NO09G00070, NO09G00070 (gene) Nannochloropsis oceanica

Overview
NameNO09G00070
Unique NameNO09G00070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2731
Alignment locationchr9:47343..50073 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:47343..50073 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO09G00070 vs. NCBI_GenBank
Match: EWM27811.1 (hypothetical protein Naga_101186g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 87.4 bits (215), Expect = 1.500e-13
Identity = 138/329 (41.95%), Postives = 160/329 (48.63%), Query Frame = 0 
Query:   28 SLADEQEILAGLEEELGCLSSGAPSPLSGPSLSSSQPLNNVHPNNNGSNGDVDGSLLLPPSCIQDQPGKRGDSSGEG-EGVGEADDALRQAADLLLEEGGHDDQILSIASSASSTALAGLGEERRLXXXXXXXXXXXXXGGSLCGDSHSLENGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKITMSLRPPRQRRAFDGYETSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPSATPFNSAVCKKRLYGPGRGRWKRRRFEGNGSMDDFTSEV 356
            SL +EQEILA L EELG LSSGAPSPL GP  S+  P +    ++   N  + G                        EG  +  D       LL  E   +D+        +S+ +  L +   +             GG    D   L+                                   R ITMSLRPPRQRR +DG+ TS+   XXXXXXXXXXXXXXXXXXXXXXX                      XXXXXXXXXXXXXXXXXXXXXXXX        +  PFNSAVCKKRLYGPGRGRWKRRRF+GNG +DD+TSEV
Sbjct:    6 SLTEEQEILAELAEELGSLSSGAPSPLGGPVSSARIPNHTAVEDSTNGNHVISGHXXXXXXXXXXXXXXXXXXXXXXLEGPADTGDLHDLEDPLLTTERKSEDESAFPFHPPASSGVRLLDDVEGV----------DGEGGHKEEDEKGLQ---VLGDLPESGIGRGKDEALLASKGKATVPEVPQRMITMSLRPPRQRRRYDGFATSLQGKXXXXXXXXXXXXXXXXXXXXXXXRNGQPVRGETSSAAVRGGRSGGXXXXXXXXXXXXXXXXXXXXXXXXMHL-----TQQPFNSAVCKKRLYGPGRGRWKRRRFDGNGFIDDYTSEV 316
The following BLAST results are available for this feature:
BLAST of NO09G00070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27811.11.500e-1341.95hypothetical protein Naga_101186g2, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL118nonsL118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008376NSK008376Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G00070.1NO09G00070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_101186g2gene2747Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G00070.1NO09G00070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G00070 ID=NO09G00070|Name=NO09G00070|organism=Nannochloropsis oceanica|type=gene|length=2731bp
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTCCTCTTCCCTCTTCCT
TTTCCTCTTCCTTTCTCATTGCTATTGTTCACGCGAAGAAGGAGAGTGAG
ATGGTCACCCCCGCCCGCCGTCTATTCTTACTTTGTCACGACCATGGCTT
TCTCATTCTATACATCACCTCTGCCTATGCACTGTGTCAGCAGAGCATGA
GACCAGCCCCACCCACAAGCGCGGCAGGAGAAAATAAACCCCCACTCCCA
AGCAGCCGACGACAACCGACGCATATCCTTCTTTATTCCAGCCTCCCATG
CGACCAAGACATGCACCACATAGTGGCGGCACAATAAACCACTCACACCA
CACCCGCCATCCATTCCCAATAGTCATGTCCCTGGCGGATGAGCAAGAGA
TATTGGCGGGCTTGGAAGAGGAACTTGGATGCTTGTCTTCCGGGGCGCCT
TCGCCCTTAAGCGGCCCCTCTCTCAGTAGCAGCCAACCGCTGAACAACGT
CCACCCAAACAACAACGGAAGCAATGGTGACGTCGATGGCAGCCTCTTGC
TGCCTCCGTCGTGCATACAGGATCAGCCTGGGAAGCGAGGTGACAGCAGC
GGAGAAGGGGAGGGAGTGGGGGAGGCAGACGATGCGCTGCGGCAGGCGGC
AGACTTGTTGCTGGAGGAGGGTGGGCACGACGACCAAATATTATCGATCG
CCTCGTCGGCTTCCAGCACCGCCTTGGCAGGGCTGGGGGAGGAAAGAAGG
TTAGGAGAAGGAGAAGAGAAGGAGGATGGCGAGAGAGAAGAAGGGGGAAG
CCTTTGTGGAGACTCACATAGCCTGGAGAATGGGAGCGGGGGAAATGGAA
TAGGAAAAGGCAAAGGCAACAGCTTAATGGCGTCGAAATCGACGGTTCCT
GTGCCTCCTCGTCCTCCTCCGCAGCCGTCAACACGCAAGATCACCATGTC
GTTGCGGCCCCCTCGACAACGACGGGCGTTTGACGGGTATGAGACTTCGA
TGAATGGAGGGGGAGGGGAGGACGAGGATGAGGACGAGGAGAACGATGAG
GGCAAGGACGGGAGCGGGCGACGATCTGGTCGATGTGGAAGCAGTGGTGG
GCGCTGGGGAGGTTCCTCGGCAGCGAGTCGGGGAGGGAGGAGTGGCGGGG
GAGGGAATCGCAGCGGTGGGGTGACTAGGAGCAACAGCAACAACAGCAGC
AGCAGCAGCAACAGCAACAGCAGTGCCAATGGGCCGGGACCTTCTGCAAC
GCCTTTCAATTCGGCCGTGTGCAAGAAGAGATTGTATGGCCCGGGGCGTG
GCCGGTGGAAGCGCCGCCGGTTTGAAGGCAATGGATCTATGGATGACTTT
ACGTCCGAGgtaagcacacccacacccacactcacactcacacacacaca
cacacacacacacacacacacacacacacacacacacacacacacacaca
cacacacacacacacacacacacacacacacacacacacacacacacaca
cacacacacacacacacacacacacacacacacgcgcgcgcgcgcgcatg
taatgtatatattctatttatacattacatatacgctcagggagaaaaga
caggcatgtccgccctgtggtcgaatttagacgcgatctcatcaccttcc
ccccccccccccccttccctccacccctccctcagGTCCTCCGCCTCCTC
CAAACCCGCGGCCCGCTCTCGTTCGACGACATCTACACCGCCCTGCCCCG
GCAGCTCCGAGTCTTTCCTCATGCCCCGCATTCCATCCAGAGCGTCCTGG
ACGTGCTCCGGGCAACCCCTCTCGTCAATCTCGTCCGGGAGGAGAAAGAC
AGgtaaaggagggaaggaaggagggaggggaggaaggcgggagggtaaga
aatctatcgtcggatctggcagtcttgatcgctcatctctcccttcctcc
ctcccgcccctcccccagCCCTCTTCTCTACACTTTTTTGGACGGCCATA
AGGTGCCCAAGCCCATCGAGATGGGGGGAGTGAAGGAGGAGTCTTCGACA
CTCGAGGAGACGGAGGACGAGCTCCGTCGACGGATTTCCCTCTTACGCGG
AGAGCTGGTGGCTTTAAAGGAGGGAGGGAAGGAGGAAGGAAGCGGGGGGA
GGAGGACGGCTTTGGAGGTGTTGACGAGGGTAATGGGTGAGGGGCCGGCG
GGAGGAGGGGAGGGAGGGGGGAGGGGGGCGGGAGAGCGCAAGGGAGCGGA
TGGCGGCGAATCCGATCTTCAGAGCGGCACTCCTGGCGTTGGGGGTGCAG
GTGTAGAGAGAGAGGGAGGGAGGGAGGGCAAGAGGGAGGGAAAGGAAGGA
GGAGCTGTGTCGAAGAAGGGAAAGAGGCAAGGAGAGAGGGAGGGAGAAGG
GGAGGGTGGACCACCCTTATCCCCACTTCTATTTTGACCCGTTAACCGTA
GGTTAGATTACTAGGAATAAAAGGAGAATGTAATTTAATCTTGATTACGG
GCAGTAAAGAAAGGTAAAGAAAGCTGCAAAGCAGATGAACCCCTCAATCT
CAAGTCTCAAGACCTTAATCCTCAAGTAATAATCCTAGGACTCCCGTGTA
ATCATCCAAGAATTGTAGCCCAACAGAAACGCAAGTATAAATAAAAGAAG
AGGGAGGGGGAAGAAGGAGAGAGGGTGGGAGTGAAAAGTAGAGAGTCAGA
CGAAGGGGAATCGTAGACAGCTTCTAGAGCT
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protein sequence of NO09G00070.1

>NO09G00070.1-protein ID=NO09G00070.1-protein|Name=NO09G00070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=566bp
MRPRHAPHSGGTINHSHHTRHPFPIVMSLADEQEILAGLEEELGCLSSGA
PSPLSGPSLSSSQPLNNVHPNNNGSNGDVDGSLLLPPSCIQDQPGKRGDS
SGEGEGVGEADDALRQAADLLLEEGGHDDQILSIASSASSTALAGLGEER
RLGEGEEKEDGEREEGGSLCGDSHSLENGSGGNGIGKGKGNSLMASKSTV
PVPPRPPPQPSTRKITMSLRPPRQRRAFDGYETSMNGGGGEDEDEDEEND
EGKDGSGRRSGRCGSSGGRWGGSSAASRGGRSGGGGNRSGGVTRSNSNNS
SSSSNSNSSANGPGPSATPFNSAVCKKRLYGPGRGRWKRRRFEGNGSMDD
FTSEVLRLLQTRGPLSFDDIYTALPRQLRVFPHAPHSIQSVLDVLRATPL
VNLVREEKDSPLLYTFLDGHKVPKPIEMGGVKEESSTLEETEDELRRRIS
LLRGELVALKEGGKEEGSGGRRTALEVLTRVMGEGPAGGGEGGGRGAGER
KGADGGESDLQSGTPGVGGAGVEREGGREGKREGKEGGAVSKKGKRQGER
EGEGEGGPPLSPLLF*
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Synonyms
Publications