NO09G00080, NO09G00080 (gene) Nannochloropsis oceanica

Overview
NameNO09G00080
Unique NameNO09G00080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2895
Alignment locationchr9:50265..53159 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:50265..53159 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO09G00080 vs. NCBI_GenBank
Match: EWM27805.1 (hypothetical protein Naga_100149g11, partial [Nannochloropsis gaditana])

HSP 1 Score: 179.5 bits (454), Expect = 1.600e-41
Identity = 80/103 (77.67%), Postives = 90/103 (87.38%), Query Frame = 0 
Query:   59 MRVCSTFGTFIYAGSTVLATWALLTLAWSTSSEPTLTVDGMPTSVFMRMGPFGMKARVSQAGAPLYTADAFHWCSRTDPGPIFDEPTHQFAYCTFLTATQISG 162
            MR+CSTFGTF+YAGS VLA W+LL   WS S EP LTVDG+PTS+FMRMGPFGMKARVSQAG P+Y AD FHWCSRTDPGPIFDEP+HQ AYC+FLT +QI+G
Sbjct:    1 MRICSTFGTFLYAGSVVLAAWSLLIRGWSVSDEPYLTVDGLPTSIFMRMGPFGMKARVSQAGVPVYMADGFHWCSRTDPGPIFDEPSHQVAYCSFLTTSQIAG 103
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BLAST of NO09G00080 vs. NCBI_GenBank
Match: EWM27810.1 (hypothetical protein Naga_101609g2 [Nannochloropsis gaditana])

HSP 1 Score: 151.8 bits (382), Expect = 3.600e-33
Identity = 81/102 (79.41%), Postives = 82/102 (80.39%), Query Frame = 0 
Query:  208 GCVVSWVCLNQIAASDLDVTLPGADLYFGKSWFAMTVSSAIAFFAFCGTAHASRKERAKERAALRKNSRAEGYE-GAYSYDXXXXXXXXYKNDGMHAVVTNP 309
            GCVV+WVCLNQIAASDLDVT P AD YFGK WF MTVSSAIAFFAFCGTAHASRKERA ERAALRKNS A G E GAYSYD        YK DGM AVVTNP
Sbjct:   94 GCVVAWVCLNQIAASDLDVTFPDADFYFGKGWFGMTVSSAIAFFAFCGTAHASRKERAAERAALRKNSLAAGEEDGAYSYD---EGEEEYKMDGMQAVVTNP 192
The following BLAST results are available for this feature:
BLAST of NO09G00080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM27805.11.600e-4177.67hypothetical protein Naga_100149g11, partial [Nann... [more]
EWM27810.13.600e-3379.41hypothetical protein Naga_101609g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL118nonsL118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008374NSK008374Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G00080.1NO09G00080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589574gene_4554Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101609g2gene2749Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G00080.1NO09G00080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G00080 ID=NO09G00080|Name=NO09G00080|organism=Nannochloropsis oceanica|type=gene|length=2895bp
CTTATCAGTCCGCGAAGGACTCGCCTCAAGTGAGATAAAAAGTTGGGGAA
ACACAACGACCCTTTTGCTCTTCGAAGAGACACACAACGATGCTTGTTTA
TACCCGTACCGATAGCATTGGTTACTACAGATAGGATCATGGCTTGGCCG
GTTTATTTGATATCGATGGTCGCTTGTACTTTAACTGCAGAGACTGTGCC
TGCCCAAGGCCCTTCGCAAGACAAAAGAACAGCTGGCAACTTCACTTCTC
ACGCCGCACACAATGGCACAGGATCCGCCGACTTTCAACCCAGCAAGACA
CACACAGTAACCATGCGTGTTTGCAGCACCTTCGgtaagttttgggggtg
gtggttgttgaaagaggaatgcccttactcggccgacggaagcggccagg
ccatcgtgaccctctcttcagttcattgccaccaagtcgcgacaaccaca
ccttcccctttcaccttcacttccacagGCACTTTTATATACGCCGGCTC
CACTGTCCTCGCGACCTGGGCCCTCCTTACCCTGGgtacgtgatttcttc
gccggctgtggacctacgaatccgcgggagcgatttgttctattaccggt
catttcacccttccctccctcactccttccctctctcactccctccttcc
ctcccttccccagCCTGGTCTACCTCTAGTGAACCGACGCTGACCGTGGA
CGGAATGCCCACCTCCGTCTTCATGCGCATGGGTCCTTTCGGTATGAAGG
CTCGAGTCAGTCAGgtaacgagagagagggaaagagagaaggcggggtgg
tagggagagatgcatgaaaaggaaggagtggaaaacagatagagaggttg
tgggatagcattatgggagcggcgtgggcagaaattctcgctggtttctg
atccctccctccctccctccctgtcccccttccttcctattcatcccatc
ctccctcgctcctctcctcttcatttcagtatttcatgctcccccagctc
atttaactccactccctcccctgctcatttaaacttcactcctccccctt
tctctccttctttcgcccctctttccccccctaagGCGGGCGCGCCCCTG
TACACGGCCGACGCTTTTCACTGGTGCTCTCGCACGGACCCCGGGCCCAT
ATTCGACGAGCCCACGCACCAATTTGCCTACTGCACTTTTCTGACCGCCA
CACAGATTTCAGgtacagagggcaggagggcaggagggcaggagggaggg
agggaagggggctgtcggcctcgtagtacgaagtggatagagggaggaaa
aacaggagactcatcccttccctccttccctccctccctctctctcttct
tgtcctccataagGCGTCGTTTCTTGCGCTCTTGGCATGGCCGGCATCTT
CCTAGCCTTTCTCCTGGCGTGCAACAGCATCAAGAACAAGGAGCGGAAGC
ACGTGACAGGCCTGCTTGCTTCAGTCATGTTCTTCCAGTTCATCGGGGCC
TTGgtacgtgccctccctccctccctccccccctccctcgcgaacgccca
tgctccccctcgatcaaaagcgtcagctcatctctccctcccctcctcct
actcaaccccctccctccctccttccctccctccctccctccagGGCTGC
GTTGTCTCATGGGTCTGCCTGAATCAAATTGCGGCTTCGGACCTGGACGT
GACGCTCCCTGGTGCCGACCTCTACTTTGGCAAGAGCTGGTTTGCCATGA
CGGgtaggtcggatctccctccctccctccccccctccctccctcccttc
ctccctcccttcctccctcccttccccaccccccccccttgcctccctcc
cttcctcccttctgtcctctctttttctcgctctcgctccctccctccca
ccccgcctccttctctctctttttcctctctcgctctatggcgctgcatc
cgtcttcccactaatttcctccctccctccctccgtctcatccctatccc
cctctcgcccttccgtccctcattctcaagcacgttggccccctccctct
ctgacgctaacccctccctccctccctccctccctccctagTCTCGAGCG
CCATTGCCTTCTTCGCCTTTTGCGGCACGGCCCATGCTTCGCGGAAAGAG
CGCGCGAAGGAACGGGCCGCCCTCCGAAAGAACAGCAGGGCAGAGGGATA
CGAGGGAGCTTACAGCTACGACGACCAGGAGGAGGAGGAGGAGGAGTACA
AAAACGATGGGATGCACGCGGTCGTGACGAACCCCTAGAGGGAGGGAGGG
AGGGAGTGAGGGAGGGAGGGAGGGAGGAGAGGTGAAGTGGAGCGTGGCCT
TTTGAAGATGAAAGGATGAGGAGGGAAGGAAGGAGGAAGGGAAGTAGGGA
AGGAAGGAGGGACGGAAGCAGGGACAGAAGACTCCTGTCGTGTCCTTGCG
TCCTTCTTTTGGAGCGTATACTCTTCCATATCCAATGGTGCGTGCGGACT
GAAGGGATGAAGGAGGAGGGAGGGGAGGAAGGGGAGGAGGAGGAGGAGGA
GGAAGAAGTAGGGGAGGAGGAACACTGCGAGCGGCAGCGTCAGAAAGGGT
TTTGGCGCCATCGTTTGAAGGAAATCTGAGCACGTAGGGAGGGAGGGAAG
GAGGAAGGGAAATAGGGAATGAGCTGAAAGACAGAGTTCAGCGACAAACG
TACATACATCCATACATAGGAGGAGAAAATGCTTAAGTCCAAAAGAAGAG
AAAACGGATACTCCCTCCAGGGAGAAAGAGAAGGAGGGAAGGAGAAAGGG
AGGGGAGTCTGCGGACACGGTGCAACCATTGGTGATGATAAAGGGGTGGG
GAGAAAAACAGAAAACACAGTCAATTAATTAAAATAACTTCGTGA
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protein sequence of NO09G00080.1

>NO09G00080.1-protein ID=NO09G00080.1-protein|Name=NO09G00080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=309bp
MAWPVYLISMVACTLTAETVPAQGPSQDKRTAGNFTSHAAHNGTGSADFQ
PSKTHTVTMRVCSTFGTFIYAGSTVLATWALLTLAWSTSSEPTLTVDGMP
TSVFMRMGPFGMKARVSQAGAPLYTADAFHWCSRTDPGPIFDEPTHQFAY
CTFLTATQISGVVSCALGMAGIFLAFLLACNSIKNKERKHVTGLLASVMF
FQFIGALGCVVSWVCLNQIAASDLDVTLPGADLYFGKSWFAMTVSSAIAF
FAFCGTAHASRKERAKERAALRKNSRAEGYEGAYSYDDQEEEEEEYKNDG
MHAVVTNP*
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Synonyms
Publications