NO09G01070.1, NO09G01070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01070.1
Unique NameNO09G01070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length806
Alignment locationchr9:355461..356266 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:355461..356266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO09G01070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01070NO09G01070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01070.1NO09G01070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01070.1.cds1NO09G01070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01070.1 ID=NO09G01070.1|Name=NO09G01070.1|organism=Nannochloropsis oceanica|type=mRNA|length=806bp
ATGTCTTCCCACCTCTTGGGCGGGGGACGGAGGACGGTCGTGACTGACCT
TCGCAAGGGTCCTTACCAACGCATGCGAGAGGATAAAAAGAGCGCTATGT
GCCAGAAGTGTAATCACCCAGGACACTGGACATACGAATGCAAGGCGAAA
GCTCGGCCCTACCAGAAGCGAGAGAGTAGGACTGCTATCTTAGAAAACCC
AGGCCTGAAACCTTCCTTCTCCCTGGATGTGCCTCCCGGGTACGAGACCA
AGGAACAAAAGGAGGGTAAAATGCAGGCGGAGGAGAACAAATCCAAGAAA
AGTAAGAGCAAAAGCAAAAAGGCGTCTAGCGGCAGTAAGAGGAAGATAAG
TGGAGGGAAGAAGCGGCGTCGGTCTCCTTCACCCTCTTCCTCGTCTTCTT
CCTCTCCTTCTTCCTCTCACTCGTCGAATAGTGACAGCAGCAGCGATTCT
GACAGCAGCAGCGATTCTGACAGCAGCAGCAGCAGCGGCAGTAGTCGTAG
TAGCAGCAGCAGCAGCAGCAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGTATTAGTAGTAGTAGCAGTAGT
AGTAGTAGTAGTGGATCCTCCCCCTCTTCCTCTTCCGGCTCCTCCTCCTC
CTCTTCCTCTTCATCTTCCTCCTCCTCCTCCTCCTCTCCCGATTCGGGTT
ACGATTCTGACTCATCCTCGTCCCCCTCGGACGAAAAACGTTAATAGGTG
CCAACAATCCTTAAAGCAAGAAGCTAAAGCAACGAAGACAAGCTTCAATG
TCAATC
back to top

protein sequence of NO09G01070.1

>NO09G01070.1-protein ID=NO09G01070.1-protein|Name=NO09G01070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MSSHLLGGGRRTVVTDLRKGPYQRMREDKKSAMCQKCNHPGHWTYECKAK
ARPYQKRESRTAILENPGLKPSFSLDVPPGYETKEQKEGKMQAEENKSKK
SKSKSKKASSGSKRKISGGKKRRRSPSPSSSSSSSPSSSHSSNSDSSSDS
DSSSDSDSSSSSGSSRSSSSSSSSSSSSSSSSSSSSSSSSSSSISSSSSS
SSSSGSSPSSSSGSSSSSSSSSSSSSSSSPDSGYDSDSSSSPSDEKR*
back to top

mRNA from alignment at chr9:355461..356266-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01070.1 ID=NO09G01070.1|Name=NO09G01070.1|organism=Nannochloropsis oceanica|type=mRNA|length=806bp|location=Sequence derived from alignment at chr9:355461..356266- (Nannochloropsis oceanica)
ATGTCTTCCCACCTCTTGGGCGGGGGACGGAGGACGGTCGTGACTGACCT
TCGCAAGGGTCCTTACCAACGCATGCGAGAGGATAAAAAGAGCGCTATGT
GCCAGAAGTGTAATCACCCAGGACACTGGACATACGAATGCAAGGCGAAA
GCTCGGCCCTACCAGAAGCGAGAGAGTAGGACTGCTATCTTAGAAAACCC
AGGCCTGAAACCTTCCTTCTCCCTGGATGTGCCTCCCGGGTACGAGACCA
AGGAACAAAAGGAGGGTAAAATGCAGGCGGAGGAGAACAAATCCAAGAAA
AGTAAGAGCAAAAGCAAAAAGGCGTCTAGCGGCAGTAAGAGGAAGATAAG
TGGAGGGAAGAAGCGGCGTCGGTCTCCTTCACCCTCTTCCTCGTCTTCTT
CCTCTCCTTCTTCCTCTCACTCGTCGAATAGTGACAGCAGCAGCGATTCT
GACAGCAGCAGCGATTCTGACAGCAGCAGCAGCAGCGGCAGTAGTCGTAG
TAGCAGCAGCAGCAGCAGCAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGTATTAGTAGTAGTAGCAGTAGT
AGTAGTAGTAGTGGATCCTCCCCCTCTTCCTCTTCCGGCTCCTCCTCCTC
CTCTTCCTCTTCATCTTCCTCCTCCTCCTCCTCCTCTCCCGATTCGGGTT
ACGATTCTGACTCATCCTCGTCCCCCTCGGACGAAAAACGTTAATAGGTG
CCAACAATCCTTAAAGCAAGAAGCTAAAGCAACGAAGACAAGCTTCAATG
TCAATC
back to top

Coding sequence (CDS) from alignment at chr9:355461..356266-

>NO09G01070.1 ID=NO09G01070.1|Name=NO09G01070.1|organism=Nannochloropsis oceanica|type=CDS|length=744bp|location=Sequence derived from alignment at chr9:355461..356266- (Nannochloropsis oceanica)
ATGTCTTCCCACCTCTTGGGCGGGGGACGGAGGACGGTCGTGACTGACCT
TCGCAAGGGTCCTTACCAACGCATGCGAGAGGATAAAAAGAGCGCTATGT
GCCAGAAGTGTAATCACCCAGGACACTGGACATACGAATGCAAGGCGAAA
GCTCGGCCCTACCAGAAGCGAGAGAGTAGGACTGCTATCTTAGAAAACCC
AGGCCTGAAACCTTCCTTCTCCCTGGATGTGCCTCCCGGGTACGAGACCA
AGGAACAAAAGGAGGGTAAAATGCAGGCGGAGGAGAACAAATCCAAGAAA
AGTAAGAGCAAAAGCAAAAAGGCGTCTAGCGGCAGTAAGAGGAAGATAAG
TGGAGGGAAGAAGCGGCGTCGGTCTCCTTCACCCTCTTCCTCGTCTTCTT
CCTCTCCTTCTTCCTCTCACTCGTCGAATAGTGACAGCAGCAGCGATTCT
GACAGCAGCAGCGATTCTGACAGCAGCAGCAGCAGCGGCAGTAGTCGTAG
TAGCAGCAGCAGCAGCAGCAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGTATTAGTAGTAGTAGCAGTAGT
AGTAGTAGTAGTGGATCCTCCCCCTCTTCCTCTTCCGGCTCCTCCTCCTC
CTCTTCCTCTTCATCTTCCTCCTCCTCCTCCTCCTCTCCCGATTCGGGTT
ACGATTCTGACTCATCCTCGTCCCCCTCGGACGAAAAACGTTAA
back to top
Synonyms
Publications