NO08G04320, NO08G04320 (gene) Nannochloropsis oceanica

Overview
NameNO08G04320
Unique NameNO08G04320
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1890
Alignment locationchr8:1263734..1265623 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1263734..1265623 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO08G04320 vs. NCBI_GenBank
Match: EWM26912.1 (hypothetical protein Naga_100103g6 [Nannochloropsis gaditana])

HSP 1 Score: 95.9 bits (237), Expect = 2.500e-16
Identity = 49/114 (42.98%), Postives = 75/114 (65.79%), Query Frame = 0 
Query:   68 STSDTTHDLPLLDDVRRMHPRELCKLLTENKEDLERLHTVGLMLTEEISRLRNQVWMEQLSRKVTVSRAHAMATKWQVKAVREETKALSTEIRIERLKNRVRFLETTNKDLVEE 182
            +TS     LPL  D+  MHP+E+ KL+ +N+ + +RL+ + +MLT EI RLR+QV ME+ SRKV +SR HA A KWQ +   ++ K LS E++I   + ++  L+  N+ L+EE
Sbjct:   49 NTSIGPSGLPLFKDIESMHPKEIYKLVMDNEYNKDRLYIIAMMLTGEIIRLRDQVRMEKSSRKVDISRGHATAMKWQTEVAHQKIKILSQEVKIGNFETQISMLKMANQALIEE 162
The following BLAST results are available for this feature:
BLAST of NO08G04320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26912.12.500e-1642.98hypothetical protein Naga_100103g6 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL105nonsL105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006534NSK006534Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G04320.1NO08G04320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583435gene_3783Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100103g6gene3642Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G04320.1NO08G04320.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G04320 ID=NO08G04320|Name=NO08G04320|organism=Nannochloropsis oceanica|type=gene|length=1890bp
TAAGAAGCATCTTTTTCTATGAGGGTTTTAGACGACTTTATGGACCCTAA
GGCTATATTCAGTCTACTTATGGACGATCGCTTGTTTCTAGAGGTGGAGT
ATGCAGATGTTTCGCAGTCAGCTGCTGTCATAAGCTAAAGAAGGAGAGCA
ACGTTCGAACGTCTCAAATCACACGAGGAAGCTGTGGGGAGGTCGTGTGC
ATCATCAGCGAAACAGAACATTTGGGTTAGTAATGTGACAATAATTTGCA
AAATTTGCAAGTGACATATAGATCCTTTCACATAAGTGGCACCTTTGTCG
ACATCCACCTCCCGACAGGATGCACCGCAACTGTCTTTACCACGCCATTC
CTTCTGGCTGGCTGCTGCTCTTTTTCCTGGTCTTGCTCCCACCCCAGGCA
ATCGTCTTGGCCTTTTTCGCACACCCTCCACCCACCTTCATCCCTGTTTG
GTACGCGCCGCAGCAGCAACTGCAGCAGCTGCAGCATACACATACATGCC
TATGGTTTGCAGCTATAATGTCGACTTCGGACACCACCCACGACCTCCCC
CTTCTCGATGATGTCCGCCGCATGCATCCGCGGGAGCTCTGTAAGCTGCT
GACGGAAAACAAAGAGGATCTAGAACGCCTGCATACTGTGGGGTTGATGC
TTACGGAAGAAATTTCCCGTCTTCGGAACCAGGTGTGGATGGAGCAACTG
TCACGCAAAGTGACCGTCTCTCGGGCACATGCTATGGCGACGAAATGGCA
AGTCAAGGCGGTGCGGGAGGAGACCAAGGCCTTATCGACCGAAATCAGGA
TAGAGAGACTGAAAAACCGCGTTCGTTTTCTCGAAACCACCAATAAGGAC
TTGGTTGAGGAGCTTGGGTGGATCGGAGGGGGGAGGGGAGAAGATGAAAA
GGGAGGGGGAAGGAGTGGATGGGCGGCAGTACGCGACGAAGAGGAGAGAG
AAGGGGACGTGGACGACTTTCTAAAAGAGAAAGATGAGGATGAATCCATT
GTAGAGGAAGAAGACAAAGATGAGCTGGAAGAAGAGGACGATGATCAGTT
AGTCACTGAAGAGGAAGAGGAGGACGAGTTGGAGGCAGAGGCATTGACCG
ATCTGGATCCGGAGATGGAGGGCGAGGAGGAGGTGGGCGCCGTGGCGAGG
GGAGTTGAGATGCAGGCTGAGGGTTTGATTCCGAACGTAGCGGAAGAGGA
AGCAGTCATAAAGGAAGAAGGAAATACTGCACCAGAGGGAGCATGCTATC
CAGGGATGGAGCACACGGACCATATTCTGGAGAATCTGGAGCGTCTGGCG
CAAAAGCTGGAGGAGTAAGGGCGGAAGCGGGAAAGAATTGGGGACGAGAG
GGAACGGCCAGGGAAGCAGGAGGTATACTAAGACAGAAGCATCACAACAA
GCAAATAATCAAAATAACGCTTAATATTCAAGAAGCGGGCGTTTTCAAAG
ACAGAGCAGACTCCGCAGCCTCCGAGTCGATTTTTTCCTTCTTGTTCCCT
TCCCTTGCTATAGAATCTTCTAGTAAGCGCTTCAGATCTCCGGCTACGTC
TCCGTCATCAAAGGGCGTCGTGCATCTCTGATGCTTTTCGTCTCCCTACA
ATTAACAAGCACCTCTCATCCTTTTGGTCCACACCTGCATCCTTTCAATC
GATACCATAGAGTCTCCGCTCCAGCACCTTCTCCTCCCTTCGTGCTCGCC
ATCTTCTCCTCCTGATTCTTGAATCGAGTCATAAGAGAGGACAGATGAAA
GAAAAGTTTAAAGCACGGAGCCCAAAGCCTATGACTAGAAGCGGAAATAA
CAAGGGACAAAATGAGGGAGAAAGAGAGACCAAGGCCCAAATGTGCAAAA
TTCAATTTAACACTAAATCAAATACAAAGCCAATAACGAT
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protein sequence of NO08G04320.1

>NO08G04320.1-protein ID=NO08G04320.1-protein|Name=NO08G04320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp
MHRNCLYHAIPSGWLLLFFLVLLPPQAIVLAFFAHPPPTFIPVWYAPQQQ
LQQLQHTHTCLWFAAIMSTSDTTHDLPLLDDVRRMHPRELCKLLTENKED
LERLHTVGLMLTEEISRLRNQVWMEQLSRKVTVSRAHAMATKWQVKAVRE
ETKALSTEIRIERLKNRVRFLETTNKDLVEELGWIGGGRGEDEKGGGRSG
WAAVRDEEEREGDVDDFLKEKDEDESIVEEEDKDELEEEDDDQLVTEEEE
EDELEAEALTDLDPEMEGEEEVGAVARGVEMQAEGLIPNVAEEEAVIKEE
GNTAPEGACYPGMEHTDHILENLERLAQKLEE*
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Synonyms
Publications