NO09G00970.1, NO09G00970.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00970.1
Unique NameNO09G00970.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length582
Alignment locationchr9:330242..331225 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:330242..331225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G00970.1 vs.
Match: EWM27698.1 (trafficking protein particle complex subunit 3 [Nannochloropsis gaditana])

HSP 1 Score: 347.4 bits (890), Expect = 2.800e-92
Identity = 172/192 (89.58%), Postives = 184/192 (95.83%), Query Frame = 0 
Query:    1 MSSASSRSAATRAGDQAWAKMSKMNAELFNLTYGAMIMQLIRDYEDVQDVNQQLEKMGYNIGQKLIDEFLAKSGVGNCGNIREVAEAVAKVGFKMFLGVVVEVTNWNNEGTAFSLQVYDNPLADYVELPPQYSGLVYSNLLCGVIRGALEMIKYRVECRFVKDGLKGDEVNEIRVELKQILEESFGEEYNEG 193
            MSS+SSRSAATRAGDQAW KMSKMNAELFNLTYGAM+MQLIRDYEDVQ VNQQLE MGY+IGQKL+DEFLAKSGVGNC N REVAE +AKVGFKMFLGVVVEVT WN EGTAFSLQVYDNPLAD+VELPPQYSGLVYSN+LCGVIRGALEMIKY+VECRFVKDGLKGDEVNEIRVEL+Q+++ESFGEEYNEG
Sbjct:    1 MSSSSSRSAATRAGDQAWTKMSKMNAELFNLTYGAMVMQLIRDYEDVQAVNQQLETMGYSIGQKLVDEFLAKSGVGNCANFREVAETLAKVGFKMFLGVVVEVTAWNAEGTAFSLQVYDNPLADFVELPPQYSGLVYSNILCGVIRGALEMIKYQVECRFVKDGLKGDEVNEIRVELRQMVDESFGEEYNEG 192
The following BLAST results are available for this feature:
BLAST of NO09G00970.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27698.12.800e-9289.58trafficking protein particle complex subunit 3 [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00970NO09G00970Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00970.1NO09G00970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00970.1.cds1NO09G00970.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00970.1.cds2NO09G00970.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00970.1.cds3NO09G00970.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00970.1 ID=NO09G00970.1|Name=NO09G00970.1|organism=Nannochloropsis oceanica|type=mRNA|length=582bp
ATGTCGTCGGCCAGTAGCCGCTCTGCGGCCACGCGCGCGGGGGACCAAGC
CTGGGCCAAGATGAGCAAGATGAACGCCGAATTGTTCAACCTCACATATG
GAGCCATGATCATGCAGCTGATTCGGGACTACGAGGATGTACAAGATGTG
AACCAACAGCTGGAAAAAATGGGCTACAACATTGGACAAAAGCTCATCGA
CGAATTTCTCGCCAAGTCCGGCGTGGGCAACTGTGGGAACATCCGAGAGG
TCGCCGAAGCGGTGGCCAAGGTGGGATTCAAGATGTTCTTGGGCGTGGTA
GTGGAAGTAACAAATTGGAATAACGAGGGCACGGCGTTCAGTTTGCAGGT
GTATGACAATCCGCTCGCGGATTATGTCGAGCTTCCGCCGCAGTACTCTG
GGTTGGTGTACTCGAACTTGTTGTGTGGGGTGATAAGAGGGGCGTTGGAA
ATGATCAAATATCGGGTGGAGTGTCGGTTCGTGAAGGACGGGCTGAAGGG
AGATGAGGTGAATGAGATCCGCGTGGAGTTGAAGCAGATATTGGAGGAGA
GCTTTGGGGAGGAGTATAATGAGGGGGGCTGA
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protein sequence of NO09G00970.1

>NO09G00970.1-protein ID=NO09G00970.1-protein|Name=NO09G00970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=194bp
MSSASSRSAATRAGDQAWAKMSKMNAELFNLTYGAMIMQLIRDYEDVQDV
NQQLEKMGYNIGQKLIDEFLAKSGVGNCGNIREVAEAVAKVGFKMFLGVV
VEVTNWNNEGTAFSLQVYDNPLADYVELPPQYSGLVYSNLLCGVIRGALE
MIKYRVECRFVKDGLKGDEVNEIRVELKQILEESFGEEYNEGG*
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mRNA from alignment at chr9:330242..331225-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00970.1 ID=NO09G00970.1|Name=NO09G00970.1|organism=Nannochloropsis oceanica|type=mRNA|length=984bp|location=Sequence derived from alignment at chr9:330242..331225- (Nannochloropsis oceanica)
ATGTCGTCGGCCAGTAGCCGCTCTGCGGCCACGCGCGCGGGGGACCAAGC
CTGGGCCAAGATGAGCAAGATGGTATGTTTGCAAGGGGAAAGTGGTCACT
GCTTTTGCCCTTGTCTCCTCTGCCCTCTGAGCCTCCTCTTCATGCCGACC
TCCCCACCTCCCTCCCTTCACAGAACGCCGAATTGTTCAACCTCACATAT
GGAGCCATGATCATGCAGCTGATTCGGGACTACGAGGATGTACAAGATGT
GAACCAACAGCTGGAAAAAATGTACGTGTGTCATGGATAGTAGTTTGCGC
GAGTGGGCTGGCTTGGATATACTTTTCTTTCCTCCTTTCCTCACGGTCTC
GTGTAAGCGACATAAGTTTGTAAATGTGACTTTATATTGCATGGGTCTTG
TCTTTATGTGTGTACATACCTTTTTCGGTCCTGTACCCCTCTTCCGTTTT
TTCTTCGGCCAGTTTTGGCGCCAACGCTCCGCCAACGATTTTCTTTCGAC
TATCCCTTTGGCTCGACCAACCATGGACAGCCCATGTTCTCACTTTGGGT
TATCATATACTTTTTGAACAAGGGGCTACAACATTGGACAAAAGCTCATC
GACGAATTTCTCGCCAAGTCCGGCGTGGGCAACTGTGGGAACATCCGAGA
GGTCGCCGAAGCGGTGGCCAAGGTGGGATTCAAGATGTTCTTGGGCGTGG
TAGTGGAAGTAACAAATTGGAATAACGAGGGCACGGCGTTCAGTTTGCAG
GTGTATGACAATCCGCTCGCGGATTATGTCGAGCTTCCGCCGCAGTACTC
TGGGTTGGTGTACTCGAACTTGTTGTGTGGGGTGATAAGAGGGGCGTTGG
AAATGATCAAATATCGGGTGGAGTGTCGGTTCGTGAAGGACGGGCTGAAG
GGAGATGAGGTGAATGAGATCCGCGTGGAGTTGAAGCAGATATTGGAGGA
GAGCTTTGGGGAGGAGTATAATGAGGGGGGCTGA
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Coding sequence (CDS) from alignment at chr9:330242..331225-

>NO09G00970.1 ID=NO09G00970.1|Name=NO09G00970.1|organism=Nannochloropsis oceanica|type=CDS|length=582bp|location=Sequence derived from alignment at chr9:330242..331225- (Nannochloropsis oceanica)
ATGTCGTCGGCCAGTAGCCGCTCTGCGGCCACGCGCGCGGGGGACCAAGC
CTGGGCCAAGATGAGCAAGATGAACGCCGAATTGTTCAACCTCACATATG
GAGCCATGATCATGCAGCTGATTCGGGACTACGAGGATGTACAAGATGTG
AACCAACAGCTGGAAAAAATGGGCTACAACATTGGACAAAAGCTCATCGA
CGAATTTCTCGCCAAGTCCGGCGTGGGCAACTGTGGGAACATCCGAGAGG
TCGCCGAAGCGGTGGCCAAGGTGGGATTCAAGATGTTCTTGGGCGTGGTA
GTGGAAGTAACAAATTGGAATAACGAGGGCACGGCGTTCAGTTTGCAGGT
GTATGACAATCCGCTCGCGGATTATGTCGAGCTTCCGCCGCAGTACTCTG
GGTTGGTGTACTCGAACTTGTTGTGTGGGGTGATAAGAGGGGCGTTGGAA
ATGATCAAATATCGGGTGGAGTGTCGGTTCGTGAAGGACGGGCTGAAGGG
AGATGAGGTGAATGAGATCCGCGTGGAGTTGAAGCAGATATTGGAGGAGA
GCTTTGGGGAGGAGTATAATGAGGGGGGCTGA
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Synonyms
Publications