NO09G00240.1, NO09G00240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00240.1
Unique NameNO09G00240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1440
Alignment locationchr9:134013..135676 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:134013..135676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO09G00240.1 vs.
Match: XP_005852578.1 (hypothetical protein NGA_0704700, partial [Nannochloropsis gaditana CCMP526]; EKU23252.1 hypothetical protein NGA_0704700, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 121.3 bits (303), Expect = 8.100e-24
Identity = 84/196 (42.86%), Postives = 106/196 (54.08%), Query Frame = 0 
Query:   14 VGQMVRVRSSLSPGAPTCRATILTVGESSSSSSSSSSSSSSSSSSSSSSSSSGSNNNSSGGTVDVLYEDGVEWADGKEEEANVNVERLERLQPYEEADGGGGKEVRAAAAAVEPTKQGER-ETGQTLREQGNELFMTHKDYGAALGCYARAMEELAPREGKGALRIGAAVLVTAAAPAQGDESSGSRKKQMEVRRA 209
            +GQ +RVR  L   +  CRATILT+ E                                  TVDVL++DG++WA+GKEEEA V ++RL  L+P+EE    G    R A   V  T   ER E  Q LREQGN+LF  +KDYGAAL  Y+ A+E L PREGKG LR+GA+VL+T    A G      R+KQ  + RA
Sbjct:   16 IGQTIRVRLGLDSSSRHCRATILTLNEGCPH------------------------------TVDVLFQDGMDWAEGKEEEAQVPLDRLFGLEPFEE----GRDAERVAIGKVGGTGAEERRERAQRLREQGNQLFTKYKDYGAALEFYSEALEILGPREGKGGLRVGASVLIT----APGTRRESPREKQAAIARA 173
The following BLAST results are available for this feature:
BLAST of NO09G00240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852578.18.100e-2442.86hypothetical protein NGA_0704700, partial [Nannoch... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00240NO09G00240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00240.1NO09G00240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00240.1.cds1NO09G00240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00240.1.cds2NO09G00240.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00240.1 ID=NO09G00240.1|Name=NO09G00240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1440bp
ATGCTGAAGGGCAGGGATACCGAGGACAGGGAATGGGTGGTTGGCCAAAT
GGTCCGCGTCCGCTCATCGCTTAGCCCTGGTGCGCCGACATGCCGCGCGA
CCATCCTCACTGTTGGCGAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAG
CAACAACAACAGCAGCGGCGGCACCGTGGACGTGCTGTACGAGGACGGCG
TGGAATGGGCAGATGGAAAAGAGGAGGAAGCAAACGTGAACGTGGAGCGG
CTGGAGCGGCTGCAGCCTTACGAAGAGGCAGATGGAGGAGGAGGAAAGGA
GGTAAGAGCAGCTGCGGCAGCAGTAGAGCCGACAAAGCAGGGAGAGCGTG
AGACGGGACAAACATTACGGGAACAAGGGAATGAGTTGTTTATGACGCAC
AAGGACTATGGCGCGGCTTTGGGGTGCTATGCGAGGGCAATGGAGGAGTT
GGCCCCGCGAGAGGGAAAGGGAGCACTGCGGATTGGCGCTGCAGTCCTAG
TCACTGCTGCGGCACCAGCACAAGGAGATGAGAGCAGCGGTAGCAGGAAA
AAGCAAATGGAAGTGAGACGCGCGACCCTGGCCGATGTGGACGAAAGATC
CCGAACAGTGGATGTACTCTTCGACGATAGCAGCAGCAGCAACAGTAGCA
GTAGCAGAGCCCACGGAAACGGACAAGAGAAAGACGACGAGGACGGAGAA
GAAGAAGACGATGTCCCCATTTCCCGCCTTCTGCCCCTCGCCCTCCTTCC
CTCCCTCCAAGTAGCCCAGGTCAAGGTCCTCTTGAACAGCGCTCGGTGTT
ATTTGAAGAGTCACATGGGCCGTCTGTCCGAGGCCTTGATGAGTGTCTCA
TTGGCGATAGCGGTGCTGCAGCCATTTGTTTTCCCCAAGACGGGAGAAGG
GGAGAAATGCGGGGAGGGAAAGGGGGAGGAGGTGGGGGTCGAGGAATGGA
GACGACTGCTGGTGCTGGCATATGAGATACGGTCCAAAGCGCTGAGTAAA
GGAGGTGAGTTTTCCTTGGCCAGACTAGACGCTCGACGCATCTTGCAGGT
AGCGGCGCGGCTGCAGACGCAAGAAAAGGGAGGAGGAGGAGGAGGGGGAG
GAGTGACGGCGGCGGCGTTGCGGGAGAAGGTGAAGGGCTTGGCGGAGGAA
ATTGAGAGGGAGGCGAAGAGGCGGGAGATGGCTGATAAACGATTGCTTAA
ATCGATGACGCGATGGATCAATACTGCCATGGAGAGTGGGGGGGGAAGCG
GAGGAGGTGGAGGAGGAGGGGAGGGGAGGGGGGGGGAGAGGGGAGGGAGT
ACCGGCGATAGTGGTGGTGATAGGGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGAAGAAAAGGAAGAGTGCAGCGTCGGCTAA
back to top

protein sequence of NO09G00240.1

>NO09G00240.1-protein ID=NO09G00240.1-protein|Name=NO09G00240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=480bp
MLKGRDTEDREWVVGQMVRVRSSLSPGAPTCRATILTVGESSSSSSSSSS
SSSSSSSSSSSSSSSGSNNNSSGGTVDVLYEDGVEWADGKEEEANVNVER
LERLQPYEEADGGGGKEVRAAAAAVEPTKQGERETGQTLREQGNELFMTH
KDYGAALGCYARAMEELAPREGKGALRIGAAVLVTAAAPAQGDESSGSRK
KQMEVRRATLADVDERSRTVDVLFDDSSSSNSSSSRAHGNGQEKDDEDGE
EEDDVPISRLLPLALLPSLQVAQVKVLLNSARCYLKSHMGRLSEALMSVS
LAIAVLQPFVFPKTGEGEKCGEGKGEEVGVEEWRRLLVLAYEIRSKALSK
GGEFSLARLDARRILQVAARLQTQEKGGGGGGGGVTAAALREKVKGLAEE
IEREAKRREMADKRLLKSMTRWINTAMESGGGSGGGGGGGEGRGGERGGS
TGDSGGDRGGGGGGGGGGGGEEKEECSVG*
back to top

mRNA from alignment at chr9:134013..135676+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00240.1 ID=NO09G00240.1|Name=NO09G00240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1664bp|location=Sequence derived from alignment at chr9:134013..135676+ (Nannochloropsis oceanica)
ATGCTGAAGGGCAGGGATACCGAGGACAGGGAATGGGTGGTTGGCCAAAT
GGTCCGCGTCCGCTCATCGCTTAGCCCTGGTGCGCCGACATGCCGCGCGA
CCATCCTCACTGTTGGCGAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAG
CAACAACAACAGCAGCGGCGGCACCGTGGACGTGCTGTACGAGGACGGCG
TGGAATGGGCAGATGGAAAAGAGGAGGAAGCAAACGTGAACGTGGAGCGG
CTGGAGCGGCTGCAGCCTTACGAAGAGGCAGATGGAGGAGGAGGAAAGGA
GGTAAGAGCAGCTGCGGCAGCAGTAGAGCCGACAAAGCAGGGAGAGCGTG
AGACGGGACAAACATTACGGGAACAAGGGAATGAGTTGTTTATGACGCAC
AAGGACTATGGCGCGGCTTTGGGGTGCTATGCGAGGGCAATGGAGGAGTT
GGCCCCGCGAGAGGGAAAGGGAGCACTGCGGATTGGTGCGTGCTTACGAG
GGGATTAGAAAAGAGAGAAGAGGGATACGATGGGATGAGGATGTATGCGT
GTGTGTATGTTGTCGGGAGGAATCCAATGACTTAAGTTAGGCGTGTGGAG
CTCAGGTTGCATTTGTGGCTAGAAGAGGCGTGAAAGAGAAAGAAAAGAGT
AGTGTGGTCAACCCAAACCCCCCTCCCTCCCTTCCTCCCTCCCTCCCTAC
CTAAACCAGGCGCTGCAGTCCTAGTCACTGCTGCGGCACCAGCACAAGGA
GATGAGAGCAGCGGTAGCAGGAAAAAGCAAATGGAAGTGAGACGCGCGAC
CCTGGCCGATGTGGACGAAAGATCCCGAACAGTGGATGTACTCTTCGACG
ATAGCAGCAGCAGCAACAGTAGCAGTAGCAGAGCCCACGGAAACGGACAA
GAGAAAGACGACGAGGACGGAGAAGAAGAAGACGATGTCCCCATTTCCCG
CCTTCTGCCCCTCGCCCTCCTTCCCTCCCTCCAAGTAGCCCAGGTCAAGG
TCCTCTTGAACAGCGCTCGGTGTTATTTGAAGAGTCACATGGGCCGTCTG
TCCGAGGCCTTGATGAGTGTCTCATTGGCGATAGCGGTGCTGCAGCCATT
TGTTTTCCCCAAGACGGGAGAAGGGGAGAAATGCGGGGAGGGAAAGGGGG
AGGAGGTGGGGGTCGAGGAATGGAGACGACTGCTGGTGCTGGCATATGAG
ATACGGTCCAAAGCGCTGAGTAAAGGAGGTGAGTTTTCCTTGGCCAGACT
AGACGCTCGACGCATCTTGCAGGTAGCGGCGCGGCTGCAGACGCAAGAAA
AGGGAGGAGGAGGAGGAGGGGGAGGAGTGACGGCGGCGGCGTTGCGGGAG
AAGGTGAAGGGCTTGGCGGAGGAAATTGAGAGGGAGGCGAAGAGGCGGGA
GATGGCTGATAAACGATTGCTTAAATCGATGACGCGATGGATCAATACTG
CCATGGAGAGTGGGGGGGGAAGCGGAGGAGGTGGAGGAGGAGGGGAGGGG
AGGGGGGGGGAGAGGGGAGGGAGTACCGGCGATAGTGGTGGTGATAGGGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGAAAAGGAAGAGT
GCAGCGTCGGCTAA
back to top

Coding sequence (CDS) from alignment at chr9:134013..135676+

>NO09G00240.1 ID=NO09G00240.1|Name=NO09G00240.1|organism=Nannochloropsis oceanica|type=CDS|length=1440bp|location=Sequence derived from alignment at chr9:134013..135676+ (Nannochloropsis oceanica)
ATGCTGAAGGGCAGGGATACCGAGGACAGGGAATGGGTGGTTGGCCAAAT
GGTCCGCGTCCGCTCATCGCTTAGCCCTGGTGCGCCGACATGCCGCGCGA
CCATCCTCACTGTTGGCGAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAG
CAACAACAACAGCAGCGGCGGCACCGTGGACGTGCTGTACGAGGACGGCG
TGGAATGGGCAGATGGAAAAGAGGAGGAAGCAAACGTGAACGTGGAGCGG
CTGGAGCGGCTGCAGCCTTACGAAGAGGCAGATGGAGGAGGAGGAAAGGA
GGTAAGAGCAGCTGCGGCAGCAGTAGAGCCGACAAAGCAGGGAGAGCGTG
AGACGGGACAAACATTACGGGAACAAGGGAATGAGTTGTTTATGACGCAC
AAGGACTATGGCGCGGCTTTGGGGTGCTATGCGAGGGCAATGGAGGAGTT
GGCCCCGCGAGAGGGAAAGGGAGCACTGCGGATTGGCGCTGCAGTCCTAG
TCACTGCTGCGGCACCAGCACAAGGAGATGAGAGCAGCGGTAGCAGGAAA
AAGCAAATGGAAGTGAGACGCGCGACCCTGGCCGATGTGGACGAAAGATC
CCGAACAGTGGATGTACTCTTCGACGATAGCAGCAGCAGCAACAGTAGCA
GTAGCAGAGCCCACGGAAACGGACAAGAGAAAGACGACGAGGACGGAGAA
GAAGAAGACGATGTCCCCATTTCCCGCCTTCTGCCCCTCGCCCTCCTTCC
CTCCCTCCAAGTAGCCCAGGTCAAGGTCCTCTTGAACAGCGCTCGGTGTT
ATTTGAAGAGTCACATGGGCCGTCTGTCCGAGGCCTTGATGAGTGTCTCA
TTGGCGATAGCGGTGCTGCAGCCATTTGTTTTCCCCAAGACGGGAGAAGG
GGAGAAATGCGGGGAGGGAAAGGGGGAGGAGGTGGGGGTCGAGGAATGGA
GACGACTGCTGGTGCTGGCATATGAGATACGGTCCAAAGCGCTGAGTAAA
GGAGGTGAGTTTTCCTTGGCCAGACTAGACGCTCGACGCATCTTGCAGGT
AGCGGCGCGGCTGCAGACGCAAGAAAAGGGAGGAGGAGGAGGAGGGGGAG
GAGTGACGGCGGCGGCGTTGCGGGAGAAGGTGAAGGGCTTGGCGGAGGAA
ATTGAGAGGGAGGCGAAGAGGCGGGAGATGGCTGATAAACGATTGCTTAA
ATCGATGACGCGATGGATCAATACTGCCATGGAGAGTGGGGGGGGAAGCG
GAGGAGGTGGAGGAGGAGGGGAGGGGAGGGGGGGGGAGAGGGGAGGGAGT
ACCGGCGATAGTGGTGGTGATAGGGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGAAGAAAAGGAAGAGTGCAGCGTCGGCTAA
back to top
Synonyms
Publications