NO09G00910, NO09G00910 (gene) Nannochloropsis oceanica

Overview
NameNO09G00910
Unique NameNO09G00910
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1520
Alignment locationchr9:316855..318374 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:316855..318374 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO09G00910 vs. NCBI_GenBank
Match: EWM27681.1 (hypothetical protein Naga_100104g6 [Nannochloropsis gaditana])

HSP 1 Score: 129.0 bits (323), Expect = 5.700e-27
Identity = 58/68 (85.29%), Postives = 61/68 (89.71%), Query Frame = 0 
Query:    1 MPNWWNLPFREFVVKEVTRPGFREFAVGAVVVFFGLGLKINAGITDKDRAESAYYQDFIAKKDDGAHG 69
            MPNWWNLPFR+FVVKEV RPGFREFAVGA VVFFGLGLKINAGITDKDR ES YYQDF+A K +G HG
Sbjct:   20 MPNWWNLPFRDFVVKEVMRPGFREFAVGAAVVFFGLGLKINAGITDKDREESPYYQDFLAPKKEGPHG 87
The following BLAST results are available for this feature:
BLAST of NO09G00910 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27681.15.700e-2785.29hypothetical protein Naga_100104g6 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010561NSK010561Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G00910.1NO09G00910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589209gene_4465Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100104g6gene2863Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G00910.1NO09G00910.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G00910 ID=NO09G00910|Name=NO09G00910|organism=Nannochloropsis oceanica|type=gene|length=1520bp
TACGCGCTCAAGATAAAACAACCTATGTATATATGTATATGTATAAATAT
ATGAGACAGAGGGTGATCTGGCCAAGGGAAGCGAAGAAGCGAAGAAGAGC
AAGAGGTTATGGCGGAGCGTGGAGCTTGAGGCATTGGTGAGTCCGTAGCC
TGTCCATGCGATTCTCTATTCGTCCTGTATGAGAGGTGATACCCTTGTGA
ATGGGGGCAGTTATGATGTTAGGCAGGCAACAGCGCGATGCTTATGATGA
TGGGGGTGACTGCGTCTGGCTTCGTTGTTGGACGCTGCGTGGATATGGAG
ATCAAAACTACTTTGTCTTTCAAGCCTTCATTGCGTGACATCGGCGTCCT
TCCACCGCTCCAAGACTTGCACACAAAAAAATAGCATGTAGCGCCACGTG
TTGGTGAGAGACAGGAAAACCGGGTAGGTGCACGTGGGATGGGTGGCCAA
GGGCGGCCACCTCCTCAAAACAAGCCTTGCCTCGCGATGAAGATGCACGC
GCTGCGTGGCTCTTTTCCCCCGCCCCTGCGAAGGACTCCAGGACCGAATG
CACAAACCTATCATCTCCATCACAGTGTCCAGACGTGATTGATGGTCTTT
GGGTGGCTGGCCAGGGCCAAAGCATAGTCTAACGTACCTTTCGTATCGAG
TACTGGCGTGGGTTCTCTTCTTGCGTCGTCTCGACGGGCCATGATCATTC
TCTCCAATGCCCGCACGCATTCTCATACCCACCACCCATCATAAATATCG
ACAGACTCGAACGGTCAGAGAGAGAGAGCCATGCCTAACTGGTGGAATTT
ACCGTTCCGGGAGTTTGTGGTGAAGGAGGTGACCCGCCCGGGCTTCAGGG
AGTTTGCCGTGGGGGCCGTgtgagtagggtagattggagggttggagtgc
aaagggagggtgcccaactgggcctagcatgagtaatagtattgtgttta
ctgtcttgtatgctctattggggtgaattggtagagatttcgtcgttcct
gcggtggggtttggagatggtaccaagcgcccgtacctggagggaagagt
gcatggccgtttcgtatgctttctttgattatcgtgtcggcaccttgctg
tcattgatctcacctttgattttcttcctgtcccacacatatacagCGTG
GTGTTCTTTGGGTTGGGCCTGAAGATCAATGCCGGTATTACAGACAAGGA
CCGGGCAGAAAGCGCCTACTACCAGGACTTTATCGCGAAGAAGGACGATG
GCGCGCACGGGCACCATTAGAGTATGATAGATGCAGGAGAGTAGGGCCAA
GCGGTTTAGTAGAGCAGCAGCGGTGGAGAGAGAGGAAAGGGGACGGATGA
TACGAGAAGAGGAAATTAGGAGGTGAAACCGTCTGTCGTGTGGTTACGCA
TTGTAGCGGAGGGCTCACTGGACAATGTGGTTGAGCAATGCGGGTGGATG
GAATTTGATGTACGTTTGAACAAGAGGTTAAGCGAGCCACAAAAAGAAAA
GACAAAGAGAAGGTAGGGCA
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protein sequence of NO09G00910.1

>NO09G00910.1-protein ID=NO09G00910.1-protein|Name=NO09G00910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=71bp
MPNWWNLPFREFVVKEVTRPGFREFAVGAVVVFFGLGLKINAGITDKDRA
ESAYYQDFIAKKDDGAHGHH*
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Synonyms
Publications