NO09G00640.1, NO09G00640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00640.1
Unique NameNO09G00640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length875
Alignment locationchr9:239815..240689 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:239815..240689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G00640.1 vs.
Match: EWM27723.1 (Endoplasmic reticulum, protein Pkr1 [Nannochloropsis gaditana])

HSP 1 Score: 147.1 bits (370), Expect = 4.000e-32
Identity = 88/144 (61.11%), Postives = 100/144 (69.44%), Query Frame = 0 
Query:    1 MSTSSQI-QAQRQRLETTPKKLGLFQSLLKPGWDSAEIVIPFLHKCLGALLAVLLYTAQHNDGHVRIHLLVMSGLTMGLWGSVTWFVREYRAALAKDKLGGNE---AGEGAP--SPLSGEQENEVAPAAIKNSVRTSKSLRYTD 139
            MS+ SQI + Q+QR  +  KK  LFQSLLKPGW+SAEIVIPFLH+CL ALLAVLLYTAQHN+GHVR HLLVMS LT+GLW SVTWF+REYR ALA  K  GN    A   +P  SP      +    AA K  +  S S RYTD
Sbjct:   66 MSSVSQIAKHQQQRGVSFVKKPSLFQSLLKPGWESAEIVIPFLHRCLAALLAVLLYTAQHNEGHVRFHLLVMSALTLGLWVSVTWFIREYRKALALSKKEGNSREMAAVSSPRRSPNKSGIFDTKNTAATKGRLENSSS-RYTD 208
The following BLAST results are available for this feature:
BLAST of NO09G00640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27723.14.000e-3261.11Endoplasmic reticulum, protein Pkr1 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00640NO09G00640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00640.1NO09G00640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00640.1.cds1NO09G00640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00640.1 ID=NO09G00640.1|Name=NO09G00640.1|organism=Nannochloropsis oceanica|type=mRNA|length=875bp
ACAAGAAGAAGCCTACTGGGGGGGTGCCGGTGGAGAGTTGATATCGTCCA
TGCATACTCTCACACGAAAAAGCTAGTCATATGCTTGCAATTTACATATT
CCGATGTCACCTCGTCCACTCCCATGTCCAGACACATCGTTCAAACCTAA
ATTGAGACTACATCTCGAATTTCGAAGCCAAATCTCTTGACTTGACTCGA
CATCTTTACTATAGTGAAGTTGTGTAGTCACTTCATCATCAGCCATAATG
TCGACATCCTCCCAGATCCAAGCGCAGCGGCAGCGTCTCGAAACCACTCC
GAAGAAGCTGGGCCTCTTTCAGTCTCTGCTCAAGCCCGGTTGGGATTCAG
CGGAGATCGTCATCCCCTTCTTGCACAAGTGCCTGGGCGCGCTCCTGGCC
GTCCTCCTCTACACAGCCCAGCACAACGACGGCCACGTGCGCATTCACCT
GCTCGTCATGTCCGGTTTGACCATGGGACTGTGGGGATCTGTCACATGGT
TTGTGCGGGAGTACCGAGCGGCCCTAGCCAAGGACAAGCTGGGCGGCAAT
GAAGCAGGGGAAGGAGCCCCTTCCCCCTTGTCTGGCGAGCAGGAAAACGA
GGTTGCTCCCGCCGCAATCAAGAATAGTGTGAGGACGAGTAAATCGTTGC
GGTATACGGATTGAGTGTGACGGATTCGTTGATTGATGTACGGGAGATCA
GACCTCTGCCCCGTACGGTAAGGGAGGGAGGATGTACACATGAATGTACA
CATGAATGACTGAATGAATCAAATGAGGTGCTCCGCACAAAGACAAATGA
ATGAAAATAAAAATGAAAATGAAGAGGCAGTATTCAGCACACTAGATACA
AAGCACAAGCTTAAGTAGATGCTCG
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protein sequence of NO09G00640.1

>NO09G00640.1-protein ID=NO09G00640.1-protein|Name=NO09G00640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=139bp
MSTSSQIQAQRQRLETTPKKLGLFQSLLKPGWDSAEIVIPFLHKCLGALL
AVLLYTAQHNDGHVRIHLLVMSGLTMGLWGSVTWFVREYRAALAKDKLGG
NEAGEGAPSPLSGEQENEVAPAAIKNSVRTSKSLRYTD*
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mRNA from alignment at chr9:239815..240689-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00640.1 ID=NO09G00640.1|Name=NO09G00640.1|organism=Nannochloropsis oceanica|type=mRNA|length=875bp|location=Sequence derived from alignment at chr9:239815..240689- (Nannochloropsis oceanica)
ACAAGAAGAAGCCTACTGGGGGGGTGCCGGTGGAGAGTTGATATCGTCCA
TGCATACTCTCACACGAAAAAGCTAGTCATATGCTTGCAATTTACATATT
CCGATGTCACCTCGTCCACTCCCATGTCCAGACACATCGTTCAAACCTAA
ATTGAGACTACATCTCGAATTTCGAAGCCAAATCTCTTGACTTGACTCGA
CATCTTTACTATAGTGAAGTTGTGTAGTCACTTCATCATCAGCCATAATG
TCGACATCCTCCCAGATCCAAGCGCAGCGGCAGCGTCTCGAAACCACTCC
GAAGAAGCTGGGCCTCTTTCAGTCTCTGCTCAAGCCCGGTTGGGATTCAG
CGGAGATCGTCATCCCCTTCTTGCACAAGTGCCTGGGCGCGCTCCTGGCC
GTCCTCCTCTACACAGCCCAGCACAACGACGGCCACGTGCGCATTCACCT
GCTCGTCATGTCCGGTTTGACCATGGGACTGTGGGGATCTGTCACATGGT
TTGTGCGGGAGTACCGAGCGGCCCTAGCCAAGGACAAGCTGGGCGGCAAT
GAAGCAGGGGAAGGAGCCCCTTCCCCCTTGTCTGGCGAGCAGGAAAACGA
GGTTGCTCCCGCCGCAATCAAGAATAGTGTGAGGACGAGTAAATCGTTGC
GGTATACGGATTGAGTGTGACGGATTCGTTGATTGATGTACGGGAGATCA
GACCTCTGCCCCGTACGGTAAGGGAGGGAGGATGTACACATGAATGTACA
CATGAATGACTGAATGAATCAAATGAGGTGCTCCGCACAAAGACAAATGA
ATGAAAATAAAAATGAAAATGAAGAGGCAGTATTCAGCACACTAGATACA
AAGCACAAGCTTAAGTAGATGCTCG
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Coding sequence (CDS) from alignment at chr9:239815..240689-

>NO09G00640.1 ID=NO09G00640.1|Name=NO09G00640.1|organism=Nannochloropsis oceanica|type=CDS|length=417bp|location=Sequence derived from alignment at chr9:239815..240689- (Nannochloropsis oceanica)
ATGTCGACATCCTCCCAGATCCAAGCGCAGCGGCAGCGTCTCGAAACCAC
TCCGAAGAAGCTGGGCCTCTTTCAGTCTCTGCTCAAGCCCGGTTGGGATT
CAGCGGAGATCGTCATCCCCTTCTTGCACAAGTGCCTGGGCGCGCTCCTG
GCCGTCCTCCTCTACACAGCCCAGCACAACGACGGCCACGTGCGCATTCA
CCTGCTCGTCATGTCCGGTTTGACCATGGGACTGTGGGGATCTGTCACAT
GGTTTGTGCGGGAGTACCGAGCGGCCCTAGCCAAGGACAAGCTGGGCGGC
AATGAAGCAGGGGAAGGAGCCCCTTCCCCCTTGTCTGGCGAGCAGGAAAA
CGAGGTTGCTCCCGCCGCAATCAAGAATAGTGTGAGGACGAGTAAATCGT
TGCGGTATACGGATTGA
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Synonyms
Publications