NO09G00080.1, NO09G00080.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO09G00080.1
Unique Name	NO09G00080.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1672
Alignment location	chr9:50265..53159 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr9	genome	chr9:50265..53159 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO09G00080.1 vs.
Match: EWM27805.1 (hypothetical protein Naga_100149g11, partial [Nannochloropsis gaditana])

HSP 1 Score: 179.5 bits (454), Expect = 1.600e-41
Identity = 80/103 (77.67%), Postives = 90/103 (87.38%), Query Frame = 0

Query:   59 MRVCSTFGTFIYAGSTVLATWALLTLAWSTSSEPTLTVDGMPTSVFMRMGPFGMKARVSQAGAPLYTADAFHWCSRTDPGPIFDEPTHQFAYCTFLTATQISG 162
            MR+CSTFGTF+YAGS VLA W+LL   WS S EP LTVDG+PTS+FMRMGPFGMKARVSQAG P+Y AD FHWCSRTDPGPIFDEP+HQ AYC+FLT +QI+G
Sbjct:    1 MRICSTFGTFLYAGSVVLAAWSLLIRGWSVSDEPYLTVDGLPTSIFMRMGPFGMKARVSQAGVPVYMADGFHWCSRTDPGPIFDEPSHQVAYCSFLTTSQIAG 103

The following BLAST results are available for this feature:

BLAST of NO09G00080.1 vs.

BLAST of NO09G00080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27805.1	1.600e-41	77.67	hypothetical protein Naga_100149g11, partial [Nann...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO09G00080	NO09G00080	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO09G00080.1	NO09G00080.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO09G00080.1.cds1	NO09G00080.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO09G00080.1.cds2	NO09G00080.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO09G00080.1.cds3	NO09G00080.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO09G00080.1.cds4	NO09G00080.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO09G00080.1.cds5	NO09G00080.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO09G00080.1.cds6	NO09G00080.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO09G00080.1.cds7	NO09G00080.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr9:50265..53159-
coding sequence from alignment at chr9:50265..53159-

mRNA sequence

>NO09G00080.1 ID=NO09G00080.1|Name=NO09G00080.1|organism=Nannochloropsis oceanica|type=mRNA|length=1672bp
CTTATCAGTCCGCGAAGGACTCGCCTCAAGTGAGATAAAAAGTTGGGGAA
ACACAACGACCCTTTTGCTCTTCGAAGAGACACACAACGATGCTTGTTTA
TACCCGTACCGATAGCATTGGTTACTACAGATAGGATCATGGCTTGGCCG
GTTTATTTGATATCGATGGTCGCTTGTACTTTAACTGCAGAGACTGTGCC
TGCCCAAGGCCCTTCGCAAGACAAAAGAACAGCTGGCAACTTCACTTCTC
ACGCCGCACACAATGGCACAGGATCCGCCGACTTTCAACCCAGCAAGACA
CACACAGTAACCATGCGTGTTTGCAGCACCTTCGGCACTTTTATATACGC
CGGCTCCACTGTCCTCGCGACCTGGGCCCTCCTTACCCTGGCCTGGTCTA
CCTCTAGTGAACCGACGCTGACCGTGGACGGAATGCCCACCTCCGTCTTC
ATGCGCATGGGTCCTTTCGGTATGAAGGCTCGAGTCAGTCAGGCGGGCGC
GCCCCTGTACACGGCCGACGCTTTTCACTGGTGCTCTCGCACGGACCCCG
GGCCCATATTCGACGAGCCCACGCACCAATTTGCCTACTGCACTTTTCTG
ACCGCCACACAGATTTCAGGCGTCGTTTCTTGCGCTCTTGGCATGGCCGG
CATCTTCCTAGCCTTTCTCCTGGCGTGCAACAGCATCAAGAACAAGGAGC
GGAAGCACGTGACAGGCCTGCTTGCTTCAGTCATGTTCTTCCAGTTCATC
GGGGCCTTGGGCTGCGTTGTCTCATGGGTCTGCCTGAATCAAATTGCGGC
TTCGGACCTGGACGTGACGCTCCCTGGTGCCGACCTCTACTTTGGCAAGA
GCTGGTTTGCCATGACGGTCTCGAGCGCCATTGCCTTCTTCGCCTTTTGC
GGCACGGCCCATGCTTCGCGGAAAGAGCGCGCGAAGGAACGGGCCGCCCT
CCGAAAGAACAGCAGGGCAGAGGGATACGAGGGAGCTTACAGCTACGACG
ACCAGGAGGAGGAGGAGGAGGAGTACAAAAACGATGGGATGCACGCGGTC
GTGACGAACCCCTAGAGGGAGGGAGGGAGGGAGTGAGGGAGGGAGGGAGG
GAGGAGAGGTGAAGTGGAGCGTGGCCTTTTGAAGATGAAAGGATGAGGAG
GGAAGGAAGGAGGAAGGGAAGTAGGGAAGGAAGGAGGGACGGAAGCAGGG
ACAGAAGACTCCTGTCGTGTCCTTGCGTCCTTCTTTTGGAGCGTATACTC
TTCCATATCCAATGGTGCGTGCGGACTGAAGGGATGAAGGAGGAGGGAGG
GGAGGAAGGGGAGGAGGAGGAGGAGGAGGAAGAAGTAGGGGAGGAGGAAC
ACTGCGAGCGGCAGCGTCAGAAAGGGTTTTGGCGCCATCGTTTGAAGGAA
ATCTGAGCACGTAGGGAGGGAGGGAAGGAGGAAGGGAAATAGGGAATGAG
CTGAAAGACAGAGTTCAGCGACAAACGTACATACATCCATACATAGGAGG
AGAAAATGCTTAAGTCCAAAAGAAGAGAAAACGGATACTCCCTCCAGGGA
GAAAGAGAAGGAGGGAAGGAGAAAGGGAGGGGAGTCTGCGGACACGGTGC
AACCATTGGTGATGATAAAGGGGTGGGGAGAAAAACAGAAAACACAGTCA
ATTAATTAAAATAACTTCGTGA

protein sequence of NO09G00080.1

>NO09G00080.1-protein ID=NO09G00080.1-protein|Name=NO09G00080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=309bp
MAWPVYLISMVACTLTAETVPAQGPSQDKRTAGNFTSHAAHNGTGSADFQ
PSKTHTVTMRVCSTFGTFIYAGSTVLATWALLTLAWSTSSEPTLTVDGMP
TSVFMRMGPFGMKARVSQAGAPLYTADAFHWCSRTDPGPIFDEPTHQFAY
CTFLTATQISGVVSCALGMAGIFLAFLLACNSIKNKERKHVTGLLASVMF
FQFIGALGCVVSWVCLNQIAASDLDVTLPGADLYFGKSWFAMTVSSAIAF
FAFCGTAHASRKERAKERAALRKNSRAEGYEGAYSYDDQEEEEEEYKNDG
MHAVVTNP*

mRNA from alignment at chr9:50265..53159-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO09G00080.1 ID=NO09G00080.1|Name=NO09G00080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2895bp|location=Sequence derived from alignment at chr9:50265..53159- (Nannochloropsis oceanica)
CTTATCAGTCCGCGAAGGACTCGCCTCAAGTGAGATAAAAAGTTGGGGAA
ACACAACGACCCTTTTGCTCTTCGAAGAGACACACAACGATGCTTGTTTA
TACCCGTACCGATAGCATTGGTTACTACAGATAGGATCATGGCTTGGCCG
GTTTATTTGATATCGATGGTCGCTTGTACTTTAACTGCAGAGACTGTGCC
TGCCCAAGGCCCTTCGCAAGACAAAAGAACAGCTGGCAACTTCACTTCTC
ACGCCGCACACAATGGCACAGGATCCGCCGACTTTCAACCCAGCAAGACA
CACACAGTAACCATGCGTGTTTGCAGCACCTTCGGTAAGTTTTGGGGGTG
GTGGTTGTTGAAAGAGGAATGCCCTTACTCGGCCGACGGAAGCGGCCAGG
CCATCGTGACCCTCTCTTCAGTTCATTGCCACCAAGTCGCGACAACCACA
CCTTCCCCTTTCACCTTCACTTCCACAGGCACTTTTATATACGCCGGCTC
CACTGTCCTCGCGACCTGGGCCCTCCTTACCCTGGGTACGTGATTTCTTC
GCCGGCTGTGGACCTACGAATCCGCGGGAGCGATTTGTTCTATTACCGGT
CATTTCACCCTTCCCTCCCTCACTCCTTCCCTCTCTCACTCCCTCCTTCC
CTCCCTTCCCCAGCCTGGTCTACCTCTAGTGAACCGACGCTGACCGTGGA
CGGAATGCCCACCTCCGTCTTCATGCGCATGGGTCCTTTCGGTATGAAGG
CTCGAGTCAGTCAGGTAACGAGAGAGAGGGAAAGAGAGAAGGCGGGGTGG
TAGGGAGAGATGCATGAAAAGGAAGGAGTGGAAAACAGATAGAGAGGTTG
TGGGATAGCATTATGGGAGCGGCGTGGGCAGAAATTCTCGCTGGTTTCTG
ATCCCTCCCTCCCTCCCTCCCTGTCCCCCTTCCTTCCTATTCATCCCATC
CTCCCTCGCTCCTCTCCTCTTCATTTCAGTATTTCATGCTCCCCCAGCTC
ATTTAACTCCACTCCCTCCCCTGCTCATTTAAACTTCACTCCTCCCCCTT
TCTCTCCTTCTTTCGCCCCTCTTTCCCCCCCTAAGGCGGGCGCGCCCCTG
TACACGGCCGACGCTTTTCACTGGTGCTCTCGCACGGACCCCGGGCCCAT
ATTCGACGAGCCCACGCACCAATTTGCCTACTGCACTTTTCTGACCGCCA
CACAGATTTCAGGTACAGAGGGCAGGAGGGCAGGAGGGCAGGAGGGAGGG
AGGGAAGGGGGCTGTCGGCCTCGTAGTACGAAGTGGATAGAGGGAGGAAA
AACAGGAGACTCATCCCTTCCCTCCTTCCCTCCCTCCCTCTCTCTCTTCT
TGTCCTCCATAAGGCGTCGTTTCTTGCGCTCTTGGCATGGCCGGCATCTT
CCTAGCCTTTCTCCTGGCGTGCAACAGCATCAAGAACAAGGAGCGGAAGC
ACGTGACAGGCCTGCTTGCTTCAGTCATGTTCTTCCAGTTCATCGGGGCC
TTGGTACGTGCCCTCCCTCCCTCCCTCCCCCCCTCCCTCGCGAACGCCCA
TGCTCCCCCTCGATCAAAAGCGTCAGCTCATCTCTCCCTCCCCTCCTCCT
ACTCAACCCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCAGGGCTGC
GTTGTCTCATGGGTCTGCCTGAATCAAATTGCGGCTTCGGACCTGGACGT
GACGCTCCCTGGTGCCGACCTCTACTTTGGCAAGAGCTGGTTTGCCATGA
CGGGTAGGTCGGATCTCCCTCCCTCCCTCCCCCCCTCCCTCCCTCCCTTC
CTCCCTCCCTTCCTCCCTCCCTTCCCCACCCCCCCCCCTTGCCTCCCTCC
CTTCCTCCCTTCTGTCCTCTCTTTTTCTCGCTCTCGCTCCCTCCCTCCCA
CCCCGCCTCCTTCTCTCTCTTTTTCCTCTCTCGCTCTATGGCGCTGCATC
CGTCTTCCCACTAATTTCCTCCCTCCCTCCCTCCGTCTCATCCCTATCCC
CCTCTCGCCCTTCCGTCCCTCATTCTCAAGCACGTTGGCCCCCTCCCTCT
CTGACGCTAACCCCTCCCTCCCTCCCTCCCTCCCTCCCTAGTCTCGAGCG
CCATTGCCTTCTTCGCCTTTTGCGGCACGGCCCATGCTTCGCGGAAAGAG
CGCGCGAAGGAACGGGCCGCCCTCCGAAAGAACAGCAGGGCAGAGGGATA
CGAGGGAGCTTACAGCTACGACGACCAGGAGGAGGAGGAGGAGGAGTACA
AAAACGATGGGATGCACGCGGTCGTGACGAACCCCTAGAGGGAGGGAGGG
AGGGAGTGAGGGAGGGAGGGAGGGAGGAGAGGTGAAGTGGAGCGTGGCCT
TTTGAAGATGAAAGGATGAGGAGGGAAGGAAGGAGGAAGGGAAGTAGGGA
AGGAAGGAGGGACGGAAGCAGGGACAGAAGACTCCTGTCGTGTCCTTGCG
TCCTTCTTTTGGAGCGTATACTCTTCCATATCCAATGGTGCGTGCGGACT
GAAGGGATGAAGGAGGAGGGAGGGGAGGAAGGGGAGGAGGAGGAGGAGGA
GGAAGAAGTAGGGGAGGAGGAACACTGCGAGCGGCAGCGTCAGAAAGGGT
TTTGGCGCCATCGTTTGAAGGAAATCTGAGCACGTAGGGAGGGAGGGAAG
GAGGAAGGGAAATAGGGAATGAGCTGAAAGACAGAGTTCAGCGACAAACG
TACATACATCCATACATAGGAGGAGAAAATGCTTAAGTCCAAAAGAAGAG
AAAACGGATACTCCCTCCAGGGAGAAAGAGAAGGAGGGAAGGAGAAAGGG
AGGGGAGTCTGCGGACACGGTGCAACCATTGGTGATGATAAAGGGGTGGG
GAGAAAAACAGAAAACACAGTCAATTAATTAAAATAACTTCGTGA

Coding sequence (CDS) from alignment at chr9:50265..53159-

>NO09G00080.1 ID=NO09G00080.1|Name=NO09G00080.1|organism=Nannochloropsis oceanica|type=CDS|length=927bp|location=Sequence derived from alignment at chr9:50265..53159- (Nannochloropsis oceanica)
ATGGCTTGGCCGGTTTATTTGATATCGATGGTCGCTTGTACTTTAACTGC
AGAGACTGTGCCTGCCCAAGGCCCTTCGCAAGACAAAAGAACAGCTGGCA
ACTTCACTTCTCACGCCGCACACAATGGCACAGGATCCGCCGACTTTCAA
CCCAGCAAGACACACACAGTAACCATGCGTGTTTGCAGCACCTTCGGCAC
TTTTATATACGCCGGCTCCACTGTCCTCGCGACCTGGGCCCTCCTTACCC
TGGCCTGGTCTACCTCTAGTGAACCGACGCTGACCGTGGACGGAATGCCC
ACCTCCGTCTTCATGCGCATGGGTCCTTTCGGTATGAAGGCTCGAGTCAG
TCAGGCGGGCGCGCCCCTGTACACGGCCGACGCTTTTCACTGGTGCTCTC
GCACGGACCCCGGGCCCATATTCGACGAGCCCACGCACCAATTTGCCTAC
TGCACTTTTCTGACCGCCACACAGATTTCAGGCGTCGTTTCTTGCGCTCT
TGGCATGGCCGGCATCTTCCTAGCCTTTCTCCTGGCGTGCAACAGCATCA
AGAACAAGGAGCGGAAGCACGTGACAGGCCTGCTTGCTTCAGTCATGTTC
TTCCAGTTCATCGGGGCCTTGGGCTGCGTTGTCTCATGGGTCTGCCTGAA
TCAAATTGCGGCTTCGGACCTGGACGTGACGCTCCCTGGTGCCGACCTCT
ACTTTGGCAAGAGCTGGTTTGCCATGACGGTCTCGAGCGCCATTGCCTTC
TTCGCCTTTTGCGGCACGGCCCATGCTTCGCGGAAAGAGCGCGCGAAGGA
ACGGGCCGCCCTCCGAAAGAACAGCAGGGCAGAGGGATACGAGGGAGCTT
ACAGCTACGACGACCAGGAGGAGGAGGAGGAGGAGTACAAAAACGATGGG
ATGCACGCGGTCGTGACGAACCCCTAG

Synonyms

Publications