCTCCCTGGATGTGCCTCCCGGGTACGAGACCA
AGGAACAAAAGGAGGGTAAAATGCAGGCGGAGGAGAACAAATCCAAGAAA
AGTAAGAGCAAAAGCAAAAAGGCGTCTAGCGGCAGTAAGAGGAAGATAAG
TGGAGGGAAGAAGCGGCGTCGGTCTCCTTCACCCTCTTCCTCGTCTTCTT
CCTCTCCTTCTTCCTCTCACTCGTCGAATAGTGACAGCAGCAGCGATTCT
GACAGCAGCAGCGATTCTGACAGCAGCAGCAGCAGCGGCAGTAGTCGTAG
TAGCAGCAGCAGCAGCAGCAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGTATTAGTAGTAGTAGCAGTAGT
AGTAGTAGTAGTGGATCCTCCCCCTCTTCCTCTTCCGGCTCCTCCTCCTC
CTCTTCCTCTTCATCTTCCTCCTCCTCCTCCTCCTCTCCCGATTCGGGTT
ACGATTCTGACTCATCCTCGTCCCCCTCGGACGAAAAACGTTAATAGGTG
CCAACAATCCTTAAAGCAAGAAGCTAAAGCAACGAAGACAAGCTTCAATG
TCAATC
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protein sequence of NO09G01070.1

>NO09G01070.1-protein ID=NO09G01070.1-protein|Name=NO09G01070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MSSHLLGGGRRTVVTDLRKGPYQRMREDKKSAMCQKCNHPGHWTYECKAK
ARPYQKRESRTAILENPGLKPSFSLDVPPGYETKEQKEGKMQAEENKSKK
SKSKSKKASSGSKRKISGGKKRRRSPSPSSSSSSSPSSSHSSNSDSSSDS
DSSSDSDSSSSSGSSRSSSSSSSSSSSSSSSSSSSSSSSSSSSISSSSSS
SSSSGSSPSSSSGSSSSSSSSSSSSSSSSPDSGYDSDSSSSPSDEKR*
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Synonyms
Publications