NO09G00200, NO09G00200 (gene) Nannochloropsis oceanica

Overview
NameNO09G00200
Unique NameNO09G00200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length794
Alignment locationchr9:111497..112290 -

Link to JBrowse

Properties
Property NameValue
DescriptionNADH-ubiquinone reductase complex 1 MLRQ subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:111497..112290 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010530B12D
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO09G00200 vs. NCBI_GenBank
Match: EWM27784.1 (NADH-ubiquinone reductase complex 1 MLRQ subunit [Nannochloropsis gaditana])

HSP 1 Score: 120.2 bits (300), Expect = 3.800e-24
Identity = 62/104 (59.62%), Postives = 74/104 (71.15%), Query Frame = 0 
Query:    1 MLSRVFTSAMRPA-----VQQTRANATRMATSIRHKGTAPLQSHYGGKPKGFKETWLMDGATYPIIVIITFAVTMCSSFTAYKFFNSPDNRVDPRKRSTLLRDW 100
            M SR+FTSA+RPA            A RM + +R + +      Y  + K FK+TWLMDGATYPIIVIITFAVTMCS FTAYKF +SPDNRVDPRKR++L+RDW
Sbjct:   36 MHSRIFTSAIRPAFLPAGTLSLTGPAARMGSVVRQQSSTRSPVQYSSR-KNFKQTWLMDGATYPIIVIITFAVTMCSGFTAYKFLHSPDNRVDPRKRTSLMRDW 138
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BLAST of NO09G00200 vs. NCBI_GenBank
Match: EJK58923.1 (hypothetical protein THAOC_20913 [Thalassiosira oceanica])

HSP 1 Score: 64.3 bits (155), Expect = 2.500e-7
Identity = 31/80 (38.75%), Postives = 44/80 (55.00%), Query Frame = 0 
Query:   25 ATSIRHKGTAPLQSH-YGGKPKGF----KETWLMDGATYPIIVIITFAVTMCSSFTAYKFFNSPDNRVDPRKRSTLLRDW 100
            AT  +    A  ++H + G PK      +  WL D   YP+++++TFA TMC  F  Y  +NSPD R+ P +R  LLR W
Sbjct:   57 ATMAKRTFAAESRAHLHLGMPKNADQLKRSIWLSDPGAYPVMIVVTFACTMCCGFMGYHTYNSPDVRITPGRRQVLLRTW 136
The following BLAST results are available for this feature:
BLAST of NO09G00200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM27784.13.800e-2459.62NADH-ubiquinone reductase complex 1 MLRQ subunit [... [more]
EJK58923.12.500e-738.75hypothetical protein THAOC_20913 [Thalassiosira oc... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G00200.1NO09G00200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589488gene_4537Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G00200.1NO09G00200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G00200 ID=NO09G00200|Name=NO09G00200|organism=Nannochloropsis oceanica|type=gene|length=794bp
ATGCTCAGCCGCGTCTTCACCTCGGCCATGCGCCCCGCTGTCCAACAAAC
ACGCGCCAATGCCACACGgtaagactcgagcgaggcagtacgaatatgtc
ccgccatatggtggctgattcacgtccccccacacatcctaacctctcta
caccccagCATGGCCACCTCTATCCGACACAAGGGAACAGCACCGCTGCA
GTCACACTACGGCGGGAAGCCGAAGGGATTTAAGGAGgtaagggatgttg
acaatggttggtggatggatagggaggcgatgagggcacagggtgggggg
ggtggaatctcttggtcctagcgcacgagtcgtcccttcctctctcctct
ggcaaggggactggagactgatggccgcatcaagctgtgtatgactcagg
cgctttctcttatcttaccctccctccctccctccctttctccctcccta
atactcctcctccttttagACCTGGCTGATGGACGGCGCAACCTATCCCA
TCATCGTCATCATCACATTCGCCGTCACCATGTGCAGCAGTTTCACGGCg
taagtgtgtgtgtatttgtgtgtgtgttcccatgaaagaaatcggtagac
tggtgtaagggccggcctttcaactccctcccctccccttcattcctcct
tcatgtcctcctcttattgccctctctctcctttcctccgtccgtcgctc
cctccattaaaatagTTATAAATTCTTCAATTCGCCTGACAACCGCGTCG
ATCCCCGCAAGCGCTCGACCCTCCTTCGTGACTGGACCAAATAG
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protein sequence of NO09G00200.1

>NO09G00200.1-protein ID=NO09G00200.1-protein|Name=NO09G00200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MLSRVFTSAMRPAVQQTRANATRMATSIRHKGTAPLQSHYGGKPKGFKET
WLMDGATYPIIVIITFAVTMCSSFTAYKFFNSPDNRVDPRKRSTLLRDWT
K*
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Synonyms
Publications