NO09G01040, NO09G01040 (gene) Nannochloropsis oceanica

Overview
NameNO09G01040
Unique NameNO09G01040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length777
Alignment locationchr9:350094..350870 -

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Properties
Property NameValue
DescriptionCS-like domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:350094..350870 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008978HSP20-like_chaperone
IPR037898NudC_fam
IPR007052CS_dom
Homology
BLAST of NO09G01040 vs. NCBI_GenBank
Match: EWM27682.1 (CS-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 303.1 bits (775), Expect = 8.100e-79
Identity = 162/239 (67.78%), Postives = 182/239 (76.15%), Query Frame = 0
Query:   19 VVLLFASTLPLCQGWFPRLCNAPPSSSRPHAS-RRARGLVLCVQGGGGPIGIGWVGDRYSWTENDWELEVTVPVPPETRKEDVLFKAAATSLKLGLVNSTEMLLGGKLKGRIALDGTYWSLEGFGPERAVKLLLEKKEGALENNMDWRRVLAEEAATETQYQEAEKFDTQEYVHQMLGPGGVNMSLVDKEMFGGLAGGVMRNVSRDTLREFVEAKVLGDASGL----GPSNMKNEDEEE 253
            V + F     +CQGWF   C A P    P+   +R RG V C+QGGGGP G+G V  +YSWTEN+WE+         TRKEDVLFKAAATS+KLGLVNSTE+LLGGKL GRIALDGTYWSLEG G  RAVKLLLEKK GALENNMDWRRVL+EEAATE +YQEAEKFDTQ Y+HQMLGPGGVNMSLVD+EMFGGLAGGVM NVS++ LRE+VE KVL DA+G+    G S    E  EE
Sbjct:   30 VWISFVFCAGVCQGWF-LCCRARP----PYLMLQRTRGNVHCLQGGGGPGGVGRVAGKYSWTENEWEVXXXXXXXARTRKEDVLFKAAATSVKLGLVNSTELLLGGKLMGRIALDGTYWSLEGEGNARAVKLLLEKKLGALENNMDWRRVLSEEAATEVEYQEAEKFDTQAYIHQMLGPGGVNMSLVDREMFGGLAGGVMANVSQEALREYVEGKVLDDATGMASQGGRSGGGGEQHEE 263          
BLAST of NO09G01040 vs. NCBI_GenBank
Match: EJK54452.1 (hypothetical protein THAOC_25915 [Thalassiosira oceanica])

HSP 1 Score: 84.7 bits (208), Expect = 4.500e-13
Identity = 73/232 (31.47%), Postives = 107/232 (46.12%), Query Frame = 0
Query:   42 PSSSRPHASRRARGLVLCVQGGGGPIGIGWVGDRYSWTENDWELEVTVPVPPETRKEDVLFKAAATSLKLGLVNSTEMLLG-GKLKGRIALDGTYWSLEG-FGPERAVKLLLEK------KEGALE-----NNMDWRRVLA--EEAATETQYQEAEKFDTQEYVHQM-LGPGGVNMSLVDKEMFGGLA--GGVMRNVS-RDTLREFVEAKVLGD--ASGLGPSNMKNEDEEE 253
            PS  R     R RG      G G       V D+YSW E  +E+EV V  PP T  +DV FK  +  + L L + T +L G  K++G I +DGT+WS+EG    ER V + +EK        G  +        DW+ V    E+  +  +Y E E  D +EY  ++ +    ++MS VDK +F   A  GG     S +D     +E + L     +GL    ++  D +E
Sbjct:   27 PSKYRSADRSRGRGNSQVFSGVG-------VADKYSWNEEQFEIEVKVVAPPGTAAKDVKFKCKSDGVDLRLGDGTVLLDGERKVRGNICVDGTFWSIEGPVEEERTVTVTIEKHFLPTSSSGGTQTYDSATQFDWKGVYLNDEDEVSLREYDEPEVLDVREYASKLGVDIDNIDMSKVDKTLFSSKAAPGGEESEASKKDGFHFDIETETLDQLTRTGLAKEIVQQADGDE 251          
BLAST of NO09G01040 vs. NCBI_GenBank
Match: GAX14257.1 (hypothetical protein FisN_1Hh452 [Fistulifera solaris])

HSP 1 Score: 84.3 bits (207), Expect = 5.900e-13
Identity = 75/245 (30.61%), Postives = 116/245 (47.35%), Query Frame = 0
Query:   33 WFPRLCNAP-----PSSSRPHASRR--ARGLVLCVQGGGGPIGIGWVGDRYSWTENDWELEVTVPVPPETRKEDVLFKAAATSLKLGLV-NSTEMLLGGK--LKGRIALDGTYWSLEGFGPE----RAVKLLLEKKEGALENNM-----DWRRVLAE--EAATETQYQEAEKFDTQEYVHQM-LGPGGVNMSLVDKEMFGGLAGGVMRNVSRDTLREFVEAKVLGDASGLGPSNMKNEDEEEDDV 256
            WF   C  P     P    P A RR   RG+VL   GG G      +   Y W E  +E++VTV VP ETR +D++F+    S+ L L  +   +LL G   L+GR+ LDGTYW +     +    R V + +EK     +++      DW+ V A   E   E  Y E E+ + +EY   + +    +NMS+VDK MF         N+++++L E  +A ++ + +          D+E + V
Sbjct:    7 WFSFWCLWPVYEVVPFVISPRAVRRTPTRGIVLF--GGRG------IASGYRWKEEAFEIDVTVQVPKETRAKDIIFRPTVNSIDLRLKGDDAPVLLDGSRTLRGRVNLDGTYWVISDSEDKDDAFREVTVTIEKLIRTPQDDFEVVEYDWKGVYANDTEEVLERTYDEPEELNVREYAASLGVDIDNINMSMVDKTMF-----STGMNITKNSLDELNKAGLIKEITQQADGTEYEIDDEGNAV 238          
BLAST of NO09G01040 vs. NCBI_GenBank
Match: CBJ26179.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 81.3 bits (199), Expect = 5.000e-12
Identity = 56/153 (36.60%), Postives = 77/153 (50.33%), Query Frame = 0
Query:   76 YSWTENDWELEVTVPVPPETRKEDVLFKAAATSLKLGLVNSTEMLLGGKLKGRIALDGTYWSLEGFGP--ERAVKLLLEK---KEGALENNM--DWRRVLAEEAATETQYQEAEK-FDTQEYVHQMLGPGGVNMSLVDKEMFGGLAGGVMRNV 221
            YSWTE D ++EV VP+PP T  + V      TSL LGL      +L G LKG++  D ++W++E      E+ + L LEK    E    N+M  DW  VL  E      Y + +K FD  EYV +M      ++  VDK MF  L   +  N+
Sbjct:  214 YSWTETDSDMEVRVPLPPGTAAKSVQLSVTKTSLTLGLKGREGPVLKGSLKGQVHADESHWTMEEMEDTGEKVLYLCLEKVADMEALAANSMPQDWVGVLEGEEPLNVYYPDKDKDFDVGEYVKRMGYDRERDIGKVDKAMFSDLTAEMKENL 366          
BLAST of NO09G01040 vs. NCBI_GenBank
Match: GAX20066.1 (hypothetical protein FisN_1Lh452 [Fistulifera solaris])

HSP 1 Score: 81.3 bits (199), Expect = 5.000e-12
Identity = 74/243 (30.45%), Postives = 116/243 (47.74%), Query Frame = 0
Query:   33 WFPRLCNAP-----PSSSRPHASRRARGLVLCVQGGGGPIGIGWVGDRYSWTENDWELEVTVPVPPETRKEDVLFKAAATSLKLGLV-NSTEMLLGGK--LKGRIALDGTYW----SLEGFGPERAVKLLLEKKEGALENNM-----DWRRVLAE--EAATETQYQEAEKFDTQEYVHQM-LGPGGVNMSLVDKEMFGGLAGGVMRNVSRDTLREFVEAKVLGDASGLGPSNMKNEDEEEDDV 256
            WF   C  P     P    P A R    +   + GG G      V   Y W E  +E++VTV VP ETR +D++F+    S+ L L  +   +LL G   L+GR+ LDGTYW    S E     R V + +EK     +++      DW+ V A   E   E  Y E E+ + +EY   + +    +NMS+VDK MF   + G+  N+++++L E  +A ++ + +        + D+E + V
Sbjct:    7 WFSFWCLWPMYEVVPFLIIPRAVRLTPTVGTVLFGGRG------VATSYRWKEEAFEIDVTVQVPKETRAKDIIFRPTVNSIDLRLKGDDAPVLLDGSRTLRGRVNLDGTYWVISDSEEKDDAFREVTVTIEKLIRTPQDDFEVVEYDWKGVYANDTEEVLERTYDEPEELNVREYAASLGVDIDNINMSMVDKTMF---SSGM--NITKNSLDELNKAGLIKEITQQADGTEYDIDDEGNAV 238          
BLAST of NO09G01040 vs. NCBI_GenBank
Match: XP_002181698.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC46912.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 73.2 bits (178), Expect = 1.400e-9
Identity = 55/189 (29.10%), Postives = 97/189 (51.32%), Query Frame = 0
Query:   72 VGDRYSWTENDWELEVTVPVPPETRKEDVLFKAAATSLKL-----------GLVNSTEMLLGG--KLKGRIALDGTYW---SLEGFGPERAVKLLLEK-----KEGALENNMDWRRVLAE--EAATETQYQEAEKFDTQEYVHQM-LGPGGVNMSLVDKEMFGGLAGGVMRNVSRDTLREFVEAKVLGD 237
            +   Y+W E  +E++VTV VP +   ++++F+    S+ L           G  + T +LL G  KL+G++ LDGTYW    L+    +R V + +EK     K+     + DW+ +  +  E   E +Y E EK + +EY  ++ +    ++MS+VDK MF   + G+  N+++  + E  +A  L D
Sbjct:   72 IATNYTWKEEAFEIDVTVTVPADVVAKNIIFQPTGRSIDLRYKSETKKGSNGDRSKTIVLLDGSRKLRGKVNLDGTYWVISDLQDDFAQRQVTVTIEKIVRTPKDDFEVVDYDWKGIYVDDTEEVLERKYDEPEKLNVREYAAKLGVDIDNIDMSMVDKTMF---SSGM--NLTQKNMDELTKAGYLSD 255          
BLAST of NO09G01040 vs. NCBI_GenBank
Match: OEU21247.1 (hypothetical protein FRACYDRAFT_181258 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 67.0 bits (162), Expect = 9.700e-8
Identity = 59/211 (27.96%), Postives = 90/211 (42.65%), Query Frame = 0
Query:   72 VGDRYSWTENDWELEVTVPVPPETRKEDVLFKAAATSLKLGLVNSTEMLL----------------------GGKLKGRIALDGTYWSLEGFGPE-------------RAVKLLLEKKEGALENNM-----DWRRVLA--EEAATETQYQEAEKFDTQEYVHQM-LGPGGVNMSLVDKEMF-GGLAGGVMRNVSRDTLREFVEAKVLGDAS 239
            +   Y+W E  +++E+ V VP ETR +D+ FK    SL L L  S                             KL+GRI LDGTYW +    P+               V + +EK+    ++       DW  V    EE  T  +Y  AE+ + ++Y   M +    ++M+LVDK MF  GL      NV++ TL    EA ++ + +
Sbjct:   65 IAPSYTWQEEAFDIEIIVKVPKETRAKDIHFKVKPNSLDLRLNASXXXXXXXXXXXXXXXXXXXXXXXXLDPSRKLRGRIVLDGTYWIISDPDPDDXXXXXXXXXXXXXEVTVTIEKQIRTPKDEFDIIEYDWNGVYEEDEEEVTYRKYDVAEELNVRDYAASMGVDIDNIDMNLVDKSMFTSGL------NVTKSTLDNMKEAGLMTEVT 269          
BLAST of NO09G01040 vs. NCBI_GenBank
Match: OQR87688.1 (nuclear migration protein nudC-like protein [Achlya hypogyna])

HSP 1 Score: 65.5 bits (158), Expect = 2.800e-7
Identity = 42/120 (35.00%), Postives = 64/120 (53.33%), Query Frame = 0
Query:   57 VLCVQGGGGPIGIGWVGDRYSWTENDWELEVTVPVPPETRKEDVLFKAAATSLKLGLVNSTEMLLGGKLKGRIALDGTYWSLEGFGPERAVKLLLEKKEGALENNMDWRRVLAEEAATET 177
            V+   G   P+G G   D+YSWT++  +L V++PVP  T+  D+  K A TSL++  +N  E L+ G L G+I  + ++WSLE       + L LEK          W+ VL  +A  +T
Sbjct:  111 VMTDDGKQVPVGNGGQTDKYSWTQSLQDLTVSLPVPKGTKSRDLSVKMAQTSLRVA-INGQEPLVDGALAGKIKTEESFWSLEA---NETLVLSLEK----APPQTWWKTVLQGDAEIDT 222          
BLAST of NO09G01040 vs. NCBI_GenBank
Match: XP_012194949.1 (hypothetical protein SPRG_01339 [Saprolegnia parasitica CBS 223.65] >KDO34065.1 hypothetical protein SPRG_01339 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 65.1 bits (157), Expect = 3.700e-7
Identity = 46/141 (32.62%), Postives = 74/141 (52.48%), Query Frame = 0
Query:   39 NAPPSSS-RPHASRR--ARGLVLCVQGGGGPIGIGWVGDRYSWTENDWELEVTVPVPPETRKEDVLFKAAATSLKLGLVNSTEMLLGGKLKGRIALDGTYWSLEGFGPERAVKLLLEKKEGALENNMDWRRVLAEEAATET 177
            +APP+++ RP  S++  AR + L   G   P G G   D+YSWT++  EL VT+PVP  T+  D+  +  + S+ + +   +  L+ G   G+I ++ + WSL+      AV L LEK          W+ VL  +A  +T
Sbjct:   72 HAPPATTVRPPPSKQPDARPMALTDDGKQVPEGNGGRTDKYSWTQSLQELTVTIPVPAGTKSRDLDVRMTSASVHVAIKGHSAPLVHGTFPGKIKVEESLWSLDS---SEAVVLSLEK----ATPKTWWKSVLEGDAEIDT 205          
The following BLAST results are available for this feature:
BLAST of NO09G01040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 9
Match NameE-valueIdentityDescription
EWM27682.18.100e-7967.78CS-like domain protein [Nannochloropsis gaditana][more]
EJK54452.14.500e-1331.47hypothetical protein THAOC_25915 [Thalassiosira oc... [more]
GAX14257.15.900e-1330.61hypothetical protein FisN_1Hh452 [Fistulifera sola... [more]
CBJ26179.15.000e-1236.60conserved unknown protein [Ectocarpus siliculosus][more]
GAX20066.15.000e-1230.45hypothetical protein FisN_1Lh452 [Fistulifera sola... [more]
XP_002181698.11.400e-929.10predicted protein [Phaeodactylum tricornutum CCAP ... [more]
OEU21247.19.700e-827.96hypothetical protein FRACYDRAFT_181258 [Fragilario... [more]
OQR87688.12.800e-735.00nuclear migration protein nudC-like protein [Achly... [more]
XP_012194949.13.700e-732.62hypothetical protein SPRG_01339 [Saprolegnia paras... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010582NSK010582Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G01040.1NO09G01040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100104g21gene2876Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G01040.1NO09G01040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G01040 ID=NO09G01040|Name=NO09G01040|organism=Nannochloropsis oceanica|type=gene|length=777bp
ATGAACACAATCCCGCCAACAAAGAAAAAAAGAGCAACACCCCCTTATCG
TGTCGTCGTGCTCCTCTTTGCGTCAACCCTGCCCCTCTGTCAAGGCTGGT
TTCCTCGTCTCTGCAATGCCCCTCCCTCATCCTCACGACCTCACGCTTCG
CGTCGTGCCCGGGGCCTTGTGCTGTGTGTGCAGGGAGGGGGCGGTCCCAT
AGGGATAGGATGGGTTGGCGACCGATATTCGTGGACGGAGAACGATTGGG
AACTGGAAGTCACGGTGCCCGTCCCACCGGAAACGCGCAAGGAGGATGTG
CTGTTCAAAGCGGCAGCCACGAGTCTCAAGCTGGGGTTGGTGAATAGCAC
AGAGATGTTGTTGGGTGGAAAGCTCAAGGGGCGGATTGCCTTGGACGGCA
CCTATTGGAGCTTGGAAGGCTTTGGTCCCGAGCGGGCAGTGAAGCTGCTA
CTAGAAAAGAAAGAGGGTGCCTTGGAAAATAATATGGACTGGCGGCGAGT
CTTGGCGGAGGAAGCCGCAACAGAGACTCAGTACCAGGAGGCAGAGAAGT
TCGACACGCAGGAATATGTACACCAGATGTTGGGACCTGGGGGTGTGAAT
ATGAGTTTAGTGGACAAGGAGATGTTTGGAGGGTTGGCGGGGGGGGTGAT
GCGGAATGTGAGTAGAGACACCCTCAGGGAGTTTGTGGAGGCCAAGGTTT
TGGGTGATGCTTCGGGGCTAGGGCCTAGCAATATGAAGAACGAGGATGAG
GAAGAAGATGATGTTGATGGCAAGTAA
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protein sequence of NO09G01040.1

>NO09G01040.1-protein ID=NO09G01040.1-protein|Name=NO09G01040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MNTIPPTKKKRATPPYRVVVLLFASTLPLCQGWFPRLCNAPPSSSRPHAS
RRARGLVLCVQGGGGPIGIGWVGDRYSWTENDWELEVTVPVPPETRKEDV
LFKAAATSLKLGLVNSTEMLLGGKLKGRIALDGTYWSLEGFGPERAVKLL
LEKKEGALENNMDWRRVLAEEAATETQYQEAEKFDTQEYVHQMLGPGGVN
MSLVDKEMFGGLAGGVMRNVSRDTLREFVEAKVLGDASGLGPSNMKNEDE
EEDDVDGK*
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Synonyms
Publications