NO09G00070.1, NO09G00070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00070.1
Unique NameNO09G00070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2289
Alignment locationchr9:47343..50073 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:47343..50073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G00070.1 vs.
Match: EWM27811.1 (hypothetical protein Naga_101186g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 176.4 bits (446), Expect = 2.500e-40
Identity = 160/343 (46.65%), Postives = 191/343 (55.69%), Query Frame = 0 
Query:   28 SLADEQEILAGLEEELGCLSSGAPSPLSGPSLSSSQPLNN-----------VHPNNNGSNGDVD----GSLLLPPSCIQDQPGKRGDSSGEGEGVGEADDALRQAADLLLEEGGHDDQILSIASSASSTALAGLGEERRLGEGEEKEDGEREEGGSLCGDSHSLENGSGGNGIGKGKGNSLMASKSTVPVPPRPPPQPSTRKITMSLRPPRQRRAFDGYETSMNGGGGEDEDEDEENDEGKDGSGRRSGRCGSSGGRWGGSSAASRGGRSGGGGNRSGGVTRSNSNNSSSSSNSNSSANGPGPSATPFNSAVCKKRLYGPGRGRWKRRRFEGNGSMDDFTSEV 356
            SL +EQEILA L EELG LSSGAPSPL GP  S+  P +            +  ++NGSN D D    GSLLLPP  ++  P   GD       + + +D L     L  E    D+        ASS        E   GEG  KE  E E+G  + GD          +GIG+GK  +L+ASK    VP  P      R ITMSLRPPRQRR +DG+ TS+ G   E+E E  E +EG++G G    R      R   SSAA RGGRSGGG  R  GV+RSNS +SS SSNS     G   +  PFNSAVCKKRLYGPGRGRWKRRRF+GNG +DD+TSEV
Sbjct:    6 SLTEEQEILAELAEELGSLSSGAPSPLGGPVSSARIPNHTAVEDSTNGNHVISGHSNGSNDDEDDEDGGSLLLPPPSLEG-PADTGD-------LHDLEDPL-----LTTERKSEDESAFPFHPPASSGVRLLDDVEGVDGEGGHKE--EDEKGLQVLGDLPE-------SGIGRGKDEALLASKGKATVPEVP-----QRMITMSLRPPRQRRRYDGFATSLQGKEEEEEGEG-EGEEGEEGRGGSRARRNGQPVRGETSSAAVRGGRSGGGVGRGSGVSRSNSVSSSGSSNS----GGMHLTQQPFNSAVCKKRLYGPGRGRWKRRRFDGNGFIDDYTSEV 316
The following BLAST results are available for this feature:
BLAST of NO09G00070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27811.12.500e-4046.65hypothetical protein Naga_101186g2, partial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00070NO09G00070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00070.1NO09G00070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00070.1.cds1NO09G00070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00070.1.cds2NO09G00070.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00070.1.cds3NO09G00070.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00070.1 ID=NO09G00070.1|Name=NO09G00070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2289bp
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTCCTCTTCCCTCTTCCT
TTTCCTCTTCCTTTCTCATTGCTATTGTTCACGCGAAGAAGGAGAGTGAG
ATGGTCACCCCCGCCCGCCGTCTATTCTTACTTTGTCACGACCATGGCTT
TCTCATTCTATACATCACCTCTGCCTATGCACTGTGTCAGCAGAGCATGA
GACCAGCCCCACCCACAAGCGCGGCAGGAGAAAATAAACCCCCACTCCCA
AGCAGCCGACGACAACCGACGCATATCCTTCTTTATTCCAGCCTCCCATG
CGACCAAGACATGCACCACATAGTGGCGGCACAATAAACCACTCACACCA
CACCCGCCATCCATTCCCAATAGTCATGTCCCTGGCGGATGAGCAAGAGA
TATTGGCGGGCTTGGAAGAGGAACTTGGATGCTTGTCTTCCGGGGCGCCT
TCGCCCTTAAGCGGCCCCTCTCTCAGTAGCAGCCAACCGCTGAACAACGT
CCACCCAAACAACAACGGAAGCAATGGTGACGTCGATGGCAGCCTCTTGC
TGCCTCCGTCGTGCATACAGGATCAGCCTGGGAAGCGAGGTGACAGCAGC
GGAGAAGGGGAGGGAGTGGGGGAGGCAGACGATGCGCTGCGGCAGGCGGC
AGACTTGTTGCTGGAGGAGGGTGGGCACGACGACCAAATATTATCGATCG
CCTCGTCGGCTTCCAGCACCGCCTTGGCAGGGCTGGGGGAGGAAAGAAGG
TTAGGAGAAGGAGAAGAGAAGGAGGATGGCGAGAGAGAAGAAGGGGGAAG
CCTTTGTGGAGACTCACATAGCCTGGAGAATGGGAGCGGGGGAAATGGAA
TAGGAAAAGGCAAAGGCAACAGCTTAATGGCGTCGAAATCGACGGTTCCT
GTGCCTCCTCGTCCTCCTCCGCAGCCGTCAACACGCAAGATCACCATGTC
GTTGCGGCCCCCTCGACAACGACGGGCGTTTGACGGGTATGAGACTTCGA
TGAATGGAGGGGGAGGGGAGGACGAGGATGAGGACGAGGAGAACGATGAG
GGCAAGGACGGGAGCGGGCGACGATCTGGTCGATGTGGAAGCAGTGGTGG
GCGCTGGGGAGGTTCCTCGGCAGCGAGTCGGGGAGGGAGGAGTGGCGGGG
GAGGGAATCGCAGCGGTGGGGTGACTAGGAGCAACAGCAACAACAGCAGC
AGCAGCAGCAACAGCAACAGCAGTGCCAATGGGCCGGGACCTTCTGCAAC
GCCTTTCAATTCGGCCGTGTGCAAGAAGAGATTGTATGGCCCGGGGCGTG
GCCGGTGGAAGCGCCGCCGGTTTGAAGGCAATGGATCTATGGATGACTTT
ACGTCCGAGGTCCTCCGCCTCCTCCAAACCCGCGGCCCGCTCTCGTTCGA
CGACATCTACACCGCCCTGCCCCGGCAGCTCCGAGTCTTTCCTCATGCCC
CGCATTCCATCCAGAGCGTCCTGGACGTGCTCCGGGCAACCCCTCTCGTC
AATCTCGTCCGGGAGGAGAAAGACAGCCCTCTTCTCTACACTTTTTTGGA
CGGCCATAAGGTGCCCAAGCCCATCGAGATGGGGGGAGTGAAGGAGGAGT
CTTCGACACTCGAGGAGACGGAGGACGAGCTCCGTCGACGGATTTCCCTC
TTACGCGGAGAGCTGGTGGCTTTAAAGGAGGGAGGGAAGGAGGAAGGAAG
CGGGGGGAGGAGGACGGCTTTGGAGGTGTTGACGAGGGTAATGGGTGAGG
GGCCGGCGGGAGGAGGGGAGGGAGGGGGGAGGGGGGCGGGAGAGCGCAAG
GGAGCGGATGGCGGCGAATCCGATCTTCAGAGCGGCACTCCTGGCGTTGG
GGGTGCAGGTGTAGAGAGAGAGGGAGGGAGGGAGGGCAAGAGGGAGGGAA
AGGAAGGAGGAGCTGTGTCGAAGAAGGGAAAGAGGCAAGGAGAGAGGGAG
GGAGAAGGGGAGGGTGGACCACCCTTATCCCCACTTCTATTTTGACCCGT
TAACCGTAGGTTAGATTACTAGGAATAAAAGGAGAATGTAATTTAATCTT
GATTACGGGCAGTAAAGAAAGGTAAAGAAAGCTGCAAAGCAGATGAACCC
CTCAATCTCAAGTCTCAAGACCTTAATCCTCAAGTAATAATCCTAGGACT
CCCGTGTAATCATCCAAGAATTGTAGCCCAACAGAAACGCAAGTATAAAT
AAAAGAAGAGGGAGGGGGAAGAAGGAGAGAGGGTGGGAGTGAAAAGTAGA
GAGTCAGACGAAGGGGAATCGTAGACAGCTTCTAGAGCT
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protein sequence of NO09G00070.1

>NO09G00070.1-protein ID=NO09G00070.1-protein|Name=NO09G00070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=566bp
MRPRHAPHSGGTINHSHHTRHPFPIVMSLADEQEILAGLEEELGCLSSGA
PSPLSGPSLSSSQPLNNVHPNNNGSNGDVDGSLLLPPSCIQDQPGKRGDS
SGEGEGVGEADDALRQAADLLLEEGGHDDQILSIASSASSTALAGLGEER
RLGEGEEKEDGEREEGGSLCGDSHSLENGSGGNGIGKGKGNSLMASKSTV
PVPPRPPPQPSTRKITMSLRPPRQRRAFDGYETSMNGGGGEDEDEDEEND
EGKDGSGRRSGRCGSSGGRWGGSSAASRGGRSGGGGNRSGGVTRSNSNNS
SSSSNSNSSANGPGPSATPFNSAVCKKRLYGPGRGRWKRRRFEGNGSMDD
FTSEVLRLLQTRGPLSFDDIYTALPRQLRVFPHAPHSIQSVLDVLRATPL
VNLVREEKDSPLLYTFLDGHKVPKPIEMGGVKEESSTLEETEDELRRRIS
LLRGELVALKEGGKEEGSGGRRTALEVLTRVMGEGPAGGGEGGGRGAGER
KGADGGESDLQSGTPGVGGAGVEREGGREGKREGKEGGAVSKKGKRQGER
EGEGEGGPPLSPLLF*
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mRNA from alignment at chr9:47343..50073+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00070.1 ID=NO09G00070.1|Name=NO09G00070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2731bp|location=Sequence derived from alignment at chr9:47343..50073+ (Nannochloropsis oceanica)
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTCCTCTTCCCTCTTCCT
TTTCCTCTTCCTTTCTCATTGCTATTGTTCACGCGAAGAAGGAGAGTGAG
ATGGTCACCCCCGCCCGCCGTCTATTCTTACTTTGTCACGACCATGGCTT
TCTCATTCTATACATCACCTCTGCCTATGCACTGTGTCAGCAGAGCATGA
GACCAGCCCCACCCACAAGCGCGGCAGGAGAAAATAAACCCCCACTCCCA
AGCAGCCGACGACAACCGACGCATATCCTTCTTTATTCCAGCCTCCCATG
CGACCAAGACATGCACCACATAGTGGCGGCACAATAAACCACTCACACCA
CACCCGCCATCCATTCCCAATAGTCATGTCCCTGGCGGATGAGCAAGAGA
TATTGGCGGGCTTGGAAGAGGAACTTGGATGCTTGTCTTCCGGGGCGCCT
TCGCCCTTAAGCGGCCCCTCTCTCAGTAGCAGCCAACCGCTGAACAACGT
CCACCCAAACAACAACGGAAGCAATGGTGACGTCGATGGCAGCCTCTTGC
TGCCTCCGTCGTGCATACAGGATCAGCCTGGGAAGCGAGGTGACAGCAGC
GGAGAAGGGGAGGGAGTGGGGGAGGCAGACGATGCGCTGCGGCAGGCGGC
AGACTTGTTGCTGGAGGAGGGTGGGCACGACGACCAAATATTATCGATCG
CCTCGTCGGCTTCCAGCACCGCCTTGGCAGGGCTGGGGGAGGAAAGAAGG
TTAGGAGAAGGAGAAGAGAAGGAGGATGGCGAGAGAGAAGAAGGGGGAAG
CCTTTGTGGAGACTCACATAGCCTGGAGAATGGGAGCGGGGGAAATGGAA
TAGGAAAAGGCAAAGGCAACAGCTTAATGGCGTCGAAATCGACGGTTCCT
GTGCCTCCTCGTCCTCCTCCGCAGCCGTCAACACGCAAGATCACCATGTC
GTTGCGGCCCCCTCGACAACGACGGGCGTTTGACGGGTATGAGACTTCGA
TGAATGGAGGGGGAGGGGAGGACGAGGATGAGGACGAGGAGAACGATGAG
GGCAAGGACGGGAGCGGGCGACGATCTGGTCGATGTGGAAGCAGTGGTGG
GCGCTGGGGAGGTTCCTCGGCAGCGAGTCGGGGAGGGAGGAGTGGCGGGG
GAGGGAATCGCAGCGGTGGGGTGACTAGGAGCAACAGCAACAACAGCAGC
AGCAGCAGCAACAGCAACAGCAGTGCCAATGGGCCGGGACCTTCTGCAAC
GCCTTTCAATTCGGCCGTGTGCAAGAAGAGATTGTATGGCCCGGGGCGTG
GCCGGTGGAAGCGCCGCCGGTTTGAAGGCAATGGATCTATGGATGACTTT
ACGTCCGAGGTAAGCACACCCACACCCACACTCACACTCACACACACACA
CACACACACACACACACACACACACACACACACACACACACACACACACA
CACACACACACACACACACACACACACACACACACACACACACACACACA
CACACACACACACACACACACACACACACACACGCGCGCGCGCGCGCATG
TAATGTATATATTCTATTTATACATTACATATACGCTCAGGGAGAAAAGA
CAGGCATGTCCGCCCTGTGGTCGAATTTAGACGCGATCTCATCACCTTCC
CCCCCCCCCCCCCCTTCCCTCCACCCCTCCCTCAGGTCCTCCGCCTCCTC
CAAACCCGCGGCCCGCTCTCGTTCGACGACATCTACACCGCCCTGCCCCG
GCAGCTCCGAGTCTTTCCTCATGCCCCGCATTCCATCCAGAGCGTCCTGG
ACGTGCTCCGGGCAACCCCTCTCGTCAATCTCGTCCGGGAGGAGAAAGAC
AGGTAAAGGAGGGAAGGAAGGAGGGAGGGGAGGAAGGCGGGAGGGTAAGA
AATCTATCGTCGGATCTGGCAGTCTTGATCGCTCATCTCTCCCTTCCTCC
CTCCCGCCCCTCCCCCAGCCCTCTTCTCTACACTTTTTTGGACGGCCATA
AGGTGCCCAAGCCCATCGAGATGGGGGGAGTGAAGGAGGAGTCTTCGACA
CTCGAGGAGACGGAGGACGAGCTCCGTCGACGGATTTCCCTCTTACGCGG
AGAGCTGGTGGCTTTAAAGGAGGGAGGGAAGGAGGAAGGAAGCGGGGGGA
GGAGGACGGCTTTGGAGGTGTTGACGAGGGTAATGGGTGAGGGGCCGGCG
GGAGGAGGGGAGGGAGGGGGGAGGGGGGCGGGAGAGCGCAAGGGAGCGGA
TGGCGGCGAATCCGATCTTCAGAGCGGCACTCCTGGCGTTGGGGGTGCAG
GTGTAGAGAGAGAGGGAGGGAGGGAGGGCAAGAGGGAGGGAAAGGAAGGA
GGAGCTGTGTCGAAGAAGGGAAAGAGGCAAGGAGAGAGGGAGGGAGAAGG
GGAGGGTGGACCACCCTTATCCCCACTTCTATTTTGACCCGTTAACCGTA
GGTTAGATTACTAGGAATAAAAGGAGAATGTAATTTAATCTTGATTACGG
GCAGTAAAGAAAGGTAAAGAAAGCTGCAAAGCAGATGAACCCCTCAATCT
CAAGTCTCAAGACCTTAATCCTCAAGTAATAATCCTAGGACTCCCGTGTA
ATCATCCAAGAATTGTAGCCCAACAGAAACGCAAGTATAAATAAAAGAAG
AGGGAGGGGGAAGAAGGAGAGAGGGTGGGAGTGAAAAGTAGAGAGTCAGA
CGAAGGGGAATCGTAGACAGCTTCTAGAGCT
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Coding sequence (CDS) from alignment at chr9:47343..50073+

>NO09G00070.1 ID=NO09G00070.1|Name=NO09G00070.1|organism=Nannochloropsis oceanica|type=CDS|length=1698bp|location=Sequence derived from alignment at chr9:47343..50073+ (Nannochloropsis oceanica)
ATGCGACCAAGACATGCACCACATAGTGGCGGCACAATAAACCACTCACA
CCACACCCGCCATCCATTCCCAATAGTCATGTCCCTGGCGGATGAGCAAG
AGATATTGGCGGGCTTGGAAGAGGAACTTGGATGCTTGTCTTCCGGGGCG
CCTTCGCCCTTAAGCGGCCCCTCTCTCAGTAGCAGCCAACCGCTGAACAA
CGTCCACCCAAACAACAACGGAAGCAATGGTGACGTCGATGGCAGCCTCT
TGCTGCCTCCGTCGTGCATACAGGATCAGCCTGGGAAGCGAGGTGACAGC
AGCGGAGAAGGGGAGGGAGTGGGGGAGGCAGACGATGCGCTGCGGCAGGC
GGCAGACTTGTTGCTGGAGGAGGGTGGGCACGACGACCAAATATTATCGA
TCGCCTCGTCGGCTTCCAGCACCGCCTTGGCAGGGCTGGGGGAGGAAAGA
AGGTTAGGAGAAGGAGAAGAGAAGGAGGATGGCGAGAGAGAAGAAGGGGG
AAGCCTTTGTGGAGACTCACATAGCCTGGAGAATGGGAGCGGGGGAAATG
GAATAGGAAAAGGCAAAGGCAACAGCTTAATGGCGTCGAAATCGACGGTT
CCTGTGCCTCCTCGTCCTCCTCCGCAGCCGTCAACACGCAAGATCACCAT
GTCGTTGCGGCCCCCTCGACAACGACGGGCGTTTGACGGGTATGAGACTT
CGATGAATGGAGGGGGAGGGGAGGACGAGGATGAGGACGAGGAGAACGAT
GAGGGCAAGGACGGGAGCGGGCGACGATCTGGTCGATGTGGAAGCAGTGG
TGGGCGCTGGGGAGGTTCCTCGGCAGCGAGTCGGGGAGGGAGGAGTGGCG
GGGGAGGGAATCGCAGCGGTGGGGTGACTAGGAGCAACAGCAACAACAGC
AGCAGCAGCAGCAACAGCAACAGCAGTGCCAATGGGCCGGGACCTTCTGC
AACGCCTTTCAATTCGGCCGTGTGCAAGAAGAGATTGTATGGCCCGGGGC
GTGGCCGGTGGAAGCGCCGCCGGTTTGAAGGCAATGGATCTATGGATGAC
TTTACGTCCGAGGTCCTCCGCCTCCTCCAAACCCGCGGCCCGCTCTCGTT
CGACGACATCTACACCGCCCTGCCCCGGCAGCTCCGAGTCTTTCCTCATG
CCCCGCATTCCATCCAGAGCGTCCTGGACGTGCTCCGGGCAACCCCTCTC
GTCAATCTCGTCCGGGAGGAGAAAGACAGCCCTCTTCTCTACACTTTTTT
GGACGGCCATAAGGTGCCCAAGCCCATCGAGATGGGGGGAGTGAAGGAGG
AGTCTTCGACACTCGAGGAGACGGAGGACGAGCTCCGTCGACGGATTTCC
CTCTTACGCGGAGAGCTGGTGGCTTTAAAGGAGGGAGGGAAGGAGGAAGG
AAGCGGGGGGAGGAGGACGGCTTTGGAGGTGTTGACGAGGGTAATGGGTG
AGGGGCCGGCGGGAGGAGGGGAGGGAGGGGGGAGGGGGGCGGGAGAGCGC
AAGGGAGCGGATGGCGGCGAATCCGATCTTCAGAGCGGCACTCCTGGCGT
TGGGGGTGCAGGTGTAGAGAGAGAGGGAGGGAGGGAGGGCAAGAGGGAGG
GAAAGGAAGGAGGAGCTGTGTCGAAGAAGGGAAAGAGGCAAGGAGAGAGG
GAGGGAGAAGGGGAGGGTGGACCACCCTTATCCCCACTTCTATTTTGA
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Synonyms
Publications