NO09G00910.1, NO09G00910.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00910.1
Unique NameNO09G00910.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1243
Alignment locationchr9:316855..318374 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:316855..318374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G00910.1 vs.
Match: EWM27681.1 (hypothetical protein Naga_100104g6 [Nannochloropsis gaditana])

HSP 1 Score: 129.0 bits (323), Expect = 5.700e-27
Identity = 58/68 (85.29%), Postives = 61/68 (89.71%), Query Frame = 0 
Query:    1 MPNWWNLPFREFVVKEVTRPGFREFAVGAVVVFFGLGLKINAGITDKDRAESAYYQDFIAKKDDGAHG 69
            MPNWWNLPFR+FVVKEV RPGFREFAVGA VVFFGLGLKINAGITDKDR ES YYQDF+A K +G HG
Sbjct:   20 MPNWWNLPFRDFVVKEVMRPGFREFAVGAAVVFFGLGLKINAGITDKDREESPYYQDFLAPKKEGPHG 87
The following BLAST results are available for this feature:
BLAST of NO09G00910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27681.15.700e-2785.29hypothetical protein Naga_100104g6 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00910NO09G00910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00910.1NO09G00910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00910.1.cds1NO09G00910.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00910.1.cds2NO09G00910.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00910.1 ID=NO09G00910.1|Name=NO09G00910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1243bp
TACGCGCTCAAGATAAAACAACCTATGTATATATGTATATGTATAAATAT
ATGAGACAGAGGGTGATCTGGCCAAGGGAAGCGAAGAAGCGAAGAAGAGC
AAGAGGTTATGGCGGAGCGTGGAGCTTGAGGCATTGGTGAGTCCGTAGCC
TGTCCATGCGATTCTCTATTCGTCCTGTATGAGAGGTGATACCCTTGTGA
ATGGGGGCAGTTATGATGTTAGGCAGGCAACAGCGCGATGCTTATGATGA
TGGGGGTGACTGCGTCTGGCTTCGTTGTTGGACGCTGCGTGGATATGGAG
ATCAAAACTACTTTGTCTTTCAAGCCTTCATTGCGTGACATCGGCGTCCT
TCCACCGCTCCAAGACTTGCACACAAAAAAATAGCATGTAGCGCCACGTG
TTGGTGAGAGACAGGAAAACCGGGTAGGTGCACGTGGGATGGGTGGCCAA
GGGCGGCCACCTCCTCAAAACAAGCCTTGCCTCGCGATGAAGATGCACGC
GCTGCGTGGCTCTTTTCCCCCGCCCCTGCGAAGGACTCCAGGACCGAATG
CACAAACCTATCATCTCCATCACAGTGTCCAGACGTGATTGATGGTCTTT
GGGTGGCTGGCCAGGGCCAAAGCATAGTCTAACGTACCTTTCGTATCGAG
TACTGGCGTGGGTTCTCTTCTTGCGTCGTCTCGACGGGCCATGATCATTC
TCTCCAATGCCCGCACGCATTCTCATACCCACCACCCATCATAAATATCG
ACAGACTCGAACGGTCAGAGAGAGAGAGCCATGCCTAACTGGTGGAATTT
ACCGTTCCGGGAGTTTGTGGTGAAGGAGGTGACCCGCCCGGGCTTCAGGG
AGTTTGCCGTGGGGGCCGTCGTGGTGTTCTTTGGGTTGGGCCTGAAGATC
AATGCCGGTATTACAGACAAGGACCGGGCAGAAAGCGCCTACTACCAGGA
CTTTATCGCGAAGAAGGACGATGGCGCGCACGGGCACCATTAGAGTATGA
TAGATGCAGGAGAGTAGGGCCAAGCGGTTTAGTAGAGCAGCAGCGGTGGA
GAGAGAGGAAAGGGGACGGATGATACGAGAAGAGGAAATTAGGAGGTGAA
ACCGTCTGTCGTGTGGTTACGCATTGTAGCGGAGGGCTCACTGGACAATG
TGGTTGAGCAATGCGGGTGGATGGAATTTGATGTACGTTTGAACAAGAGG
TTAAGCGAGCCACAAAAAGAAAAGACAAAGAGAAGGTAGGGCA
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protein sequence of NO09G00910.1

>NO09G00910.1-protein ID=NO09G00910.1-protein|Name=NO09G00910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=71bp
MPNWWNLPFREFVVKEVTRPGFREFAVGAVVVFFGLGLKINAGITDKDRA
ESAYYQDFIAKKDDGAHGHH*
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mRNA from alignment at chr9:316855..318374+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00910.1 ID=NO09G00910.1|Name=NO09G00910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1520bp|location=Sequence derived from alignment at chr9:316855..318374+ (Nannochloropsis oceanica)
TACGCGCTCAAGATAAAACAACCTATGTATATATGTATATGTATAAATAT
ATGAGACAGAGGGTGATCTGGCCAAGGGAAGCGAAGAAGCGAAGAAGAGC
AAGAGGTTATGGCGGAGCGTGGAGCTTGAGGCATTGGTGAGTCCGTAGCC
TGTCCATGCGATTCTCTATTCGTCCTGTATGAGAGGTGATACCCTTGTGA
ATGGGGGCAGTTATGATGTTAGGCAGGCAACAGCGCGATGCTTATGATGA
TGGGGGTGACTGCGTCTGGCTTCGTTGTTGGACGCTGCGTGGATATGGAG
ATCAAAACTACTTTGTCTTTCAAGCCTTCATTGCGTGACATCGGCGTCCT
TCCACCGCTCCAAGACTTGCACACAAAAAAATAGCATGTAGCGCCACGTG
TTGGTGAGAGACAGGAAAACCGGGTAGGTGCACGTGGGATGGGTGGCCAA
GGGCGGCCACCTCCTCAAAACAAGCCTTGCCTCGCGATGAAGATGCACGC
GCTGCGTGGCTCTTTTCCCCCGCCCCTGCGAAGGACTCCAGGACCGAATG
CACAAACCTATCATCTCCATCACAGTGTCCAGACGTGATTGATGGTCTTT
GGGTGGCTGGCCAGGGCCAAAGCATAGTCTAACGTACCTTTCGTATCGAG
TACTGGCGTGGGTTCTCTTCTTGCGTCGTCTCGACGGGCCATGATCATTC
TCTCCAATGCCCGCACGCATTCTCATACCCACCACCCATCATAAATATCG
ACAGACTCGAACGGTCAGAGAGAGAGAGCCATGCCTAACTGGTGGAATTT
ACCGTTCCGGGAGTTTGTGGTGAAGGAGGTGACCCGCCCGGGCTTCAGGG
AGTTTGCCGTGGGGGCCGTGTGAGTAGGGTAGATTGGAGGGTTGGAGTGC
AAAGGGAGGGTGCCCAACTGGGCCTAGCATGAGTAATAGTATTGTGTTTA
CTGTCTTGTATGCTCTATTGGGGTGAATTGGTAGAGATTTCGTCGTTCCT
GCGGTGGGGTTTGGAGATGGTACCAAGCGCCCGTACCTGGAGGGAAGAGT
GCATGGCCGTTTCGTATGCTTTCTTTGATTATCGTGTCGGCACCTTGCTG
TCATTGATCTCACCTTTGATTTTCTTCCTGTCCCACACATATACAGCGTG
GTGTTCTTTGGGTTGGGCCTGAAGATCAATGCCGGTATTACAGACAAGGA
CCGGGCAGAAAGCGCCTACTACCAGGACTTTATCGCGAAGAAGGACGATG
GCGCGCACGGGCACCATTAGAGTATGATAGATGCAGGAGAGTAGGGCCAA
GCGGTTTAGTAGAGCAGCAGCGGTGGAGAGAGAGGAAAGGGGACGGATGA
TACGAGAAGAGGAAATTAGGAGGTGAAACCGTCTGTCGTGTGGTTACGCA
TTGTAGCGGAGGGCTCACTGGACAATGTGGTTGAGCAATGCGGGTGGATG
GAATTTGATGTACGTTTGAACAAGAGGTTAAGCGAGCCACAAAAAGAAAA
GACAAAGAGAAGGTAGGGCA
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Coding sequence (CDS) from alignment at chr9:316855..318374+

>NO09G00910.1 ID=NO09G00910.1|Name=NO09G00910.1|organism=Nannochloropsis oceanica|type=CDS|length=213bp|location=Sequence derived from alignment at chr9:316855..318374+ (Nannochloropsis oceanica)
ATGCCTAACTGGTGGAATTTACCGTTCCGGGAGTTTGTGGTGAAGGAGGT
GACCCGCCCGGGCTTCAGGGAGTTTGCCGTGGGGGCCGTCGTGGTGTTCT
TTGGGTTGGGCCTGAAGATCAATGCCGGTATTACAGACAAGGACCGGGCA
GAAAGCGCCTACTACCAGGACTTTATCGCGAAGAAGGACGATGGCGCGCA
CGGGCACCATTAG
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Synonyms
Publications