NO08G04320.1, NO08G04320.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G04320.1
Unique NameNO08G04320.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1890
Alignment locationchr8:1263734..1265623 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1263734..1265623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G04320.1 vs.
Match: EWM26912.1 (hypothetical protein Naga_100103g6 [Nannochloropsis gaditana])

HSP 1 Score: 77.8 bits (190), Expect = 7.100e-11
Identity = 95/317 (29.97%), Postives = 152/317 (47.95%), Query Frame = 0 
Query:   16 LLFFLVLLPPQAIVLAFFAHPPPTFIPVWYAPQQQLQQLQHTHTCLWFAAIMSTSDTTHDLPLLDDVRRMHPRELCKLLTENKEDLERLHTVGLMLTEEISRLRNQVWMEQLSRKVTVSRAHAMATKWQVKAVREETKALSTEIRIERLKNRVRFLETTNKDLVEELGWIGGGRGEDEKGGGRSGWAAVRDEEEREGDVDDFLKEKDEDESIVEEEDKDELEEEDDDQLVTEEEEEDELEAEALTDLDPEMEGEEEVGAVARGVEMQAEGLIPNVAEEEAVIKEEGNTAPEGACYPGMEHTDHILENLERLAQKLEE 333
            L+ F V LP + + +AF +  P             L   Q T      A   +TS     LPL  D+  MHP+E+ KL+ +N+ + +RL+ + +MLT EI RLR+QV ME+ SRKV +SR HA A KWQ +   ++ K LS E++I   + ++  L+  N+ L+EE           EK           D ++R GD+    K +   E + ++ + DE+  +++D    E++  +E + E     + E   E+++    +G ++  +  IPN+ +                        D IL NLERLAQKLEE
Sbjct:   12 LVTFSVCLPSKILHMAFLSQMP-------------LSTAQRTRPFPKLAR--NTSIGPSGLPLFKDIESMHPKEIYKLVMDNEYNKDRLYIIAMMLTGEIIRLRDQVRMEKSSRKVDISRGHATAMKWQTEVAHQKIKILSQEVKIGNFETQISMLKMANQALIEEF-------TSFEKDIKEIVERKDEDLKKRRGDMPANKKGEALLEDLEKDYNHDEVGNDEEDGHNDEDKGNEEGKGEGGDRNEREKRREKDI----KGGDIWKK--IPNIEK------------------------DPILTNLERLAQKLEE 276
The following BLAST results are available for this feature:
BLAST of NO08G04320.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26912.17.100e-1129.97hypothetical protein Naga_100103g6 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G04320NO08G04320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G04320.1NO08G04320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G04320.1.cds1NO08G04320.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G04320.1 ID=NO08G04320.1|Name=NO08G04320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1890bp
TAAGAAGCATCTTTTTCTATGAGGGTTTTAGACGACTTTATGGACCCTAA
GGCTATATTCAGTCTACTTATGGACGATCGCTTGTTTCTAGAGGTGGAGT
ATGCAGATGTTTCGCAGTCAGCTGCTGTCATAAGCTAAAGAAGGAGAGCA
ACGTTCGAACGTCTCAAATCACACGAGGAAGCTGTGGGGAGGTCGTGTGC
ATCATCAGCGAAACAGAACATTTGGGTTAGTAATGTGACAATAATTTGCA
AAATTTGCAAGTGACATATAGATCCTTTCACATAAGTGGCACCTTTGTCG
ACATCCACCTCCCGACAGGATGCACCGCAACTGTCTTTACCACGCCATTC
CTTCTGGCTGGCTGCTGCTCTTTTTCCTGGTCTTGCTCCCACCCCAGGCA
ATCGTCTTGGCCTTTTTCGCACACCCTCCACCCACCTTCATCCCTGTTTG
GTACGCGCCGCAGCAGCAACTGCAGCAGCTGCAGCATACACATACATGCC
TATGGTTTGCAGCTATAATGTCGACTTCGGACACCACCCACGACCTCCCC
CTTCTCGATGATGTCCGCCGCATGCATCCGCGGGAGCTCTGTAAGCTGCT
GACGGAAAACAAAGAGGATCTAGAACGCCTGCATACTGTGGGGTTGATGC
TTACGGAAGAAATTTCCCGTCTTCGGAACCAGGTGTGGATGGAGCAACTG
TCACGCAAAGTGACCGTCTCTCGGGCACATGCTATGGCGACGAAATGGCA
AGTCAAGGCGGTGCGGGAGGAGACCAAGGCCTTATCGACCGAAATCAGGA
TAGAGAGACTGAAAAACCGCGTTCGTTTTCTCGAAACCACCAATAAGGAC
TTGGTTGAGGAGCTTGGGTGGATCGGAGGGGGGAGGGGAGAAGATGAAAA
GGGAGGGGGAAGGAGTGGATGGGCGGCAGTACGCGACGAAGAGGAGAGAG
AAGGGGACGTGGACGACTTTCTAAAAGAGAAAGATGAGGATGAATCCATT
GTAGAGGAAGAAGACAAAGATGAGCTGGAAGAAGAGGACGATGATCAGTT
AGTCACTGAAGAGGAAGAGGAGGACGAGTTGGAGGCAGAGGCATTGACCG
ATCTGGATCCGGAGATGGAGGGCGAGGAGGAGGTGGGCGCCGTGGCGAGG
GGAGTTGAGATGCAGGCTGAGGGTTTGATTCCGAACGTAGCGGAAGAGGA
AGCAGTCATAAAGGAAGAAGGAAATACTGCACCAGAGGGAGCATGCTATC
CAGGGATGGAGCACACGGACCATATTCTGGAGAATCTGGAGCGTCTGGCG
CAAAAGCTGGAGGAGTAAGGGCGGAAGCGGGAAAGAATTGGGGACGAGAG
GGAACGGCCAGGGAAGCAGGAGGTATACTAAGACAGAAGCATCACAACAA
GCAAATAATCAAAATAACGCTTAATATTCAAGAAGCGGGCGTTTTCAAAG
ACAGAGCAGACTCCGCAGCCTCCGAGTCGATTTTTTCCTTCTTGTTCCCT
TCCCTTGCTATAGAATCTTCTAGTAAGCGCTTCAGATCTCCGGCTACGTC
TCCGTCATCAAAGGGCGTCGTGCATCTCTGATGCTTTTCGTCTCCCTACA
ATTAACAAGCACCTCTCATCCTTTTGGTCCACACCTGCATCCTTTCAATC
GATACCATAGAGTCTCCGCTCCAGCACCTTCTCCTCCCTTCGTGCTCGCC
ATCTTCTCCTCCTGATTCTTGAATCGAGTCATAAGAGAGGACAGATGAAA
GAAAAGTTTAAAGCACGGAGCCCAAAGCCTATGACTAGAAGCGGAAATAA
CAAGGGACAAAATGAGGGAGAAAGAGAGACCAAGGCCCAAATGTGCAAAA
TTCAATTTAACACTAAATCAAATACAAAGCCAATAACGAT
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protein sequence of NO08G04320.1

>NO08G04320.1-protein ID=NO08G04320.1-protein|Name=NO08G04320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp
MHRNCLYHAIPSGWLLLFFLVLLPPQAIVLAFFAHPPPTFIPVWYAPQQQ
LQQLQHTHTCLWFAAIMSTSDTTHDLPLLDDVRRMHPRELCKLLTENKED
LERLHTVGLMLTEEISRLRNQVWMEQLSRKVTVSRAHAMATKWQVKAVRE
ETKALSTEIRIERLKNRVRFLETTNKDLVEELGWIGGGRGEDEKGGGRSG
WAAVRDEEEREGDVDDFLKEKDEDESIVEEEDKDELEEEDDDQLVTEEEE
EDELEAEALTDLDPEMEGEEEVGAVARGVEMQAEGLIPNVAEEEAVIKEE
GNTAPEGACYPGMEHTDHILENLERLAQKLEE*
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mRNA from alignment at chr8:1263734..1265623-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G04320.1 ID=NO08G04320.1|Name=NO08G04320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1890bp|location=Sequence derived from alignment at chr8:1263734..1265623- (Nannochloropsis oceanica)
TAAGAAGCATCTTTTTCTATGAGGGTTTTAGACGACTTTATGGACCCTAA
GGCTATATTCAGTCTACTTATGGACGATCGCTTGTTTCTAGAGGTGGAGT
ATGCAGATGTTTCGCAGTCAGCTGCTGTCATAAGCTAAAGAAGGAGAGCA
ACGTTCGAACGTCTCAAATCACACGAGGAAGCTGTGGGGAGGTCGTGTGC
ATCATCAGCGAAACAGAACATTTGGGTTAGTAATGTGACAATAATTTGCA
AAATTTGCAAGTGACATATAGATCCTTTCACATAAGTGGCACCTTTGTCG
ACATCCACCTCCCGACAGGATGCACCGCAACTGTCTTTACCACGCCATTC
CTTCTGGCTGGCTGCTGCTCTTTTTCCTGGTCTTGCTCCCACCCCAGGCA
ATCGTCTTGGCCTTTTTCGCACACCCTCCACCCACCTTCATCCCTGTTTG
GTACGCGCCGCAGCAGCAACTGCAGCAGCTGCAGCATACACATACATGCC
TATGGTTTGCAGCTATAATGTCGACTTCGGACACCACCCACGACCTCCCC
CTTCTCGATGATGTCCGCCGCATGCATCCGCGGGAGCTCTGTAAGCTGCT
GACGGAAAACAAAGAGGATCTAGAACGCCTGCATACTGTGGGGTTGATGC
TTACGGAAGAAATTTCCCGTCTTCGGAACCAGGTGTGGATGGAGCAACTG
TCACGCAAAGTGACCGTCTCTCGGGCACATGCTATGGCGACGAAATGGCA
AGTCAAGGCGGTGCGGGAGGAGACCAAGGCCTTATCGACCGAAATCAGGA
TAGAGAGACTGAAAAACCGCGTTCGTTTTCTCGAAACCACCAATAAGGAC
TTGGTTGAGGAGCTTGGGTGGATCGGAGGGGGGAGGGGAGAAGATGAAAA
GGGAGGGGGAAGGAGTGGATGGGCGGCAGTACGCGACGAAGAGGAGAGAG
AAGGGGACGTGGACGACTTTCTAAAAGAGAAAGATGAGGATGAATCCATT
GTAGAGGAAGAAGACAAAGATGAGCTGGAAGAAGAGGACGATGATCAGTT
AGTCACTGAAGAGGAAGAGGAGGACGAGTTGGAGGCAGAGGCATTGACCG
ATCTGGATCCGGAGATGGAGGGCGAGGAGGAGGTGGGCGCCGTGGCGAGG
GGAGTTGAGATGCAGGCTGAGGGTTTGATTCCGAACGTAGCGGAAGAGGA
AGCAGTCATAAAGGAAGAAGGAAATACTGCACCAGAGGGAGCATGCTATC
CAGGGATGGAGCACACGGACCATATTCTGGAGAATCTGGAGCGTCTGGCG
CAAAAGCTGGAGGAGTAAGGGCGGAAGCGGGAAAGAATTGGGGACGAGAG
GGAACGGCCAGGGAAGCAGGAGGTATACTAAGACAGAAGCATCACAACAA
GCAAATAATCAAAATAACGCTTAATATTCAAGAAGCGGGCGTTTTCAAAG
ACAGAGCAGACTCCGCAGCCTCCGAGTCGATTTTTTCCTTCTTGTTCCCT
TCCCTTGCTATAGAATCTTCTAGTAAGCGCTTCAGATCTCCGGCTACGTC
TCCGTCATCAAAGGGCGTCGTGCATCTCTGATGCTTTTCGTCTCCCTACA
ATTAACAAGCACCTCTCATCCTTTTGGTCCACACCTGCATCCTTTCAATC
GATACCATAGAGTCTCCGCTCCAGCACCTTCTCCTCCCTTCGTGCTCGCC
ATCTTCTCCTCCTGATTCTTGAATCGAGTCATAAGAGAGGACAGATGAAA
GAAAAGTTTAAAGCACGGAGCCCAAAGCCTATGACTAGAAGCGGAAATAA
CAAGGGACAAAATGAGGGAGAAAGAGAGACCAAGGCCCAAATGTGCAAAA
TTCAATTTAACACTAAATCAAATACAAAGCCAATAACGAT
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Coding sequence (CDS) from alignment at chr8:1263734..1265623-

>NO08G04320.1 ID=NO08G04320.1|Name=NO08G04320.1|organism=Nannochloropsis oceanica|type=CDS|length=999bp|location=Sequence derived from alignment at chr8:1263734..1265623- (Nannochloropsis oceanica)
ATGCACCGCAACTGTCTTTACCACGCCATTCCTTCTGGCTGGCTGCTGCT
CTTTTTCCTGGTCTTGCTCCCACCCCAGGCAATCGTCTTGGCCTTTTTCG
CACACCCTCCACCCACCTTCATCCCTGTTTGGTACGCGCCGCAGCAGCAA
CTGCAGCAGCTGCAGCATACACATACATGCCTATGGTTTGCAGCTATAAT
GTCGACTTCGGACACCACCCACGACCTCCCCCTTCTCGATGATGTCCGCC
GCATGCATCCGCGGGAGCTCTGTAAGCTGCTGACGGAAAACAAAGAGGAT
CTAGAACGCCTGCATACTGTGGGGTTGATGCTTACGGAAGAAATTTCCCG
TCTTCGGAACCAGGTGTGGATGGAGCAACTGTCACGCAAAGTGACCGTCT
CTCGGGCACATGCTATGGCGACGAAATGGCAAGTCAAGGCGGTGCGGGAG
GAGACCAAGGCCTTATCGACCGAAATCAGGATAGAGAGACTGAAAAACCG
CGTTCGTTTTCTCGAAACCACCAATAAGGACTTGGTTGAGGAGCTTGGGT
GGATCGGAGGGGGGAGGGGAGAAGATGAAAAGGGAGGGGGAAGGAGTGGA
TGGGCGGCAGTACGCGACGAAGAGGAGAGAGAAGGGGACGTGGACGACTT
TCTAAAAGAGAAAGATGAGGATGAATCCATTGTAGAGGAAGAAGACAAAG
ATGAGCTGGAAGAAGAGGACGATGATCAGTTAGTCACTGAAGAGGAAGAG
GAGGACGAGTTGGAGGCAGAGGCATTGACCGATCTGGATCCGGAGATGGA
GGGCGAGGAGGAGGTGGGCGCCGTGGCGAGGGGAGTTGAGATGCAGGCTG
AGGGTTTGATTCCGAACGTAGCGGAAGAGGAAGCAGTCATAAAGGAAGAA
GGAAATACTGCACCAGAGGGAGCATGCTATCCAGGGATGGAGCACACGGA
CCATATTCTGGAGAATCTGGAGCGTCTGGCGCAAAAGCTGGAGGAGTAA
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Synonyms
Publications