NO09G00640, NO09G00640 (gene) Nannochloropsis oceanica

Overview
NameNO09G00640
Unique NameNO09G00640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length875
Alignment locationchr9:239815..240689 -

Link to JBrowse

Properties
Property NameValue
DescriptionEndoplasmic reticulum, protein Pkr1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:239815..240689 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0070072vacuolar proton-transporting V-type ATPase complex assembly
GO:0070072vacuolar proton-transporting V-type ATPase complex assembly
Vocabulary: INTERPRO
TermDefinition
IPR013945ER_Pkr1
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO09G00640 vs. NCBI_GenBank
Match: EWM27723.1 (Endoplasmic reticulum, protein Pkr1 [Nannochloropsis gaditana])

HSP 1 Score: 147.1 bits (370), Expect = 4.000e-32
Identity = 88/144 (61.11%), Postives = 100/144 (69.44%), Query Frame = 0 
Query:    1 MSTSSQI-QAQRQRLETTPKKLGLFQSLLKPGWDSAEIVIPFLHKCLGALLAVLLYTAQHNDGHVRIHLLVMSGLTMGLWGSVTWFVREYRAALAKDKLGGNE---AGEGAP--SPLSGEQENEVAPAAIKNSVRTSKSLRYTD 139
            MS+ SQI + Q+QR  +  KK  LFQSLLKPGW+SAEIVIPFLH+CL ALLAVLLYTAQHN+GHVR HLLVMS LT+GLW SVTWF+REYR ALA  K  GN    A   +P  SP      +    AA K  +  S S RYTD
Sbjct:   66 MSSVSQIAKHQQQRGVSFVKKPSLFQSLLKPGWESAEIVIPFLHRCLAALLAVLLYTAQHNEGHVRFHLLVMSALTLGLWVSVTWFIREYRKALALSKKEGNSREMAAVSSPRRSPNKSGIFDTKNTAATKGRLENSSS-RYTD 208
The following BLAST results are available for this feature:
BLAST of NO09G00640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27723.14.000e-3261.11Endoplasmic reticulum, protein Pkr1 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010529NSK010529Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G00640.1NO09G00640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589310gene_4494Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100034g26gene2834Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G00640.1NO09G00640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G00640 ID=NO09G00640|Name=NO09G00640|organism=Nannochloropsis oceanica|type=gene|length=875bp
ACAAGAAGAAGCCTACTGGGGGGGTGCCGGTGGAGAGTTGATATCGTCCA
TGCATACTCTCACACGAAAAAGCTAGTCATATGCTTGCAATTTACATATT
CCGATGTCACCTCGTCCACTCCCATGTCCAGACACATCGTTCAAACCTAA
ATTGAGACTACATCTCGAATTTCGAAGCCAAATCTCTTGACTTGACTCGA
CATCTTTACTATAGTGAAGTTGTGTAGTCACTTCATCATCAGCCATAATG
TCGACATCCTCCCAGATCCAAGCGCAGCGGCAGCGTCTCGAAACCACTCC
GAAGAAGCTGGGCCTCTTTCAGTCTCTGCTCAAGCCCGGTTGGGATTCAG
CGGAGATCGTCATCCCCTTCTTGCACAAGTGCCTGGGCGCGCTCCTGGCC
GTCCTCCTCTACACAGCCCAGCACAACGACGGCCACGTGCGCATTCACCT
GCTCGTCATGTCCGGTTTGACCATGGGACTGTGGGGATCTGTCACATGGT
TTGTGCGGGAGTACCGAGCGGCCCTAGCCAAGGACAAGCTGGGCGGCAAT
GAAGCAGGGGAAGGAGCCCCTTCCCCCTTGTCTGGCGAGCAGGAAAACGA
GGTTGCTCCCGCCGCAATCAAGAATAGTGTGAGGACGAGTAAATCGTTGC
GGTATACGGATTGAGTGTGACGGATTCGTTGATTGATGTACGGGAGATCA
GACCTCTGCCCCGTACGGTAAGGGAGGGAGGATGTACACATGAATGTACA
CATGAATGACTGAATGAATCAAATGAGGTGCTCCGCACAAAGACAAATGA
ATGAAAATAAAAATGAAAATGAAGAGGCAGTATTCAGCACACTAGATACA
AAGCACAAGCTTAAGTAGATGCTCG
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protein sequence of NO09G00640.1

>NO09G00640.1-protein ID=NO09G00640.1-protein|Name=NO09G00640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=139bp
MSTSSQIQAQRQRLETTPKKLGLFQSLLKPGWDSAEIVIPFLHKCLGALL
AVLLYTAQHNDGHVRIHLLVMSGLTMGLWGSVTWFVREYRAALAKDKLGG
NEAGEGAPSPLSGEQENEVAPAAIKNSVRTSKSLRYTD*
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Synonyms
Publications