NO08G04410, NO08G04410 (gene) Nannochloropsis oceanica

Overview
NameNO08G04410
Unique NameNO08G04410
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length884
Alignment locationchr8:1290957..1291840 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1290957..1291840 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO08G04410 vs. NCBI_GenBank
Match: EWM26908.1 (hypothetical protein Naga_100103g15 [Nannochloropsis gaditana])

HSP 1 Score: 162.5 bits (410), Expect = 1.300e-36
Identity = 105/192 (54.69%), Postives = 109/192 (56.77%), Query Frame = 0 
Query:    1 MVLIINGEVVPDSDPRAIKARGGTLSSSS----FPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASVFQGKAYTMGGGIVKTPLTQLSPSSSVAVPSPGEGTYYPSPPLLQQAAEALGTQGRMVTIPAVPFLGLSASTFDLLPCLMVALGLLFFGLRGIGVLVVMYVFIKKSQD-RPPQTAAVGQGRDPN 188
            MVLIINGEVV DSDPRAIKARGG   SSS     P                                S FQGKAYT   G VK     LS S      S  E TYYPSPP LQQAAEALGTQGR VTIPAVP LGLSASTFDLLPCL  ALG L+FG RG+G LV  YV +KK+Q  R      VGQ R  N
Sbjct:    1 MVLIINGEVVSDSDPRAIKARGGGAPSSSSHSAAPGINQRRQPATIHNRGEREEPNASKGTSQGEGRSFFQGKAYTTSEGAVKDSPRPLSTS------SVSESTYYPSPPFLQQAAEALGTQGRFVTIPAVPLLGLSASTFDLLPCLCAALGTLYFGWRGVGALVFFYVLVKKNQGARHGNADGVGQPRRDN 186
The following BLAST results are available for this feature:
BLAST of NO08G04410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26908.11.300e-3654.69hypothetical protein Naga_100103g15 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL105nonsL105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006523NSK006523Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G04410.1NO08G04410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100103g15gene3633Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G04410.1NO08G04410.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G04410 ID=NO08G04410|Name=NO08G04410|organism=Nannochloropsis oceanica|type=gene|length=884bp
CAAAGAAACGCTCTCCCTCCGAATTCCGCCTCTATTTCGCTATTTTCGCC
GTCTTTTCCCGGCAACCAATAATGGgtaagcaagttctcgattgcccctc
tcttgagtccgtaacgcgctatactccgacaacttcccctcttccccctt
cttcccctcatcgctcttcccttcccacccaccctcagTCCTTATCATCA
ATGGCGAGGTGGTACCCGACTCTGATCCGCGTGCGATCAAGGCCCGTGGT
GGCACACTGTCCTCATCCTCCTTTCCCTCGTCCACCGCCGGCCTGAACCA
GCGGCGGCCACCTGCCACTATCCACAATAGCGGAGGGGACGACGACGACG
CCAGCAGCGACAGTGGCAGTGCCAGCGTCTTCCAAGGAAAGGCCTACACC
ATGGGCGGCGGAATCGTGAAAACGCCTCTTACCCAACTTTCTCCTTCCTC
TTCCGTGGCCGTCCCGTCCCCCGGAGAAGGCACGTACTACCCCTCTCCTC
CCCTCTTGCAGCAAGCAGCAGAAGCGCTGGGCACACAGGGACGCATGGTA
ACCATTCCTGCTGTGCCTTTCCTTGGGCTTTCGGCCAGCACATTTGATCT
ACTCCCTTGTTTGATGGTCGCGTTGGGCCTGCTGTTCTTTGGGTTGCGGG
GAATTGGCGTTCTGGTAGTCATGTACGTTTTCATCAAGAAGAGTCAGGAC
CGTCCACCTCAGACAGCTGCGGTCGGGCAAGGAAGGGATCCAAATGTGGG
ACAACCGGGGCAAAGGCAGCAACAGCGACGGTAGTAGATTGAGTAGGATT
TGGGTTGGTGTGTCATGAAGATGGGCAAAAGGTAGAAGAGGAAGAGAGAG
TGTGGATAGAATGATTTAAAATCGAAATAATACT
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protein sequence of NO08G04410.1

>NO08G04410.1-protein ID=NO08G04410.1-protein|Name=NO08G04410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MVLIINGEVVPDSDPRAIKARGGTLSSSSFPSSTAGLNQRRPPATIHNSG
GDDDDASSDSGSASVFQGKAYTMGGGIVKTPLTQLSPSSSVAVPSPGEGT
YYPSPPLLQQAAEALGTQGRMVTIPAVPFLGLSASTFDLLPCLMVALGLL
FFGLRGIGVLVVMYVFIKKSQDRPPQTAAVGQGRDPNVGQPGQRQQQRR*
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Synonyms
Publications