NO09G00240, NO09G00240 (gene) Nannochloropsis oceanica

Overview
NameNO09G00240
Unique NameNO09G00240
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1664
Alignment locationchr9:134013..135676 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:134013..135676 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO09G00240 vs. NCBI_GenBank
Match: XP_005852578.1 (hypothetical protein NGA_0704700, partial [Nannochloropsis gaditana CCMP526] >EKU23252.1 hypothetical protein NGA_0704700, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 124.0 bits (310), Expect = 1.200e-24
Identity = 83/196 (42.35%), Postives = 105/196 (53.57%), Query Frame = 0 
Query:   14 VGQMVRVRSSLSPGAPTCRATILTVGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDVLYEDGVEWADGKEEEANVNVERLERLQPYEEADGGGGKEVRAAAAAVEPTKQGE-RETGQTLREQGNELFMTHKDYGAALGCYARAMEELAPREGKGALRIGAAVLVTAAAPAQGDESSGSRKKQMEVRRA 209
            +GQ +RVR  L   +  CRATILT+ E                                   VDVL++DG++WA+GKEEEA V ++RL  L+P+EE    G    R A   V  T   E RE  Q LREQGN+LF  +KDYGAAL  Y+ A+E L PREGKG LR+GA+VL+T    A G      R+KQ  + RA
Sbjct:   16 IGQTIRVRLGLDSSSRHCRATILTLNE------------------------------GCPHTVDVLFQDGMDWAEGKEEEAQVPLDRLFGLEPFEE----GRDAERVAIGKVGGTGAEERRERAQRLREQGNQLFTKYKDYGAALEFYSEALEILGPREGKGGLRVGASVLIT----APGTRRESPREKQAAIARA 173
[Close]
BLAST of NO09G00240 vs. NCBI_GenBank
Match: EWM27786.1 (Elongated TPR repeat-containing domain protein [Nannochloropsis gaditana])

HSP 1 Score: 111.7 bits (278), Expect = 6.400e-21
Identity = 72/167 (43.11%), Postives = 90/167 (53.89%), Query Frame = 0 
Query:   14 VGQMVRVRSSLSPGAPTCRATILTVGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDVLYEDGVEWADGKEEEANVNVERLERLQPYEEADGGGGKEVRAAAAAVEPTKQGE-RETGQTLREQGNELFMTHKDYGAALGCYARAMEELAPREGKGALRIG 180
            +GQ +RVR  L   +  CRATILT+ E                                   VDVL++DG++WA+GKEEEA V ++RL  L+P+EE    G    R A   V  T   E RE  Q LREQGN+LF  +KDYGAAL  Y+ A+E L PREGKG LR+G
Sbjct:   16 IGQTIRVRLGLDSSSRHCRATILTLNE------------------------------GCPHTVDVLFQDGMDWAEGKEEEAQVPLDRLFGLEPFEE----GRDAERVAIGKVGGTGAEERRERAQRLREQGNQLFTKYKDYGAALEFYSEALEILGPREGKGGLRVG 148
The following BLAST results are available for this feature:
BLAST of NO09G00240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005852578.11.200e-2442.35hypothetical protein NGA_0704700, partial [Nannoch... [more]
EWM27786.16.400e-2143.11Elongated TPR repeat-containing domain protein [Na... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010458NSK010458Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G00240.1NO09G00240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|26557gene_4532Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100605g4gene2775Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G00240.1NO09G00240.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G00240 ID=NO09G00240|Name=NO09G00240|organism=Nannochloropsis oceanica|type=gene|length=1664bp
ATGCTGAAGGGCAGGGATACCGAGGACAGGGAATGGGTGGTTGGCCAAAT
GGTCCGCGTCCGCTCATCGCTTAGCCCTGGTGCGCCGACATGCCGCGCGA
CCATCCTCACTGTTGGCGAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAG
CAACAACAACAGCAGCGGCGGCACCGTGGACGTGCTGTACGAGGACGGCG
TGGAATGGGCAGATGGAAAAGAGGAGGAAGCAAACGTGAACGTGGAGCGG
CTGGAGCGGCTGCAGCCTTACGAAGAGGCAGATGGAGGAGGAGGAAAGGA
GGTAAGAGCAGCTGCGGCAGCAGTAGAGCCGACAAAGCAGGGAGAGCGTG
AGACGGGACAAACATTACGGGAACAAGGGAATGAGTTGTTTATGACGCAC
AAGGACTATGGCGCGGCTTTGGGGTGCTATGCGAGGGCAATGGAGGAGTT
GGCCCCGCGAGAGGGAAAGGGAGCACTGCGGATTGgtgcgtgcttacgag
gggattagaaaagagagaagagggatacgatgggatgaggatgtatgcgt
gtgtgtatgttgtcgggaggaatccaatgacttaagttaggcgtgtggag
ctcaggttgcatttgtggctagaagaggcgtgaaagagaaagaaaagagt
agtgtggtcaacccaaacccccctccctcccttcctccctccctccctac
ctaaaccagGCGCTGCAGTCCTAGTCACTGCTGCGGCACCAGCACAAGGA
GATGAGAGCAGCGGTAGCAGGAAAAAGCAAATGGAAGTGAGACGCGCGAC
CCTGGCCGATGTGGACGAAAGATCCCGAACAGTGGATGTACTCTTCGACG
ATAGCAGCAGCAGCAACAGTAGCAGTAGCAGAGCCCACGGAAACGGACAA
GAGAAAGACGACGAGGACGGAGAAGAAGAAGACGATGTCCCCATTTCCCG
CCTTCTGCCCCTCGCCCTCCTTCCCTCCCTCCAAGTAGCCCAGGTCAAGG
TCCTCTTGAACAGCGCTCGGTGTTATTTGAAGAGTCACATGGGCCGTCTG
TCCGAGGCCTTGATGAGTGTCTCATTGGCGATAGCGGTGCTGCAGCCATT
TGTTTTCCCCAAGACGGGAGAAGGGGAGAAATGCGGGGAGGGAAAGGGGG
AGGAGGTGGGGGTCGAGGAATGGAGACGACTGCTGGTGCTGGCATATGAG
ATACGGTCCAAAGCGCTGAGTAAAGGAGGTGAGTTTTCCTTGGCCAGACT
AGACGCTCGACGCATCTTGCAGGTAGCGGCGCGGCTGCAGACGCAAGAAA
AGGGAGGAGGAGGAGGAGGGGGAGGAGTGACGGCGGCGGCGTTGCGGGAG
AAGGTGAAGGGCTTGGCGGAGGAAATTGAGAGGGAGGCGAAGAGGCGGGA
GATGGCTGATAAACGATTGCTTAAATCGATGACGCGATGGATCAATACTG
CCATGGAGAGTGGGGGGGGAAGCGGAGGAGGTGGAGGAGGAGGGGAGGGG
AGGGGGGGGGAGAGGGGAGGGAGTACCGGCGATAGTGGTGGTGATAGGGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGAAAAGGAAGAGT
GCAGCGTCGGCTAA
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protein sequence of NO09G00240.1

>NO09G00240.1-protein ID=NO09G00240.1-protein|Name=NO09G00240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=480bp
MLKGRDTEDREWVVGQMVRVRSSLSPGAPTCRATILTVGESSSSSSSSSS
SSSSSSSSSSSSSSSGSNNNSSGGTVDVLYEDGVEWADGKEEEANVNVER
LERLQPYEEADGGGGKEVRAAAAAVEPTKQGERETGQTLREQGNELFMTH
KDYGAALGCYARAMEELAPREGKGALRIGAAVLVTAAAPAQGDESSGSRK
KQMEVRRATLADVDERSRTVDVLFDDSSSSNSSSSRAHGNGQEKDDEDGE
EEDDVPISRLLPLALLPSLQVAQVKVLLNSARCYLKSHMGRLSEALMSVS
LAIAVLQPFVFPKTGEGEKCGEGKGEEVGVEEWRRLLVLAYEIRSKALSK
GGEFSLARLDARRILQVAARLQTQEKGGGGGGGGVTAAALREKVKGLAEE
IEREAKRREMADKRLLKSMTRWINTAMESGGGSGGGGGGGEGRGGERGGS
TGDSGGDRGGGGGGGGGGGGEEKEECSVG*
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Synonyms
Publications