NO09G01040.1, NO09G01040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01040.1
Unique NameNO09G01040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length777
Alignment locationchr9:350094..350870 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:350094..350870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G01040.1 vs.
Match: EWM27682.1 (CS-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 319.7 bits (818), Expect = 8.300e-84
Identity = 169/239 (70.71%), Postives = 189/239 (79.08%), Query Frame = 0 
Query:   19 VVLLFASTLPLCQGWFPRLCNAPPSSSRPHAS-RRARGLVLCVQGGGGPIGIGWVGDRYSWTENDWELEVTVPVPPETRKEDVLFKAAATSLKLGLVNSTEMLLGGKLKGRIALDGTYWSLEGFGPERAVKLLLEKKEGALENNMDWRRVLAEEAATETQYQEAEKFDTQEYVHQMLGPGGVNMSLVDKEMFGGLAGGVMRNVSRDTLREFVEAKVLGDASGL----GPSNMKNEDEEE 253
            V + F     +CQGWF   C A P    P+   +R RG V C+QGGGGP G+G V  +YSWTEN+WE+EVTVPVP  TRKEDVLFKAAATS+KLGLVNSTE+LLGGKL GRIALDGTYWSLEG G  RAVKLLLEKK GALENNMDWRRVL+EEAATE +YQEAEKFDTQ Y+HQMLGPGGVNMSLVD+EMFGGLAGGVM NVS++ LRE+VE KVL DA+G+    G S    E  EE
Sbjct:   30 VWISFVFCAGVCQGWF-LCCRARP----PYLMLQRTRGNVHCLQGGGGPGGVGRVAGKYSWTENEWEVEVTVPVPARTRKEDVLFKAAATSVKLGLVNSTELLLGGKLMGRIALDGTYWSLEGEGNARAVKLLLEKKLGALENNMDWRRVLSEEAATEVEYQEAEKFDTQAYIHQMLGPGGVNMSLVDREMFGGLAGGVMANVSQEALREYVEGKVLDDATGMASQGGRSGGGGEQHEE 263
The following BLAST results are available for this feature:
BLAST of NO09G01040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27682.18.300e-8470.71CS-like domain protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01040NO09G01040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01040.1NO09G01040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01040.1.cds1NO09G01040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01040.1 ID=NO09G01040.1|Name=NO09G01040.1|organism=Nannochloropsis oceanica|type=mRNA|length=777bp
ATGAACACAATCCCGCCAACAAAGAAAAAAAGAGCAACACCCCCTTATCG
TGTCGTCGTGCTCCTCTTTGCGTCAACCCTGCCCCTCTGTCAAGGCTGGT
TTCCTCGTCTCTGCAATGCCCCTCCCTCATCCTCACGACCTCACGCTTCG
CGTCGTGCCCGGGGCCTTGTGCTGTGTGTGCAGGGAGGGGGCGGTCCCAT
AGGGATAGGATGGGTTGGCGACCGATATTCGTGGACGGAGAACGATTGGG
AACTGGAAGTCACGGTGCCCGTCCCACCGGAAACGCGCAAGGAGGATGTG
CTGTTCAAAGCGGCAGCCACGAGTCTCAAGCTGGGGTTGGTGAATAGCAC
AGAGATGTTGTTGGGTGGAAAGCTCAAGGGGCGGATTGCCTTGGACGGCA
CCTATTGGAGCTTGGAAGGCTTTGGTCCCGAGCGGGCAGTGAAGCTGCTA
CTAGAAAAGAAAGAGGGTGCCTTGGAAAATAATATGGACTGGCGGCGAGT
CTTGGCGGAGGAAGCCGCAACAGAGACTCAGTACCAGGAGGCAGAGAAGT
TCGACACGCAGGAATATGTACACCAGATGTTGGGACCTGGGGGTGTGAAT
ATGAGTTTAGTGGACAAGGAGATGTTTGGAGGGTTGGCGGGGGGGGTGAT
GCGGAATGTGAGTAGAGACACCCTCAGGGAGTTTGTGGAGGCCAAGGTTT
TGGGTGATGCTTCGGGGCTAGGGCCTAGCAATATGAAGAACGAGGATGAG
GAAGAAGATGATGTTGATGGCAAGTAA
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protein sequence of NO09G01040.1

>NO09G01040.1-protein ID=NO09G01040.1-protein|Name=NO09G01040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MNTIPPTKKKRATPPYRVVVLLFASTLPLCQGWFPRLCNAPPSSSRPHAS
RRARGLVLCVQGGGGPIGIGWVGDRYSWTENDWELEVTVPVPPETRKEDV
LFKAAATSLKLGLVNSTEMLLGGKLKGRIALDGTYWSLEGFGPERAVKLL
LEKKEGALENNMDWRRVLAEEAATETQYQEAEKFDTQEYVHQMLGPGGVN
MSLVDKEMFGGLAGGVMRNVSRDTLREFVEAKVLGDASGLGPSNMKNEDE
EEDDVDGK*
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mRNA from alignment at chr9:350094..350870-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01040.1 ID=NO09G01040.1|Name=NO09G01040.1|organism=Nannochloropsis oceanica|type=mRNA|length=777bp|location=Sequence derived from alignment at chr9:350094..350870- (Nannochloropsis oceanica)
ATGAACACAATCCCGCCAACAAAGAAAAAAAGAGCAACACCCCCTTATCG
TGTCGTCGTGCTCCTCTTTGCGTCAACCCTGCCCCTCTGTCAAGGCTGGT
TTCCTCGTCTCTGCAATGCCCCTCCCTCATCCTCACGACCTCACGCTTCG
CGTCGTGCCCGGGGCCTTGTGCTGTGTGTGCAGGGAGGGGGCGGTCCCAT
AGGGATAGGATGGGTTGGCGACCGATATTCGTGGACGGAGAACGATTGGG
AACTGGAAGTCACGGTGCCCGTCCCACCGGAAACGCGCAAGGAGGATGTG
CTGTTCAAAGCGGCAGCCACGAGTCTCAAGCTGGGGTTGGTGAATAGCAC
AGAGATGTTGTTGGGTGGAAAGCTCAAGGGGCGGATTGCCTTGGACGGCA
CCTATTGGAGCTTGGAAGGCTTTGGTCCCGAGCGGGCAGTGAAGCTGCTA
CTAGAAAAGAAAGAGGGTGCCTTGGAAAATAATATGGACTGGCGGCGAGT
CTTGGCGGAGGAAGCCGCAACAGAGACTCAGTACCAGGAGGCAGAGAAGT
TCGACACGCAGGAATATGTACACCAGATGTTGGGACCTGGGGGTGTGAAT
ATGAGTTTAGTGGACAAGGAGATGTTTGGAGGGTTGGCGGGGGGGGTGAT
GCGGAATGTGAGTAGAGACACCCTCAGGGAGTTTGTGGAGGCCAAGGTTT
TGGGTGATGCTTCGGGGCTAGGGCCTAGCAATATGAAGAACGAGGATGAG
GAAGAAGATGATGTTGATGGCAAGTAA
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Coding sequence (CDS) from alignment at chr9:350094..350870-

>NO09G01040.1 ID=NO09G01040.1|Name=NO09G01040.1|organism=Nannochloropsis oceanica|type=CDS|length=777bp|location=Sequence derived from alignment at chr9:350094..350870- (Nannochloropsis oceanica)
ATGAACACAATCCCGCCAACAAAGAAAAAAAGAGCAACACCCCCTTATCG
TGTCGTCGTGCTCCTCTTTGCGTCAACCCTGCCCCTCTGTCAAGGCTGGT
TTCCTCGTCTCTGCAATGCCCCTCCCTCATCCTCACGACCTCACGCTTCG
CGTCGTGCCCGGGGCCTTGTGCTGTGTGTGCAGGGAGGGGGCGGTCCCAT
AGGGATAGGATGGGTTGGCGACCGATATTCGTGGACGGAGAACGATTGGG
AACTGGAAGTCACGGTGCCCGTCCCACCGGAAACGCGCAAGGAGGATGTG
CTGTTCAAAGCGGCAGCCACGAGTCTCAAGCTGGGGTTGGTGAATAGCAC
AGAGATGTTGTTGGGTGGAAAGCTCAAGGGGCGGATTGCCTTGGACGGCA
CCTATTGGAGCTTGGAAGGCTTTGGTCCCGAGCGGGCAGTGAAGCTGCTA
CTAGAAAAGAAAGAGGGTGCCTTGGAAAATAATATGGACTGGCGGCGAGT
CTTGGCGGAGGAAGCCGCAACAGAGACTCAGTACCAGGAGGCAGAGAAGT
TCGACACGCAGGAATATGTACACCAGATGTTGGGACCTGGGGGTGTGAAT
ATGAGTTTAGTGGACAAGGAGATGTTTGGAGGGTTGGCGGGGGGGGTGAT
GCGGAATGTGAGTAGAGACACCCTCAGGGAGTTTGTGGAGGCCAAGGTTT
TGGGTGATGCTTCGGGGCTAGGGCCTAGCAATATGAAGAACGAGGATGAG
GAAGAAGATGATGTTGATGGCAAGTAA
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Synonyms
Publications