NO09G00200.1, NO09G00200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00200.1
Unique NameNO09G00200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length306
Alignment locationchr9:111497..112290 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:111497..112290 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G00200.1 vs.
Match: EWM27784.1 (NADH-ubiquinone reductase complex 1 MLRQ subunit [Nannochloropsis gaditana])

HSP 1 Score: 120.2 bits (300), Expect = 3.800e-24
Identity = 62/104 (59.62%), Postives = 74/104 (71.15%), Query Frame = 0
Query:    1 MLSRVFTSAMRPA-----VQQTRANATRMATSIRHKGTAPLQSHYGGKPKGFKETWLMDGATYPIIVIITFAVTMCSSFTAYKFFNSPDNRVDPRKRSTLLRDW 100
            M SR+FTSA+RPA            A RM + +R + +      Y  + K FK+TWLMDGATYPIIVIITFAVTMCS FTAYKF +SPDNRVDPRKR++L+RDW
Sbjct:   36 MHSRIFTSAIRPAFLPAGTLSLTGPAARMGSVVRQQSSTRSPVQYSSR-KNFKQTWLMDGATYPIIVIITFAVTMCSGFTAYKFLHSPDNRVDPRKRTSLMRDW 138          
The following BLAST results are available for this feature:
BLAST of NO09G00200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27784.13.800e-2459.62NADH-ubiquinone reductase complex 1 MLRQ subunit [... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00200NO09G00200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00200.1NO09G00200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00200.1.cds1NO09G00200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00200.1.cds2NO09G00200.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00200.1.cds3NO09G00200.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00200.1.cds4NO09G00200.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00200.1 ID=NO09G00200.1|Name=NO09G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=306bp
ATGCTCAGCCGCGTCTTCACCTCGGCCATGCGCCCCGCTGTCCAACAAAC
ACGCGCCAATGCCACACGCATGGCCACCTCTATCCGACACAAGGGAACAG
CACCGCTGCAGTCACACTACGGCGGGAAGCCGAAGGGATTTAAGGAGACC
TGGCTGATGGACGGCGCAACCTATCCCATCATCGTCATCATCACATTCGC
CGTCACCATGTGCAGCAGTTTCACGGCTTATAAATTCTTCAATTCGCCTG
ACAACCGCGTCGATCCCCGCAAGCGCTCGACCCTCCTTCGTGACTGGACC
AAATAG
back to top

protein sequence of NO09G00200.1

>NO09G00200.1-protein ID=NO09G00200.1-protein|Name=NO09G00200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MLSRVFTSAMRPAVQQTRANATRMATSIRHKGTAPLQSHYGGKPKGFKET
WLMDGATYPIIVIITFAVTMCSSFTAYKFFNSPDNRVDPRKRSTLLRDWT
K*
back to top

mRNA from alignment at chr9:111497..112290-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00200.1 ID=NO09G00200.1|Name=NO09G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=794bp|location=Sequence derived from alignment at chr9:111497..112290- (Nannochloropsis oceanica)
ATGCTCAGCCGCGTCTTCACCTCGGCCATGCGCCCCGCTGTCCAACAAAC ACGCGCCAATGCCACACGGTAAGACTCGAGCGAGGCAGTACGAATATGTC CCGCCATATGGTGGCTGATTCACGTCCCCCCACACATCCTAACCTCTCTA CACCCCAGCATGGCCACCTCTATCCGACACAAGGGAACAGCACCGCTGCA GTCACACTACGGCGGGAAGCCGAAGGGATTTAAGGAGGTAAGGGATGTTG ACAATGGTTGGTGGATGGATAGGGAGGCGATGAGGGCACAGGGTGGGGGG GGTGGAATCTCTTGGTCCTAGCGCACGAGTCGTCCCTTCCTCTCTCCTCT GGCAAGGGGACTGGAGACTGATGGCCGCATCAAGCTGTGTATGACTCAGG CGCTTTCTCTTATCTTACCCTCCCTCCCTCCCTCCCTTTCTCCCTCCCTA ATACTCCTCCTCCTTTTAGACCTGGCTGATGGACGGCGCAACCTATCCCA TCATCGTCATCATCACATTCGCCGTCACCATGTGCAGCAGTTTCACGGCG TAAGTGTGTGTGTATTTGTGTGTGTGTTCCCATGAAAGAAATCGGTAGAC TGGTGTAAGGGCCGGCCTTTCAACTCCCTCCCCTCCCCTTCATTCCTCCT TCATGTCCTCCTCTTATTGCCCTCTCTCTCCTTTCCTCCGTCCGTCGCTC CCTCCATTAAAATAGTTATAAATTCTTCAATTCGCCTGACAACCGCGTCG ATCCCCGCAAGCGCTCGACCCTCCTTCGTGACTGGACCAAATAG
back to top

Coding sequence (CDS) from alignment at chr9:111497..112290-

>NO09G00200.1 ID=NO09G00200.1|Name=NO09G00200.1|organism=Nannochloropsis oceanica|type=CDS|length=306bp|location=Sequence derived from alignment at chr9:111497..112290- (Nannochloropsis oceanica)
ATGCTCAGCCGCGTCTTCACCTCGGCCATGCGCCCCGCTGTCCAACAAAC
ACGCGCCAATGCCACACGCATGGCCACCTCTATCCGACACAAGGGAACAG
CACCGCTGCAGTCACACTACGGCGGGAAGCCGAAGGGATTTAAGGAGACC
TGGCTGATGGACGGCGCAACCTATCCCATCATCGTCATCATCACATTCGC
CGTCACCATGTGCAGCAGTTTCACGGCTTATAAATTCTTCAATTCGCCTG
ACAACCGCGTCGATCCCCGCAAGCGCTCGACCCTCCTTCGTGACTGGACC
AAATAG
back to top
Synonyms
Publications