NO09G00550.1, NO09G00550.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO09G00550.1
Unique Name	NO09G00550.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	804
Alignment location	chr9:218292..219464 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr9	genome	chr9:218292..219464 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO09G00550.1 vs.

BLAST of NO09G00550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO09G00550	NO09G00550	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO09G00550.1	NO09G00550.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO09G00550.1.cds1	NO09G00550.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO09G00550.1.cds2	NO09G00550.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr9:218292..219464-
coding sequence from alignment at chr9:218292..219464-

mRNA sequence

>NO09G00550.1 ID=NO09G00550.1|Name=NO09G00550.1|organism=Nannochloropsis oceanica|type=mRNA|length=804bp
ATGATGGCATCTTCTCTTGCCATGTTGCTCCTAATGTGTACGACTTCGAC
GGTCGTCCACCGCGCCCATGCGACTGTGGGCGAAAGAACTGCCCTGACCC
GCCCTGAGGGTTTGGGTGGCACTCAGGTTGTGTCCTTGTACAAGTGGAAT
GTTGGCATCGGTATTGAGGACAAGTACCGTGCTATCGAGGGCTTTTGGAA
TGTGACTGCCGGCCACTTCCCCGTTTCCGAGGGAGGGCTCACCTCCACCG
CTGGTGAAGACCTTGGCCTCCTTCCCTACGCGTACGACTTCGCCGTGACA
CTAGCTGTGCCGGACGGAGGGGATTTTGGGGAGAGCACCACACGTCTGTC
GTCTCATTATGAGCAGGTCCAACCTTACATCCAAGCCTCTCACACACTCG
TTTACACCAGCGACCGCGTGGCGATTGCTCGTCCGACAGGGAAGCAGCTG
AGGCATGTGTGCATCTATCATTTTAAAGCGGAGGTGACGGGGGAGATGAA
ACTTAATGCCCTTCTAGACCTGGAGGGGACTGTTCTGAACATCCCGGGAG
TGGCTCATTTTTCTTGTGGACTAGATGAAGAGAGAGCTCGTTCGCCTCAC
GGAGCCTTTGGTCTGGTGGCTGATTTTGAGGTTGCGGAGGACTTTAACTC
TTTCTTCGCGGACCCGTCCCGATTGAGGATGATGCAGGCGCTTAACCCCT
TGCTGGCTTGTAGGACATGTGTCGATTATTGGGCTCCCCAGGATATCATT
GCGGAGGAAGAGGGTGCGCTGGCTGGGGCGATAGAGCTCCGTCGCCTGCA
CTGA

protein sequence of NO09G00550.1

>NO09G00550.1-protein ID=NO09G00550.1-protein|Name=NO09G00550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MMASSLAMLLLMCTTSTVVHRAHATVGERTALTRPEGLGGTQVVSLYKWN
VGIGIEDKYRAIEGFWNVTAGHFPVSEGGLTSTAGEDLGLLPYAYDFAVT
LAVPDGGDFGESTTRLSSHYEQVQPYIQASHTLVYTSDRVAIARPTGKQL
RHVCIYHFKAEVTGEMKLNALLDLEGTVLNIPGVAHFSCGLDEERARSPH
GAFGLVADFEVAEDFNSFFADPSRLRMMQALNPLLACRTCVDYWAPQDII
AEEEGALAGAIELRRLH*

mRNA from alignment at chr9:218292..219464-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO09G00550.1 ID=NO09G00550.1|Name=NO09G00550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1173bp|location=Sequence derived from alignment at chr9:218292..219464- (Nannochloropsis oceanica)
ATGATGGCATCTTCTCTTGCCATGTTGCTCCTAATGTGTACGACTTCGAC
GGTCGTCCACCGCGCCCATGCGACTGTGGGCGAAAGAACTGCCCTGACCC
GCCCTGAGGGTTTGGGTGGCACTCAGGTTGTGTCCTTGTACAAGGTAAGC
TCAAACGTTGGTTGAGGTAGCAAGTAGGGGTGGGGGCGTCTGAGAGTTCT
TGCGCGGGAGGCAGGAAAGGATGAGGGAAGCACGCTTTTACTAGGTCAGG
AATGTAGCGTGTGACAAAAAAAGGCCAGCTACCCTTCTCCATCCCCAGTA
TCGTCTGAAGACAGAAAGAACTCATAAACGAGATGCTCACGACTTGAATG
ACCATACATGCACTCCTACCTGCCCCTCCCCGCCCGGACTTATCTTTTCA
TAGTGCCGGCATCAAAAATGTGCCGTTCTCTCATGCAGTAACTGCGCTTC
GCACTCCCTTTCCCTGCTTCCCTCACCCCCCTTTCCCCCGTCCCCGCTTC
CATCTCACAACAGTGGAATGTTGGCATCGGTATTGAGGACAAGTACCGTG
CTATCGAGGGCTTTTGGAATGTGACTGCCGGCCACTTCCCCGTTTCCGAG
GGAGGGCTCACCTCCACCGCTGGTGAAGACCTTGGCCTCCTTCCCTACGC
GTACGACTTCGCCGTGACACTAGCTGTGCCGGACGGAGGGGATTTTGGGG
AGAGCACCACACGTCTGTCGTCTCATTATGAGCAGGTCCAACCTTACATC
CAAGCCTCTCACACACTCGTTTACACCAGCGACCGCGTGGCGATTGCTCG
TCCGACAGGGAAGCAGCTGAGGCATGTGTGCATCTATCATTTTAAAGCGG
AGGTGACGGGGGAGATGAAACTTAATGCCCTTCTAGACCTGGAGGGGACT
GTTCTGAACATCCCGGGAGTGGCTCATTTTTCTTGTGGACTAGATGAAGA
GAGAGCTCGTTCGCCTCACGGAGCCTTTGGTCTGGTGGCTGATTTTGAGG
TTGCGGAGGACTTTAACTCTTTCTTCGCGGACCCGTCCCGATTGAGGATG
ATGCAGGCGCTTAACCCCTTGCTGGCTTGTAGGACATGTGTCGATTATTG
GGCTCCCCAGGATATCATTGCGGAGGAAGAGGGTGCGCTGGCTGGGGCGA
TAGAGCTCCGTCGCCTGCACTGA

Coding sequence (CDS) from alignment at chr9:218292..219464-

>NO09G00550.1 ID=NO09G00550.1|Name=NO09G00550.1|organism=Nannochloropsis oceanica|type=CDS|length=804bp|location=Sequence derived from alignment at chr9:218292..219464- (Nannochloropsis oceanica)
ATGATGGCATCTTCTCTTGCCATGTTGCTCCTAATGTGTACGACTTCGAC
GGTCGTCCACCGCGCCCATGCGACTGTGGGCGAAAGAACTGCCCTGACCC
GCCCTGAGGGTTTGGGTGGCACTCAGGTTGTGTCCTTGTACAAGTGGAAT
GTTGGCATCGGTATTGAGGACAAGTACCGTGCTATCGAGGGCTTTTGGAA
TGTGACTGCCGGCCACTTCCCCGTTTCCGAGGGAGGGCTCACCTCCACCG
CTGGTGAAGACCTTGGCCTCCTTCCCTACGCGTACGACTTCGCCGTGACA
CTAGCTGTGCCGGACGGAGGGGATTTTGGGGAGAGCACCACACGTCTGTC
GTCTCATTATGAGCAGGTCCAACCTTACATCCAAGCCTCTCACACACTCG
TTTACACCAGCGACCGCGTGGCGATTGCTCGTCCGACAGGGAAGCAGCTG
AGGCATGTGTGCATCTATCATTTTAAAGCGGAGGTGACGGGGGAGATGAA
ACTTAATGCCCTTCTAGACCTGGAGGGGACTGTTCTGAACATCCCGGGAG
TGGCTCATTTTTCTTGTGGACTAGATGAAGAGAGAGCTCGTTCGCCTCAC
GGAGCCTTTGGTCTGGTGGCTGATTTTGAGGTTGCGGAGGACTTTAACTC
TTTCTTCGCGGACCCGTCCCGATTGAGGATGATGCAGGCGCTTAACCCCT
TGCTGGCTTGTAGGACATGTGTCGATTATTGGGCTCCCCAGGATATCATT
GCGGAGGAAGAGGGTGCGCTGGCTGGGGCGATAGAGCTCCGTCGCCTGCA
CTGA

Synonyms

Publications