NO09G00550, NO09G00550 (gene) Nannochloropsis oceanica

Overview
NameNO09G00550
Unique NameNO09G00550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1173
Alignment locationchr9:218292..219464 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:218292..219464 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011008Dimeric_a/b-barrel
IPR013097Dabb
Homology
The following BLAST results are available for this feature:
BLAST of NO09G00550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G00550.1NO09G00550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565922gene_4503Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G00550.1NO09G00550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G00550 ID=NO09G00550|Name=NO09G00550|organism=Nannochloropsis oceanica|type=gene|length=1173bp
ATGATGGCATCTTCTCTTGCCATGTTGCTCCTAATGTGTACGACTTCGAC
GGTCGTCCACCGCGCCCATGCGACTGTGGGCGAAAGAACTGCCCTGACCC
GCCCTGAGGGTTTGGGTGGCACTCAGGTTGTGTCCTTGTACAAGgtaagc
tcaaacgttggttgaggtagcaagtaggggtgggggcgtctgagagttct
tgcgcgggaggcaggaaaggatgagggaagcacgcttttactaggtcagg
aatgtagcgtgtgacaaaaaaaggccagctacccttctccatccccagta
tcgtctgaagacagaaagaactcataaacgagatgctcacgacttgaatg
accatacatgcactcctacctgcccctccccgcccggacttatcttttca
tagtgccggcatcaaaaatgtgccgttctctcatgcagtaactgcgcttc
gcactccctttccctgcttccctcacccccctttcccccgtccccgcttc
catctcacaacagTGGAATGTTGGCATCGGTATTGAGGACAAGTACCGTG
CTATCGAGGGCTTTTGGAATGTGACTGCCGGCCACTTCCCCGTTTCCGAG
GGAGGGCTCACCTCCACCGCTGGTGAAGACCTTGGCCTCCTTCCCTACGC
GTACGACTTCGCCGTGACACTAGCTGTGCCGGACGGAGGGGATTTTGGGG
AGAGCACCACACGTCTGTCGTCTCATTATGAGCAGGTCCAACCTTACATC
CAAGCCTCTCACACACTCGTTTACACCAGCGACCGCGTGGCGATTGCTCG
TCCGACAGGGAAGCAGCTGAGGCATGTGTGCATCTATCATTTTAAAGCGG
AGGTGACGGGGGAGATGAAACTTAATGCCCTTCTAGACCTGGAGGGGACT
GTTCTGAACATCCCGGGAGTGGCTCATTTTTCTTGTGGACTAGATGAAGA
GAGAGCTCGTTCGCCTCACGGAGCCTTTGGTCTGGTGGCTGATTTTGAGG
TTGCGGAGGACTTTAACTCTTTCTTCGCGGACCCGTCCCGATTGAGGATG
ATGCAGGCGCTTAACCCCTTGCTGGCTTGTAGGACATGTGTCGATTATTG
GGCTCCCCAGGATATCATTGCGGAGGAAGAGGGTGCGCTGGCTGGGGCGA
TAGAGCTCCGTCGCCTGCACTGA
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protein sequence of NO09G00550.1

>NO09G00550.1-protein ID=NO09G00550.1-protein|Name=NO09G00550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MMASSLAMLLLMCTTSTVVHRAHATVGERTALTRPEGLGGTQVVSLYKWN
VGIGIEDKYRAIEGFWNVTAGHFPVSEGGLTSTAGEDLGLLPYAYDFAVT
LAVPDGGDFGESTTRLSSHYEQVQPYIQASHTLVYTSDRVAIARPTGKQL
RHVCIYHFKAEVTGEMKLNALLDLEGTVLNIPGVAHFSCGLDEERARSPH
GAFGLVADFEVAEDFNSFFADPSRLRMMQALNPLLACRTCVDYWAPQDII
AEEEGALAGAIELRRLH*
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Synonyms
Publications