NO09G00970, NO09G00970 (gene) Nannochloropsis oceanica

Overview
NameNO09G00970
Unique NameNO09G00970
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length984
Alignment locationchr9:330242..331225 -

Link to JBrowse

Properties
Property NameValue
DescriptionTrafficking protein particle complex subunit 3
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:330242..331225 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0048193Golgi vesicle transport
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0030008TRAPP complex
GO:0005794Golgi apparatus
GO:0005783endoplasmic reticulum
Vocabulary: INTERPRO
TermDefinition
IPR024096NO_sig/Golgi_transp_ligand-bd
IPR016721TRAPP_I_complex_Bet3
IPR007194TRAPP_component
Homology
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BLAST of NO09G00970 vs. NCBI_GenBank
Match: EWM27698.1 (trafficking protein particle complex subunit 3 [Nannochloropsis gaditana])

HSP 1 Score: 347.4 bits (890), Expect = 2.800e-92
Identity = 172/192 (89.58%), Postives = 184/192 (95.83%), Query Frame = 0 
Query:    1 MSSASSRSAATRAGDQAWAKMSKMNAELFNLTYGAMIMQLIRDYEDVQDVNQQLEKMGYNIGQKLIDEFLAKSGVGNCGNIREVAEAVAKVGFKMFLGVVVEVTNWNNEGTAFSLQVYDNPLADYVELPPQYSGLVYSNLLCGVIRGALEMIKYRVECRFVKDGLKGDEVNEIRVELKQILEESFGEEYNEG 193
            MSS+SSRSAATRAGDQAW KMSKMNAELFNLTYGAM+MQLIRDYEDVQ VNQQLE MGY+IGQKL+DEFLAKSGVGNC N REVAE +AKVGFKMFLGVVVEVT WN EGTAFSLQVYDNPLAD+VELPPQYSGLVYSN+LCGVIRGALEMIKY+VECRFVKDGLKGDEVNEIRVEL+Q+++ESFGEEYNEG
Sbjct:    1 MSSSSSRSAATRAGDQAWTKMSKMNAELFNLTYGAMVMQLIRDYEDVQAVNQQLETMGYSIGQKLVDEFLAKSGVGNCANFREVAETLAKVGFKMFLGVVVEVTAWNAEGTAFSLQVYDNPLADFVELPPQYSGLVYSNILCGVIRGALEMIKYQVECRFVKDGLKGDEVNEIRVELRQMVDESFGEEYNEG 192
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BLAST of NO09G00970 vs. NCBI_GenBank
Match: CBN74981.1 (transport protein particle (TRAPP) component Bet3, putative [Ectocarpus siliculosus])

HSP 1 Score: 259.6 bits (662), Expect = 7.700e-66
Identity = 125/190 (65.79%), Postives = 159/190 (83.68%), Query Frame = 0 
Query:    4 ASSRSAATRAGDQAWAKMSKMNAELFNLTYGAMIMQLIRDYEDVQDVNQQLEKMGYNIGQKLIDEFLAKSGVGN-CGNIREVAEAVAKVGFKMFLGVVVEVTNWNNEGTAFSLQVYDNPLADYVELPPQYSGLVYSNLLCGVIRGALEMIKYRVECRFVKDGLKGDEVNEIRVELKQILEESFGEEYNEG 193
            A+S  +  R G+QAW K+SK+NAELF LTYGAM+MQLI+D+EDV  VN+QLE MGYNIG +LIDEFLAK+GV   C +++E A+ VAKV FKMFLGV  +V++WN +GTAFSL +YDNPL ++VELPPQYSGL+YSNLLCGVIRGALEM++ +V CR V+D L+GD+VNEIRVELK+++E+   E+Y EG
Sbjct:    2 ATSSKSHQRTGEQAWGKISKVNAELFTLTYGAMVMQLIQDFEDVGAVNKQLESMGYNIGVRLIDEFLAKAGVSTPCTDLKETADVVAKVAFKMFLGVTADVSSWNGDGTAFSLLLYDNPLIEFVELPPQYSGLLYSNLLCGVIRGALEMVQMKVSCRCVRDVLRGDDVNEIRVELKEMMEDVMDEDYKEG 191
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BLAST of NO09G00970 vs. NCBI_GenBank
Match: ETI45758.1 (hypothetical protein F443_09757 [Phytophthora parasitica P1569] >ETK85706.1 hypothetical protein L915_09562 [Phytophthora parasitica] >ETL39136.1 hypothetical protein L916_09463 [Phytophthora parasitica] >ETM45552.1 hypothetical protein L914_09432 [Phytophthora parasitica] >ETO74400.1 hypothetical protein F444_09854 [Phytophthora parasitica P1976] >ETP15579.1 hypothetical protein F441_09696 [Phytophthora parasitica CJ01A1] >ETP43645.1 hypothetical protein F442_09660 [Phytophthora parasitica P10297])

HSP 1 Score: 247.3 bits (630), Expect = 3.900e-62
Identity = 118/181 (65.19%), Postives = 150/181 (82.87%), Query Frame = 0 
Query:   12 RAGDQAWAKMSKMNAELFNLTYGAMIMQLIRDYEDVQDVNQQLEKMGYNIGQKLIDEFLAKSGVGNCGNIREVAEAVAKVGFKMFLGVVVEVTNWNNEGTAFSLQVYDNPLADYVELPPQ-YSGLVYSNLLCGVIRGALEMIKYRVECRFVKDGLKGDEVNEIRVELKQILEESFGEEYNE 192
            R GD AW+KM K+N ELF LTYG+++ QLI+D+ED++ VNQQL+KMGYNIG +L+DEFLAKSGV NC + ++ AE VAKV FKMFLG+ VEV+ WN EGTA SL +YDNPL ++VELPP  Y  L YSN+LCGV+RGALEM++ RVE +FVKD L+GDEV+EIR+ELK ++EE+ G+EY E
Sbjct:    9 RLGDTAWSKMPKVNGELFALTYGSLVTQLIKDFEDLKVVNQQLDKMGYNIGVRLVDEFLAKSGVSNCQDFKDTAEVVAKVAFKMFLGINVEVSQWNTEGTACSLLIYDNPLTEFVELPPSAYGVLWYSNVLCGVLRGALEMVQMRVEAQFVKDVLQGDEVSEIRLELKGMIEEAMGDEYKE 189
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BLAST of NO09G00970 vs. NCBI_GenBank
Match: ETL92247.1 (hypothetical protein L917_09397 [Phytophthora parasitica])

HSP 1 Score: 247.3 bits (630), Expect = 3.900e-62
Identity = 118/181 (65.19%), Postives = 150/181 (82.87%), Query Frame = 0 
Query:   12 RAGDQAWAKMSKMNAELFNLTYGAMIMQLIRDYEDVQDVNQQLEKMGYNIGQKLIDEFLAKSGVGNCGNIREVAEAVAKVGFKMFLGVVVEVTNWNNEGTAFSLQVYDNPLADYVELPPQ-YSGLVYSNLLCGVIRGALEMIKYRVECRFVKDGLKGDEVNEIRVELKQILEESFGEEYNE 192
            R GD AW+KM K+N ELF LTYG+++ QLI+D+ED++ VNQQL+KMGYNIG +L+DEFLAKSGV NC + ++ AE VAKV FKMFLG+ VEV+ WN EGTA SL +YDNPL ++VELPP  Y  L YSN+LCGV+RGALEM++ RVE +FVKD L+GDEV+EIR+ELK ++EE+ G+EY E
Sbjct:    9 RLGDTAWSKMPKVNGELFALTYGSLVTQLIKDFEDLKVVNQQLDKMGYNIGVRLVDEFLAKSGVSNCQDFKDTAEVVAKVAFKMFLGINVEVSQWNTEGTACSLLIYDNPLTEFVELPPSAYGVLWYSNVLCGVLRGALEMVQMRVEAQFVKDVLQGDEVSEIRLELKGMIEETMGDEYKE 189
[Close]
BLAST of NO09G00970 vs. NCBI_GenBank
Match: XP_002899641.1 (trafficking protein particle complex subunit 3 [Phytophthora infestans T30-4] >EEY62001.1 trafficking protein particle complex subunit 3 [Phytophthora infestans T30-4])

HSP 1 Score: 246.9 bits (629), Expect = 5.100e-62
Identity = 118/181 (65.19%), Postives = 149/181 (82.32%), Query Frame = 0 
Query:   12 RAGDQAWAKMSKMNAELFNLTYGAMIMQLIRDYEDVQDVNQQLEKMGYNIGQKLIDEFLAKSGVGNCGNIREVAEAVAKVGFKMFLGVVVEVTNWNNEGTAFSLQVYDNPLADYVELPPQ-YSGLVYSNLLCGVIRGALEMIKYRVECRFVKDGLKGDEVNEIRVELKQILEESFGEEYNE 192
            R GD AW+KM K+N ELF LTYG+++ QLI+D+ED++ VNQQL+KMGYNIG +L+DEFLAKSGV NC + +E +E VAKV FKMFLG+ VEV  WN EGTA SL +YDNPL ++VELPP  Y  L YSN+LCGV+RGALEM++ RVE +FVKD L+GDEV+EIR+ELK ++EE+ G+EY E
Sbjct:    9 RLGDTAWSKMPKVNGELFALTYGSLVTQLIKDFEDLKVVNQQLDKMGYNIGVRLVDEFLAKSGVSNCQDFKETSEVVAKVAFKMFLGINVEVAQWNTEGTACSLLIYDNPLTEFVELPPSAYGVLWYSNVLCGVLRGALEMVQMRVEAQFVKDVLQGDEVSEIRLELKGMIEEAMGDEYKE 189
[Close]
BLAST of NO09G00970 vs. NCBI_GenBank
Match: XP_024576950.1 (Transport protein particle (TRAPP) complex subunit [Plasmopara halstedii] >CEG40581.1 Transport protein particle (TRAPP) complex subunit [Plasmopara halstedii])

HSP 1 Score: 242.7 bits (618), Expect = 9.700e-61
Identity = 116/181 (64.09%), Postives = 149/181 (82.32%), Query Frame = 0 
Query:   12 RAGDQAWAKMSKMNAELFNLTYGAMIMQLIRDYEDVQDVNQQLEKMGYNIGQKLIDEFLAKSGVGNCGNIREVAEAVAKVGFKMFLGVVVEVTNWNNEGTAFSLQVYDNPLADYVELPPQ-YSGLVYSNLLCGVIRGALEMIKYRVECRFVKDGLKGDEVNEIRVELKQILEESFGEEYNE 192
            R GD AW KMSK+N ELF LTYGA++ QLI+D+ED++ VN+QL+KMGYNIG +L+DEFLAKSGV NC + R+ +E VAKV FKMFLG+ VEV+ WN  GTA SL ++DNPL ++VELPP  Y  L YSN+LCGV+RGALEM++ RV+ +FVKD L+GDEV+EIR+ELK ++EE+ G+EY E
Sbjct:    9 RLGDAAWNKMSKVNGELFALTYGALVTQLIKDFEDLKIVNEQLDKMGYNIGVRLVDEFLAKSGVNNCQDFRDTSEVVAKVAFKMFLGINVEVSQWNTTGTACSLLIHDNPLTEFVELPPSAYGVLWYSNVLCGVLRGALEMVQMRVDAQFVKDVLQGDEVSEIRLELKGMIEEAMGDEYKE 189
[Close]
BLAST of NO09G00970 vs. NCBI_GenBank
Match: OWZ23650.1 (hypothetical protein PHMEG_0001456 [Phytophthora megakarya])

HSP 1 Score: 238.0 bits (606), Expect = 2.400e-59
Identity = 114/178 (64.04%), Postives = 146/178 (82.02%), Query Frame = 0 
Query:   12 RAGDQAWAKMSKMNAELFNLTYGAMIMQLIRDYEDVQDVNQQLEKMGYNIGQKLIDEFLAKSGVGNCGNIREVAEAVAKVGFKMFLGVVVEVTNWNNEGTAFSLQVYDNPLADYVELPPQ-YSGLVYSNLLCGVIRGALEMIKYRVECRFVKDGLKGDEVNEIRVELKQILEESFGEE 189
            R GD AW+KM K+N ELF LTYGA++ QLI+D+ED++ VNQQL+KMGYNIG +L+DEFLAKSGV NC + +E AE VAKV FKMFLG+ V+V+ WN E  A SL +YDNPL ++VELPP  Y  L YSN+LCGV+RGALEM++ RVE +FVKD L+GDEV+EIR+ELK ++EE+ G++
Sbjct: 1101 RVGDAAWSKMPKVNGELFALTYGALVTQLIKDFEDLKVVNQQLDKMGYNIGVRLVDEFLAKSGVANCQDFKETAEVVAKVAFKMFLGINVDVSQWNAEANACSLLIYDNPLTEFVELPPSAYGVLWYSNVLCGVLRGALEMVQMRVEAQFVKDVLQGDEVSEIRLELKGMIEEAMGDD 1278
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BLAST of NO09G00970 vs. NCBI_GenBank
Match: XP_009038856.1 (hypothetical protein AURANDRAFT_59205 [Aureococcus anophagefferens] >XP_009043238.1 hypothetical protein AURANDRAFT_35563 [Aureococcus anophagefferens] >EGB02063.1 hypothetical protein AURANDRAFT_35563 [Aureococcus anophagefferens] >EGB06275.1 hypothetical protein AURANDRAFT_59205 [Aureococcus anophagefferens])

HSP 1 Score: 229.6 bits (584), Expect = 8.500e-57
Identity = 114/190 (60.00%), Postives = 149/190 (78.42%), Query Frame = 0 
Query:    3 SASSRSAATRAGDQAWAKMSKMNAELFNLTYGAMIMQLIRDYEDVQDVNQQLEKMGYNIGQKLIDEFLAKSGVGNCGNIREVAEAVAKVGFKMFLGVVVEVTNWNNEGTAFSLQVYDNPLADYVELPPQYSGLVYSNLLCGVIRGALEMIKYRVECRFVKDGLKGDEVNEIRVELKQILEESFGEEYNEG 193
            SASS+S A R G+Q WAKM K+NAE F LTYG M++QL++D+EDV++VN++LE MG+ IG +LIDEFLAKSG+ NC +  E  + +AKV FKMFLGV V+V NWN + TA SL +YDNPL D+VE+PP  + L+YSN+LCGVIRGALEMI  +V+  FV+D L+GD+VNEIRVELK+ +     ++Y EG
Sbjct:    2 SASSKSHA-RIGEQVWAKMPKINAEFFCLTYGTMVVQLMKDFEDVREVNKKLESMGHGIGMRLIDEFLAKSGINNCHDFSETCDVIAKVAFKMFLGVGVDVANWNADKTACSLLLYDNPLNDFVEIPPN-TNLLYSNILCGVIRGALEMIMMKVDAFFVRDVLRGDDVNEIRVELKERMVSEMDDQYKEG 189
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BLAST of NO09G00970 vs. NCBI_GenBank
Match: XP_009526637.1 (hypothetical protein PHYSODRAFT_285951 [Phytophthora sojae] >EGZ17579.1 hypothetical protein PHYSODRAFT_285951 [Phytophthora sojae])

HSP 1 Score: 229.2 bits (583), Expect = 1.100e-56
Identity = 110/172 (63.95%), Postives = 142/172 (82.56%), Query Frame = 0 
Query:   21 MSKMNAELFNLTYGAMIMQLIRDYEDVQDVNQQLEKMGYNIGQKLIDEFLAKSGVGNCGNIREVAEAVAKVGFKMFLGVVVEVTNWNNEGTAFSLQVYDNPLADYVELPPQ-YSGLVYSNLLCGVIRGALEMIKYRVECRFVKDGLKGDEVNEIRVELKQILEESFGEEYNE 192
            M K+N ELF LTYG+++ QLI+D+ED++ VNQQL+KMGYNIG +L+DEFLAKSGV +C + R+ AE VAKV FKMFLG+ VEV+ WN EG A SL +Y+NPL ++VELPP  Y  L YSN+LCGV+RGALEM++ RVE +FVKD L+GDEV+EIR+ELK ++EE+ G+EY E
Sbjct:    1 MPKVNGELFALTYGSLVTQLIKDFEDLKVVNQQLDKMGYNIGVRLVDEFLAKSGVASCQDFRDTAEVVAKVAFKMFLGINVEVSQWNAEGNACSLLIYENPLTEFVELPPSAYGVLWYSNVLCGVLRGALEMVQMRVEAQFVKDVLQGDEVSEIRLELKGMIEEAMGDEYKE 172
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BLAST of NO09G00970 vs. NCBI_GenBank
Match: XP_008604589.1 (hypothetical protein SDRG_00865 [Saprolegnia diclina VS20] >XP_012197028.1 hypothetical protein SPRG_03057 [Saprolegnia parasitica CBS 223.65] >EQC42020.1 hypothetical protein SDRG_00865 [Saprolegnia diclina VS20] >KDO32583.1 hypothetical protein SPRG_03057 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 223.4 bits (568), Expect = 6.100e-55
Identity = 109/181 (60.22%), Postives = 143/181 (79.01%), Query Frame = 0 
Query:   12 RAGDQAWAKMSKMNAELFNLTYGAMIMQLIRDYEDVQDVNQQLEKMGYNIGQKLIDEFLAKSGVGNCGNIREVAEAVAKVGFKMFLGVVVEVTNWNNEGTAFSLQVYDNPLADYVELPPQYSG-LVYSNLLCGVIRGALEMIKYRVECRFVKDGLKGDEVNEIRVELKQILEESFGEEYNE 192
            RAG+ AWAKM K+NAE F LTYGA++ QLI+D+ED+++VN QLEKMGYNIG +LIDEFLAKSGV  C + +E A+ +AKV FKMFLG+ V+V   +      SL +Y+NP +++VELPPQ  G L YSN+LCGV+RGALEM++ RVE +F KD L+GD+V EIR+ELK ++EE+ G+EY E
Sbjct:    5 RAGEAAWAKMPKVNAEFFALTYGAVVTQLIKDFEDLKEVNSQLEKMGYNIGIRLIDEFLAKSGVAACADFKETADVIAKVAFKMFLGINVDVAPTDMPNVC-SLVLYENPFSEFVELPPQAHGVLAYSNILCGVLRGALEMVQMRVEAKFTKDTLQGDDVTEIRLELKGMIEEAMGDEYKE 184
The following BLAST results are available for this feature:
BLAST of NO09G00970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27698.12.800e-9289.58trafficking protein particle complex subunit 3 [Na... [more]
CBN74981.17.700e-6665.79transport protein particle (TRAPP) component Bet3,... [more]
ETI45758.13.900e-6265.19hypothetical protein F443_09757 [Phytophthora para... [more]
ETL92247.13.900e-6265.19hypothetical protein L917_09397 [Phytophthora para... [more]
XP_002899641.15.100e-6265.19trafficking protein particle complex subunit 3 [Ph... [more]
XP_024576950.19.700e-6164.09Transport protein particle (TRAPP) complex subunit... [more]
OWZ23650.12.400e-5964.04hypothetical protein PHMEG_0001456 [Phytophthora m... [more]
XP_009038856.18.500e-5760.00hypothetical protein AURANDRAFT_59205 [Aureococcus... [more]
XP_009526637.11.100e-5663.95hypothetical protein PHYSODRAFT_285951 [Phytophtho... [more]
XP_008604589.16.100e-5560.22hypothetical protein SDRG_00865 [Saprolegnia dicli... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010573NSK010573Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G00970.1NO09G00970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|555265gene_4459Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100104g12gene2869Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G00970.1NO09G00970.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G00970 ID=NO09G00970|Name=NO09G00970|organism=Nannochloropsis oceanica|type=gene|length=984bp
ATGTCGTCGGCCAGTAGCCGCTCTGCGGCCACGCGCGCGGGGGACCAAGC
CTGGGCCAAGATGAGCAAGATGgtatgtttgcaaggggaaagtggtcact
gcttttgcccttgtctcctctgccctctgagcctcctcttcatgccgacc
tccccacctccctcccttcacagAACGCCGAATTGTTCAACCTCACATAT
GGAGCCATGATCATGCAGCTGATTCGGGACTACGAGGATGTACAAGATGT
GAACCAACAGCTGGAAAAAATgtacgtgtgtcatggatagtagtttgcgc
gagtgggctggcttggatatacttttctttcctcctttcctcacggtctc
gtgtaagcgacataagtttgtaaatgtgactttatattgcatgggtcttg
tctttatgtgtgtacatacctttttcggtcctgtacccctcttccgtttt
ttcttcggccagttttggcgccaacgctccgccaacgattttctttcgac
tatccctttggctcgaccaaccatggacagcccatgttctcactttgggt
tatcatatactttttgaacaagGGGCTACAACATTGGACAAAAGCTCATC
GACGAATTTCTCGCCAAGTCCGGCGTGGGCAACTGTGGGAACATCCGAGA
GGTCGCCGAAGCGGTGGCCAAGGTGGGATTCAAGATGTTCTTGGGCGTGG
TAGTGGAAGTAACAAATTGGAATAACGAGGGCACGGCGTTCAGTTTGCAG
GTGTATGACAATCCGCTCGCGGATTATGTCGAGCTTCCGCCGCAGTACTC
TGGGTTGGTGTACTCGAACTTGTTGTGTGGGGTGATAAGAGGGGCGTTGG
AAATGATCAAATATCGGGTGGAGTGTCGGTTCGTGAAGGACGGGCTGAAG
GGAGATGAGGTGAATGAGATCCGCGTGGAGTTGAAGCAGATATTGGAGGA
GAGCTTTGGGGAGGAGTATAATGAGGGGGGCTGA
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protein sequence of NO09G00970.1

>NO09G00970.1-protein ID=NO09G00970.1-protein|Name=NO09G00970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=194bp
MSSASSRSAATRAGDQAWAKMSKMNAELFNLTYGAMIMQLIRDYEDVQDV
NQQLEKMGYNIGQKLIDEFLAKSGVGNCGNIREVAEAVAKVGFKMFLGVV
VEVTNWNNEGTAFSLQVYDNPLADYVELPPQYSGLVYSNLLCGVIRGALE
MIKYRVECRFVKDGLKGDEVNEIRVELKQILEESFGEEYNEGG*
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Synonyms
Publications