NO09G00500.1, NO09G00500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00500.1
Unique NameNO09G00500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length504
Alignment locationchr9:207204..207707 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:207204..207707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G00500.1 vs.
Match: EWM27712.1 (JAB1/Mov34/MPN/PAD-1 [Nannochloropsis gaditana])

HSP 1 Score: 150.6 bits (379), Expect = 4.300e-33
Identity = 72/103 (69.90%), Postives = 87/103 (84.47%), Query Frame = 0 
Query:    2 METVKALVEYYSRLGTRVNFEEEWRRGMSKGEKFELSLQMRVQQLPLGSVVRREFFLRRLIEYVCACWAENAPKKMPQPEDFSGTRSERRAAAAAAAAAVLRK 105
            +ETV+ALV+YYSRL TRV F+EEWR+G+ KGEKFE SL+ RV QL LG   R+E FL  L+EY+CACWAE  PKK+PQPEDFSGTRSERRAAAAAA +A+L++
Sbjct: 1225 LETVRALVQYYSRLDTRVKFDEEWRKGVCKGEKFEFSLRKRVNQLSLGDAFRQEEFLTLLVEYICACWAEGTPKKLPQPEDFSGTRSERRAAAAAATSALLQE 1327
The following BLAST results are available for this feature:
BLAST of NO09G00500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27712.14.300e-3369.90JAB1/Mov34/MPN/PAD-1 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00500NO09G00500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00500.1NO09G00500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00500.1.cds1NO09G00500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00500.1 ID=NO09G00500.1|Name=NO09G00500.1|organism=Nannochloropsis oceanica|type=mRNA|length=504bp
ATGATGGAGACAGTCAAGGCGTTGGTAGAGTACTACAGTAGGCTCGGGAC
AAGGGTTAATTTCGAGGAGGAATGGAGGAGAGGCATGTCTAAAGGGGAGA
AATTCGAGTTGTCGTTGCAGATGCGCGTGCAGCAATTACCGTTAGGCAGT
GTGGTGAGACGGGAGTTCTTTCTAAGGAGGTTAATTGAGTATGTGTGCGC
CTGTTGGGCGGAGAATGCACCAAAAAAGATGCCGCAGCCGGAGGACTTCA
GTGGCACGAGGAGTGAAAGGAGGGCAGCGGCGGCTGCGGCTGCTGCGGCA
GTCTTGAGGAAGGAGAGGAAGGAACAGGGAGTGAAAGAGAAGGGGATGGA
AAAGAAAGAGAAGGGGGCGGTGGCAGCAGCAGCAGCAGAAACAACAACAG
CAGCAGCTACGGTTGAGCCCGTTCTAGGCAGAATGTGCGTGGGGCAGGGA
GGAGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCGGCGGCGGCGTTGAG
GTGA
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protein sequence of NO09G00500.1

>NO09G00500.1-protein ID=NO09G00500.1-protein|Name=NO09G00500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MMETVKALVEYYSRLGTRVNFEEEWRRGMSKGEKFELSLQMRVQQLPLGS
VVRREFFLRRLIEYVCACWAENAPKKMPQPEDFSGTRSERRAAAAAAAAA
VLRKERKEQGVKEKGMEKKEKGAVAAAAAETTTAAATVEPVLGRMCVGQG
GGEEEEEEEEEAAAALR*
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mRNA from alignment at chr9:207204..207707+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00500.1 ID=NO09G00500.1|Name=NO09G00500.1|organism=Nannochloropsis oceanica|type=mRNA|length=504bp|location=Sequence derived from alignment at chr9:207204..207707+ (Nannochloropsis oceanica)
ATGATGGAGACAGTCAAGGCGTTGGTAGAGTACTACAGTAGGCTCGGGAC
AAGGGTTAATTTCGAGGAGGAATGGAGGAGAGGCATGTCTAAAGGGGAGA
AATTCGAGTTGTCGTTGCAGATGCGCGTGCAGCAATTACCGTTAGGCAGT
GTGGTGAGACGGGAGTTCTTTCTAAGGAGGTTAATTGAGTATGTGTGCGC
CTGTTGGGCGGAGAATGCACCAAAAAAGATGCCGCAGCCGGAGGACTTCA
GTGGCACGAGGAGTGAAAGGAGGGCAGCGGCGGCTGCGGCTGCTGCGGCA
GTCTTGAGGAAGGAGAGGAAGGAACAGGGAGTGAAAGAGAAGGGGATGGA
AAAGAAAGAGAAGGGGGCGGTGGCAGCAGCAGCAGCAGAAACAACAACAG
CAGCAGCTACGGTTGAGCCCGTTCTAGGCAGAATGTGCGTGGGGCAGGGA
GGAGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCGGCGGCGGCGTTGAG
GTGA
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Coding sequence (CDS) from alignment at chr9:207204..207707+

>NO09G00500.1 ID=NO09G00500.1|Name=NO09G00500.1|organism=Nannochloropsis oceanica|type=CDS|length=504bp|location=Sequence derived from alignment at chr9:207204..207707+ (Nannochloropsis oceanica)
ATGATGGAGACAGTCAAGGCGTTGGTAGAGTACTACAGTAGGCTCGGGAC
AAGGGTTAATTTCGAGGAGGAATGGAGGAGAGGCATGTCTAAAGGGGAGA
AATTCGAGTTGTCGTTGCAGATGCGCGTGCAGCAATTACCGTTAGGCAGT
GTGGTGAGACGGGAGTTCTTTCTAAGGAGGTTAATTGAGTATGTGTGCGC
CTGTTGGGCGGAGAATGCACCAAAAAAGATGCCGCAGCCGGAGGACTTCA
GTGGCACGAGGAGTGAAAGGAGGGCAGCGGCGGCTGCGGCTGCTGCGGCA
GTCTTGAGGAAGGAGAGGAAGGAACAGGGAGTGAAAGAGAAGGGGATGGA
AAAGAAAGAGAAGGGGGCGGTGGCAGCAGCAGCAGCAGAAACAACAACAG
CAGCAGCTACGGTTGAGCCCGTTCTAGGCAGAATGTGCGTGGGGCAGGGA
GGAGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCGGCGGCGGCGTTGAG
GTGA
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Synonyms
Publications