NO08G04410.1, NO08G04410.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G04410.1
Unique NameNO08G04410.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length771
Alignment locationchr8:1290957..1291840 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1290957..1291840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G04410.1 vs.
Match: EWM26908.1 (hypothetical protein Naga_100103g15 [Nannochloropsis gaditana])

HSP 1 Score: 193.0 bits (489), Expect = 9.100e-46
Identity = 119/192 (61.98%), Postives = 128/192 (66.67%), Query Frame = 0 
Query:    1 MVLIINGEVVPDSDPRAIKARGGTLSSSSFPSSTAGLNQRRPPATIHNSGGDDDDASSDSGSA----SVFQGKAYTMGGGIVKTPLTQLSPSSSVAVPSPGEGTYYPSPPLLQQAAEALGTQGRMVTIPAVPFLGLSASTFDLLPCLMVALGLLFFGLRGIGVLVVMYVFIKKSQD-RPPQTAAVGQGRDPN 188
            MVLIINGEVV DSDPRAIKARGG   SSS  S+  G+NQRR PATIHN G  ++  +S   S     S FQGKAYT   G VK     LS SS        E TYYPSPP LQQAAEALGTQGR VTIPAVP LGLSASTFDLLPCL  ALG L+FG RG+G LV  YV +KK+Q  R      VGQ R  N
Sbjct:    1 MVLIINGEVVSDSDPRAIKARGGGAPSSSSHSAAPGINQRRQPATIHNRGEREEPNASKGTSQGEGRSFFQGKAYTTSEGAVKDSPRPLSTSSV------SESTYYPSPPFLQQAAEALGTQGRFVTIPAVPLLGLSASTFDLLPCLCAALGTLYFGWRGVGALVFFYVLVKKNQGARHGNADGVGQPRRDN 186
The following BLAST results are available for this feature:
BLAST of NO08G04410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26908.19.100e-4661.98hypothetical protein Naga_100103g15 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G04410NO08G04410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G04410.1NO08G04410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G04410.1.cds1NO08G04410.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04410.1.cds2NO08G04410.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G04410.1 ID=NO08G04410.1|Name=NO08G04410.1|organism=Nannochloropsis oceanica|type=mRNA|length=771bp
CAAAGAAACGCTCTCCCTCCGAATTCCGCCTCTATTTCGCTATTTTCGCC
GTCTTTTCCCGGCAACCAATAATGGTCCTTATCATCAATGGCGAGGTGGT
ACCCGACTCTGATCCGCGTGCGATCAAGGCCCGTGGTGGCACACTGTCCT
CATCCTCCTTTCCCTCGTCCACCGCCGGCCTGAACCAGCGGCGGCCACCT
GCCACTATCCACAATAGCGGAGGGGACGACGACGACGCCAGCAGCGACAG
TGGCAGTGCCAGCGTCTTCCAAGGAAAGGCCTACACCATGGGCGGCGGAA
TCGTGAAAACGCCTCTTACCCAACTTTCTCCTTCCTCTTCCGTGGCCGTC
CCGTCCCCCGGAGAAGGCACGTACTACCCCTCTCCTCCCCTCTTGCAGCA
AGCAGCAGAAGCGCTGGGCACACAGGGACGCATGGTAACCATTCCTGCTG
TGCCTTTCCTTGGGCTTTCGGCCAGCACATTTGATCTACTCCCTTGTTTG
ATGGTCGCGTTGGGCCTGCTGTTCTTTGGGTTGCGGGGAATTGGCGTTCT
GGTAGTCATGTACGTTTTCATCAAGAAGAGTCAGGACCGTCCACCTCAGA
CAGCTGCGGTCGGGCAAGGAAGGGATCCAAATGTGGGACAACCGGGGCAA
AGGCAGCAACAGCGACGGTAGTAGATTGAGTAGGATTTGGGTTGGTGTGT
CATGAAGATGGGCAAAAGGTAGAAGAGGAAGAGAGAGTGTGGATAGAATG
ATTTAAAATCGAAATAATACT
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protein sequence of NO08G04410.1

>NO08G04410.1-protein ID=NO08G04410.1-protein|Name=NO08G04410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MVLIINGEVVPDSDPRAIKARGGTLSSSSFPSSTAGLNQRRPPATIHNSG
GDDDDASSDSGSASVFQGKAYTMGGGIVKTPLTQLSPSSSVAVPSPGEGT
YYPSPPLLQQAAEALGTQGRMVTIPAVPFLGLSASTFDLLPCLMVALGLL
FFGLRGIGVLVVMYVFIKKSQDRPPQTAAVGQGRDPNVGQPGQRQQQRR*
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mRNA from alignment at chr8:1290957..1291840+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G04410.1 ID=NO08G04410.1|Name=NO08G04410.1|organism=Nannochloropsis oceanica|type=mRNA|length=884bp|location=Sequence derived from alignment at chr8:1290957..1291840+ (Nannochloropsis oceanica)
CAAAGAAACGCTCTCCCTCCGAATTCCGCCTCTATTTCGCTATTTTCGCC
GTCTTTTCCCGGCAACCAATAATGGGTAAGCAAGTTCTCGATTGCCCCTC
TCTTGAGTCCGTAACGCGCTATACTCCGACAACTTCCCCTCTTCCCCCTT
CTTCCCCTCATCGCTCTTCCCTTCCCACCCACCCTCAGTCCTTATCATCA
ATGGCGAGGTGGTACCCGACTCTGATCCGCGTGCGATCAAGGCCCGTGGT
GGCACACTGTCCTCATCCTCCTTTCCCTCGTCCACCGCCGGCCTGAACCA
GCGGCGGCCACCTGCCACTATCCACAATAGCGGAGGGGACGACGACGACG
CCAGCAGCGACAGTGGCAGTGCCAGCGTCTTCCAAGGAAAGGCCTACACC
ATGGGCGGCGGAATCGTGAAAACGCCTCTTACCCAACTTTCTCCTTCCTC
TTCCGTGGCCGTCCCGTCCCCCGGAGAAGGCACGTACTACCCCTCTCCTC
CCCTCTTGCAGCAAGCAGCAGAAGCGCTGGGCACACAGGGACGCATGGTA
ACCATTCCTGCTGTGCCTTTCCTTGGGCTTTCGGCCAGCACATTTGATCT
ACTCCCTTGTTTGATGGTCGCGTTGGGCCTGCTGTTCTTTGGGTTGCGGG
GAATTGGCGTTCTGGTAGTCATGTACGTTTTCATCAAGAAGAGTCAGGAC
CGTCCACCTCAGACAGCTGCGGTCGGGCAAGGAAGGGATCCAAATGTGGG
ACAACCGGGGCAAAGGCAGCAACAGCGACGGTAGTAGATTGAGTAGGATT
TGGGTTGGTGTGTCATGAAGATGGGCAAAAGGTAGAAGAGGAAGAGAGAG
TGTGGATAGAATGATTTAAAATCGAAATAATACT
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Coding sequence (CDS) from alignment at chr8:1290957..1291840+

>NO08G04410.1 ID=NO08G04410.1|Name=NO08G04410.1|organism=Nannochloropsis oceanica|type=CDS|length=600bp|location=Sequence derived from alignment at chr8:1290957..1291840+ (Nannochloropsis oceanica)
ATGGTCCTTATCATCAATGGCGAGGTGGTACCCGACTCTGATCCGCGTGC
GATCAAGGCCCGTGGTGGCACACTGTCCTCATCCTCCTTTCCCTCGTCCA
CCGCCGGCCTGAACCAGCGGCGGCCACCTGCCACTATCCACAATAGCGGA
GGGGACGACGACGACGCCAGCAGCGACAGTGGCAGTGCCAGCGTCTTCCA
AGGAAAGGCCTACACCATGGGCGGCGGAATCGTGAAAACGCCTCTTACCC
AACTTTCTCCTTCCTCTTCCGTGGCCGTCCCGTCCCCCGGAGAAGGCACG
TACTACCCCTCTCCTCCCCTCTTGCAGCAAGCAGCAGAAGCGCTGGGCAC
ACAGGGACGCATGGTAACCATTCCTGCTGTGCCTTTCCTTGGGCTTTCGG
CCAGCACATTTGATCTACTCCCTTGTTTGATGGTCGCGTTGGGCCTGCTG
TTCTTTGGGTTGCGGGGAATTGGCGTTCTGGTAGTCATGTACGTTTTCAT
CAAGAAGAGTCAGGACCGTCCACCTCAGACAGCTGCGGTCGGGCAAGGAA
GGGATCCAAATGTGGGACAACCGGGGCAAAGGCAGCAACAGCGACGGTAG
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Synonyms
Publications