NO08G04270, NO08G04270 (gene) Nannochloropsis oceanica

Overview
NameNO08G04270
Unique NameNO08G04270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2468
Alignment locationchr8:1250298..1252765 +

Link to JBrowse

Properties
Property NameValue
DescriptionArrestin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1250298..1252765 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR014756Ig_E-set
IPR011021Arrestin-like_N
Homology
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BLAST of NO08G04270 vs. NCBI_GenBank
Match: EWM26911.1 (Arrestin [Nannochloropsis gaditana])

HSP 1 Score: 282.3 bits (721), Expect = 2.600e-72
Identity = 157/381 (41.21%), Postives = 226/381 (59.32%), Query Frame = 0 
Query:   37 ASYGTPPSSSNSVPHQYPP---QELYVNDSTLSQVASAKNGITLWLSKTEFHPGEIIGGKMRATFAKRTTAKSVCARLSCGAGVEWSTGSGERSVVHKAYTALAPPITVILQEN--QGQSFFLEPHRPYEWAFQITLPPDLPSCFSYKHG-------THISYGITLFVDIPNWPDYKLAFPLKVHSSPMLITPEMQKAVDRRDVHAVTTKCC-FSAGQATLSLSVPNTVFPFVDGTSIDPSSFPISLGVDNQSSRTIECVSLSLMGEIFMTTVNDPAKTARQCRIPFLVAGIPIVQNLLPGACLPVQPVVNFPPLFLRWNPKINVAE-HDSTPSSFSTIQMPTTTAGHILKVSYKLVLTAQIGCIYALELAVPITFAASLP 404
            ASY  P   +++V    PP   Q++ ++D  L +VA  K+GI+LWL KT+F+PG+ + GKM+A    + T ++V A+L+  A   W+  SGE S  + A   LAP + ++LQE    G +F LE  R YEW  Q  LPP LPS F +K G       THI++ +TL +DIP WPD KL + L+VH +P  ITP MQ+ V+ R+   +++ CC F  G+A L L+VP TV PF DG+S+ P+ FPIS+GV+N S RT+  V L+L+GEI +T     +        PF VA   +   +LPG  L +  V  FP L L+WNP  ++A      P   + +QMP+  AG++ ++ Y L LTA+  C +  +L+VPITF  S P
Sbjct:   76 ASYDMP--IAHAVAASSPPFSIQQIPLDDFALRKVAFTKSGISLWLPKTDFYPGDTVIGKMKAKLTSKKTIRAVKAKLNSEAVASWTESSGEHSSTYYAALELAPTVELVLQEGTPSGSTFVLERRREYEWVVQFVLPPSLPSSFRFKKGTHIHKSDTHIAHMLTLSLDIPYWPDCKLEYFLRVHCTPEAITPAMQRPVELRESRPISSCCCFFRKGEANLQLAVPITVLPFSDGSSVTPTDFPISVGVENVSKRTLTDVRLALVGEIVLTGSRAFSTHEATRSYPFTVAEHLVASKVLPGTSLALHAVTTFPTLLLQWNPDFDIAFCRSRKPKKLNIVQMPSFVAGNVFQIKYHLELTAKSACSHVPDLSVPITFVPSHP 454
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BLAST of NO08G04270 vs. NCBI_GenBank
Match: EWM24759.1 (Arrestin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 142.5 bits (358), Expect = 3.200e-30
Identity = 77/167 (46.11%), Postives = 101/167 (60.48%), Query Frame = 0 
Query:   60 VNDSTLSQVASAKNGITLWLSKTEFHPGEIIGGKMRATFAKRTTAKSVCARLSCGAGVEWSTGSGERSVVHKAYTALAPPITVILQE--NQGQSFFLEPHRPYEWAFQITLPPDLPSCFSYK-------HGTHISYGITLFVDIPNWPDYKLAFPLKVHSSPMLITP 218
            + D  L QVAS KNGI+LWL K  F+PGE I GKM+ATF  + + +++  +L+  A   W   +G + V   A   LAP I   LQE      +F LEP + YEW  ++TLP  LPS FS+K         THI+Y +TL V++P W DYKL + LKVHSSP+ ITP
Sbjct:   19 IQDGALIQVASTKNGISLWLLKDVFYPGETIHGKMKATFTSQMSVRAIKIKLTSRAKAFWWIFNGTQMVPICASLNLAPTIESSLQEMIPIRTNFVLEPGQQYEWPVELTLPQSLPSSFSFKKWTNVMREKTHIAYTLTLLVEVPGWMDYKLNYNLKVHSSPVSITP 185
The following BLAST results are available for this feature:
BLAST of NO08G04270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM26911.12.600e-7241.21Arrestin [Nannochloropsis gaditana][more]
EWM24759.13.200e-3046.11Arrestin-like protein [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL105nonsL105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006543NSK006543Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G04270.1NO08G04270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|373415gene_3778Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100103g1gene3647Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G04270.1NO08G04270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G04270 ID=NO08G04270|Name=NO08G04270|organism=Nannochloropsis oceanica|type=gene|length=2468bp
ATGGCCTACCCTAACTCATATGTGCCGACAACAACTTCAAAAATTCCCAA
CGACTACTACACTGGGACTGGTCTTGCGTCCTCCTCCTACGGCAGGCCAG
ACAGGCTTGCTTCCTACGGCACGCCGCCCTCCTCTTCCAATTCCGTGCCC
CATCAATACCCACCGCAGGAGCTTTATGTCAATGATAGCACATTGgtaag
tatgttgtggcctttctcggtgcatcgaaattcatgtgacgtgcagtgta
ttaaaaatccatttatgagtgctctttaattactcccctcacctcactcc
cttcatagTCTCAAGTGGCTTCCGCCAAGAATGGCATCACCCTCTGGCTG
TCTAAGACGGAGTTTCATCCTGGTGAAATAATTGGGGGCAAGATGCGGGC
GACCTTTGCCAAGAGGACAACGGCGAAATCTGTGTGCGCGAGAgtaagca
gggacaggagggaaagagggaggcaaggagaatgtctggtggaatattca
aaagccaatctcacgtctacagaaaacgaacagtcggccgaagataggac
tcgatgaagcaatttccatgttgttttccccatccctctttcacacattc
ccttttccgccatcttctgccctctctcgccctctccctccctctccctc
cattagCTCTCGTGCGGCGCGGGTGTAGAGTGGTCGACCGGCTCGGGGGA
ACGAAGCGTCGTTCACAAGGCTTACACTGCCTTGGCTCCTCCCATCACCG
TGATATTACAAGAGAATCAGGGACAATCCTTTTTTTTGGAACCCCACCGG
CCGTACGAGTGGGCGgtatgtcgggaggaatggagggaaggagataggaa
ttgggcagacacagggatgagaacagcaactcattacgtcaccaccagag
catgattttcattccttccttcccccccacgatagTTTCAGATCACCCTT
CCCCCCGACCTTCCTTCCTGCTTCTCCTACAAGCATGGGACCCACATCTC
GTACGGCATCACCCTCTTCGTGGACATTCCCAACTGGCCCGACTACAAGC
TGGCCTTCCCTCTTAAGGTGCACTCCTCGCCCATGCTCATCACACCGgta
ttcggggcggggggagagaaggaggaagggaggaaggctgcgtgtaggtc
tcatgtcatagctccacattcaccctatctttcatcctgccctcccttca
actcgcagGAAATGCAGAAAGCTGTAGATCGCCGCGATGTCCACGCGGTC
ACGACCAAATGCTGCTTCAGCGCGgtaggaagagagaaaagggaaaaagg
gtgttgagaaggagaagaaaagattttaagactacatgatggagacgaca
aagttcactcttgtttttcccctccccccttttctttcttcctacttccc
aagGGTCAAGCCACTCTCAGCCTCTCCGTGCCCAACACCGTCTTCCCCTT
CGTAGACGGGACCTCCATTGACCCCTCGTCCTTTCCGATTTCCCTGGGTG
TCGATAACCAGAGCTCGCGCACGATTGAGTGCGTGAGCCTCTCATTGATG
GGAGgtaagaaagaggccacatcctgggaatcaaatgtaatcctcgatta
ctcactctccgtccctttctccctacgtcccctccagAGATTTTTATGAC
TACCGTCAATGACCCTGCCAAAACTGCGCGACAGTGTCGCATTCCCTTCC
TTGTCGCTGGCATCCCCATCGTCCAAAACCTCCTTCCTGGCGCTTGCCTC
CCCGTCCAGCCTGTCGTCAACTTCCCTCCTCTTTTCCTGCGCTGGAACCC
GAAAATCAATGTCGCCGAACATGACAGCACGCCCTCCAGCTTCAGCACCA
TCCAGATGCCCACCACAACGGCAGGGCATATTCTCAAGgtcggtgcccga
gaggaggataagaggagagagatagatagatagagggaatgcgaacgtaa
ccggatagacaacgatttctcttgtttgaagatgattacatcgttcttat
cttcgttccatcttctcgattcgtcgttttctcatctctcatttattctt
cgttctctcttcacagGTCTCCTACAAGTTGGTGCTCACCGCCCAGATTG
GCTGTATTTATGCGCTCGAGCTCGCGGTGCCCATCACATTCGCAGCGTCC
CTTCCCCTCCCCCTCGCCCCCCCCATCCCGAAGTCGGCCCCGGACGACTA
CGAAGGTATGCCCCCCTCCGCTCCACCTATGCAGGACGGTGgtgagtgat
ggggtgagggagggaaggactgaaaggaacggacttgccagctgtccaat
ttgacactgtgatgtcaacaggtcgcacatgcagacaagacttaattgat
ccctacacaatccctcttacacattcgcacagCTGGGATCGTGGCCCCCG
CCTATGACCTCGTCTCCCACACTTCCTCCGCCTACCTCACCCCATACGTC
AATACTGGCCAAAAATAG
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protein sequence of NO08G04270.1

>NO08G04270.1-protein ID=NO08G04270.1-protein|Name=NO08G04270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=460bp
MAYPNSYVPTTTSKIPNDYYTGTGLASSSYGRPDRLASYGTPPSSSNSVP
HQYPPQELYVNDSTLSQVASAKNGITLWLSKTEFHPGEIIGGKMRATFAK
RTTAKSVCARLSCGAGVEWSTGSGERSVVHKAYTALAPPITVILQENQGQ
SFFLEPHRPYEWAFQITLPPDLPSCFSYKHGTHISYGITLFVDIPNWPDY
KLAFPLKVHSSPMLITPEMQKAVDRRDVHAVTTKCCFSAGQATLSLSVPN
TVFPFVDGTSIDPSSFPISLGVDNQSSRTIECVSLSLMGEIFMTTVNDPA
KTARQCRIPFLVAGIPIVQNLLPGACLPVQPVVNFPPLFLRWNPKINVAE
HDSTPSSFSTIQMPTTTAGHILKVSYKLVLTAQIGCIYALELAVPITFAA
SLPLPLAPPIPKSAPDDYEGMPPSAPPMQDGAGIVAPAYDLVSHTSSAYL
TPYVNTGQK*
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Synonyms
Publications