NO09G00500, NO09G00500 (gene) Nannochloropsis oceanica

Overview
NameNO09G00500
Unique NameNO09G00500
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length504
Alignment locationchr9:207204..207707 +

Link to JBrowse

Properties
Property NameValue
DescriptionJAB1/Mov34/MPN/PAD-1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:207204..207707 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO09G00500 vs. NCBI_GenBank
Match: EWM27712.1 (JAB1/Mov34/MPN/PAD-1 [Nannochloropsis gaditana])

HSP 1 Score: 134.8 bits (338), Expect = 2.500e-28
Identity = 61/87 (70.11%), Postives = 72/87 (82.76%), Query Frame = 0 
Query:    2 METVKALVEYYSRLGTRVNFEEEWRRGMSKGEKFELSLQMRVQQLPLGSVVRREFFLRRLIEYVCACWAENAPKKMPQPEDFSGTRS 89
            +ETV+ALV+YYSRL TRV F+EEWR+G+ KGEKFE SL+ RV QL LG   R+E FL  L+EY+CACWAE  PKK+PQPEDFSGTRS
Sbjct: 1225 LETVRALVQYYSRLDTRVKFDEEWRKGVCKGEKFEFSLRKRVNQLSLGDAFRQEEFLTLLVEYICACWAEGTPKKLPQPEDFSGTRS 1311
The following BLAST results are available for this feature:
BLAST of NO09G00500 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27712.12.500e-2870.11JAB1/Mov34/MPN/PAD-1 [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G00500.1NO09G00500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G00500.1NO09G00500.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G00500 ID=NO09G00500|Name=NO09G00500|organism=Nannochloropsis oceanica|type=gene|length=504bp
ATGATGGAGACAGTCAAGGCGTTGGTAGAGTACTACAGTAGGCTCGGGAC
AAGGGTTAATTTCGAGGAGGAATGGAGGAGAGGCATGTCTAAAGGGGAGA
AATTCGAGTTGTCGTTGCAGATGCGCGTGCAGCAATTACCGTTAGGCAGT
GTGGTGAGACGGGAGTTCTTTCTAAGGAGGTTAATTGAGTATGTGTGCGC
CTGTTGGGCGGAGAATGCACCAAAAAAGATGCCGCAGCCGGAGGACTTCA
GTGGCACGAGGAGTGAAAGGAGGGCAGCGGCGGCTGCGGCTGCTGCGGCA
GTCTTGAGGAAGGAGAGGAAGGAACAGGGAGTGAAAGAGAAGGGGATGGA
AAAGAAAGAGAAGGGGGCGGTGGCAGCAGCAGCAGCAGAAACAACAACAG
CAGCAGCTACGGTTGAGCCCGTTCTAGGCAGAATGTGCGTGGGGCAGGGA
GGAGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCGGCGGCGGCGTTGAG
GTGA
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protein sequence of NO09G00500.1

>NO09G00500.1-protein ID=NO09G00500.1-protein|Name=NO09G00500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MMETVKALVEYYSRLGTRVNFEEEWRRGMSKGEKFELSLQMRVQQLPLGS
VVRREFFLRRLIEYVCACWAENAPKKMPQPEDFSGTRSERRAAAAAAAAA
VLRKERKEQGVKEKGMEKKEKGAVAAAAAETTTAAATVEPVLGRMCVGQG
GGEEEEEEEEEAAAALR*
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Synonyms
Publications