NO08G04270.1, NO08G04270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G04270.1
Unique NameNO08G04270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1380
Alignment locationchr8:1250298..1252765 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1250298..1252765 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO08G04270.1 vs.
Match: EWM26911.1 (Arrestin [Nannochloropsis gaditana])

HSP 1 Score: 282.3 bits (721), Expect = 2.600e-72
Identity = 157/381 (41.21%), Postives = 226/381 (59.32%), Query Frame = 0
Query:   37 ASYGTPPSSSNSVPHQYPP---QELYVNDSTLSQVASAKNGITLWLSKTEFHPGEIIGGKMRATFAKRTTAKSVCARLSCGAGVEWSTGSGERSVVHKAYTALAPPITVILQEN--QGQSFFLEPHRPYEWAFQITLPPDLPSCFSYKHG-------THISYGITLFVDIPNWPDYKLAFPLKVHSSPMLITPEMQKAVDRRDVHAVTTKCC-FSAGQATLSLSVPNTVFPFVDGTSIDPSSFPISLGVDNQSSRTIECVSLSLMGEIFMTTVNDPAKTARQCRIPFLVAGIPIVQNLLPGACLPVQPVVNFPPLFLRWNPKINVAE-HDSTPSSFSTIQMPTTTAGHILKVSYKLVLTAQIGCIYALELAVPITFAASLP 404
            ASY  P   +++V    PP   Q++ ++D  L +VA  K+GI+LWL KT+F+PG+ + GKM+A    + T ++V A+L+  A   W+  SGE S  + A   LAP + ++LQE    G +F LE  R YEW  Q  LPP LPS F +K G       THI++ +TL +DIP WPD KL + L+VH +P  ITP MQ+ V+ R+   +++ CC F  G+A L L+VP TV PF DG+S+ P+ FPIS+GV+N S RT+  V L+L+GEI +T     +        PF VA   +   +LPG  L +  V  FP L L+WNP  ++A      P   + +QMP+  AG++ ++ Y L LTA+  C +  +L+VPITF  S P
Sbjct:   76 ASYDMP--IAHAVAASSPPFSIQQIPLDDFALRKVAFTKSGISLWLPKTDFYPGDTVIGKMKAKLTSKKTIRAVKAKLNSEAVASWTESSGEHSSTYYAALELAPTVELVLQEGTPSGSTFVLERRREYEWVVQFVLPPSLPSSFRFKKGTHIHKSDTHIAHMLTLSLDIPYWPDCKLEYFLRVHCTPEAITPAMQRPVELRESRPISSCCCFFRKGEANLQLAVPITVLPFSDGSSVTPTDFPISVGVENVSKRTLTDVRLALVGEIVLTGSRAFSTHEATRSYPFTVAEHLVASKVLPGTSLALHAVTTFPTLLLQWNPDFDIAFCRSRKPKKLNIVQMPSFVAGNVFQIKYHLELTAKSACSHVPDLSVPITFVPSHP 454          
The following BLAST results are available for this feature:
BLAST of NO08G04270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26911.12.600e-7241.21Arrestin [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G04270NO08G04270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G04270.1NO08G04270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G04270.1.cds1NO08G04270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04270.1.cds2NO08G04270.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04270.1.cds3NO08G04270.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04270.1.cds4NO08G04270.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04270.1.cds5NO08G04270.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04270.1.cds6NO08G04270.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04270.1.cds7NO08G04270.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04270.1.cds8NO08G04270.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04270.1.cds9NO08G04270.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G04270.1 ID=NO08G04270.1|Name=NO08G04270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1380bp
ATGGCCTACCCTAACTCATATGTGCCGACAACAACTTCAAAAATTCCCAA
CGACTACTACACTGGGACTGGTCTTGCGTCCTCCTCCTACGGCAGGCCAG
ACAGGCTTGCTTCCTACGGCACGCCGCCCTCCTCTTCCAATTCCGTGCCC
CATCAATACCCACCGCAGGAGCTTTATGTCAATGATAGCACATTGTCTCA
AGTGGCTTCCGCCAAGAATGGCATCACCCTCTGGCTGTCTAAGACGGAGT
TTCATCCTGGTGAAATAATTGGGGGCAAGATGCGGGCGACCTTTGCCAAG
AGGACAACGGCGAAATCTGTGTGCGCGAGACTCTCGTGCGGCGCGGGTGT
AGAGTGGTCGACCGGCTCGGGGGAACGAAGCGTCGTTCACAAGGCTTACA
CTGCCTTGGCTCCTCCCATCACCGTGATATTACAAGAGAATCAGGGACAA
TCCTTTTTTTTGGAACCCCACCGGCCGTACGAGTGGGCGTTTCAGATCAC
CCTTCCCCCCGACCTTCCTTCCTGCTTCTCCTACAAGCATGGGACCCACA
TCTCGTACGGCATCACCCTCTTCGTGGACATTCCCAACTGGCCCGACTAC
AAGCTGGCCTTCCCTCTTAAGGTGCACTCCTCGCCCATGCTCATCACACC
GGAAATGCAGAAAGCTGTAGATCGCCGCGATGTCCACGCGGTCACGACCA
AATGCTGCTTCAGCGCGGGTCAAGCCACTCTCAGCCTCTCCGTGCCCAAC
ACCGTCTTCCCCTTCGTAGACGGGACCTCCATTGACCCCTCGTCCTTTCC
GATTTCCCTGGGTGTCGATAACCAGAGCTCGCGCACGATTGAGTGCGTGA
GCCTCTCATTGATGGGAGAGATTTTTATGACTACCGTCAATGACCCTGCC
AAAACTGCGCGACAGTGTCGCATTCCCTTCCTTGTCGCTGGCATCCCCAT
CGTCCAAAACCTCCTTCCTGGCGCTTGCCTCCCCGTCCAGCCTGTCGTCA
ACTTCCCTCCTCTTTTCCTGCGCTGGAACCCGAAAATCAATGTCGCCGAA
CATGACAGCACGCCCTCCAGCTTCAGCACCATCCAGATGCCCACCACAAC
GGCAGGGCATATTCTCAAGGTCTCCTACAAGTTGGTGCTCACCGCCCAGA
TTGGCTGTATTTATGCGCTCGAGCTCGCGGTGCCCATCACATTCGCAGCG
TCCCTTCCCCTCCCCCTCGCCCCCCCCATCCCGAAGTCGGCCCCGGACGA
CTACGAAGGTATGCCCCCCTCCGCTCCACCTATGCAGGACGGTGCTGGGA
TCGTGGCCCCCGCCTATGACCTCGTCTCCCACACTTCCTCCGCCTACCTC
ACCCCATACGTCAATACTGGCCAAAAATAG
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protein sequence of NO08G04270.1

>NO08G04270.1-protein ID=NO08G04270.1-protein|Name=NO08G04270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=460bp
MAYPNSYVPTTTSKIPNDYYTGTGLASSSYGRPDRLASYGTPPSSSNSVP
HQYPPQELYVNDSTLSQVASAKNGITLWLSKTEFHPGEIIGGKMRATFAK
RTTAKSVCARLSCGAGVEWSTGSGERSVVHKAYTALAPPITVILQENQGQ
SFFLEPHRPYEWAFQITLPPDLPSCFSYKHGTHISYGITLFVDIPNWPDY
KLAFPLKVHSSPMLITPEMQKAVDRRDVHAVTTKCCFSAGQATLSLSVPN
TVFPFVDGTSIDPSSFPISLGVDNQSSRTIECVSLSLMGEIFMTTVNDPA
KTARQCRIPFLVAGIPIVQNLLPGACLPVQPVVNFPPLFLRWNPKINVAE
HDSTPSSFSTIQMPTTTAGHILKVSYKLVLTAQIGCIYALELAVPITFAA
SLPLPLAPPIPKSAPDDYEGMPPSAPPMQDGAGIVAPAYDLVSHTSSAYL
TPYVNTGQK*
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mRNA from alignment at chr8:1250298..1252765+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G04270.1 ID=NO08G04270.1|Name=NO08G04270.1|organism=Nannochloropsis oceanica|type=mRNA|length=2468bp|location=Sequence derived from alignment at chr8:1250298..1252765+ (Nannochloropsis oceanica)
ATGGCCTACCCTAACTCATATGTGCCGACAACAACTTCAAAAATTCCCAA CGACTACTACACTGGGACTGGTCTTGCGTCCTCCTCCTACGGCAGGCCAG ACAGGCTTGCTTCCTACGGCACGCCGCCCTCCTCTTCCAATTCCGTGCCC CATCAATACCCACCGCAGGAGCTTTATGTCAATGATAGCACATTGGTAAG TATGTTGTGGCCTTTCTCGGTGCATCGAAATTCATGTGACGTGCAGTGTA TTAAAAATCCATTTATGAGTGCTCTTTAATTACTCCCCTCACCTCACTCC CTTCATAGTCTCAAGTGGCTTCCGCCAAGAATGGCATCACCCTCTGGCTG TCTAAGACGGAGTTTCATCCTGGTGAAATAATTGGGGGCAAGATGCGGGC GACCTTTGCCAAGAGGACAACGGCGAAATCTGTGTGCGCGAGAGTAAGCA GGGACAGGAGGGAAAGAGGGAGGCAAGGAGAATGTCTGGTGGAATATTCA AAAGCCAATCTCACGTCTACAGAAAACGAACAGTCGGCCGAAGATAGGAC TCGATGAAGCAATTTCCATGTTGTTTTCCCCATCCCTCTTTCACACATTC CCTTTTCCGCCATCTTCTGCCCTCTCTCGCCCTCTCCCTCCCTCTCCCTC CATTAGCTCTCGTGCGGCGCGGGTGTAGAGTGGTCGACCGGCTCGGGGGA ACGAAGCGTCGTTCACAAGGCTTACACTGCCTTGGCTCCTCCCATCACCG TGATATTACAAGAGAATCAGGGACAATCCTTTTTTTTGGAACCCCACCGG CCGTACGAGTGGGCGGTATGTCGGGAGGAATGGAGGGAAGGAGATAGGAA TTGGGCAGACACAGGGATGAGAACAGCAACTCATTACGTCACCACCAGAG CATGATTTTCATTCCTTCCTTCCCCCCCACGATAGTTTCAGATCACCCTT CCCCCCGACCTTCCTTCCTGCTTCTCCTACAAGCATGGGACCCACATCTC GTACGGCATCACCCTCTTCGTGGACATTCCCAACTGGCCCGACTACAAGC TGGCCTTCCCTCTTAAGGTGCACTCCTCGCCCATGCTCATCACACCGGTA TTCGGGGCGGGGGGAGAGAAGGAGGAAGGGAGGAAGGCTGCGTGTAGGTC TCATGTCATAGCTCCACATTCACCCTATCTTTCATCCTGCCCTCCCTTCA ACTCGCAGGAAATGCAGAAAGCTGTAGATCGCCGCGATGTCCACGCGGTC ACGACCAAATGCTGCTTCAGCGCGGTAGGAAGAGAGAAAAGGGAAAAAGG GTGTTGAGAAGGAGAAGAAAAGATTTTAAGACTACATGATGGAGACGACA AAGTTCACTCTTGTTTTTCCCCTCCCCCCTTTTCTTTCTTCCTACTTCCC AAGGGTCAAGCCACTCTCAGCCTCTCCGTGCCCAACACCGTCTTCCCCTT CGTAGACGGGACCTCCATTGACCCCTCGTCCTTTCCGATTTCCCTGGGTG TCGATAACCAGAGCTCGCGCACGATTGAGTGCGTGAGCCTCTCATTGATG GGAGGTAAGAAAGAGGCCACATCCTGGGAATCAAATGTAATCCTCGATTA CTCACTCTCCGTCCCTTTCTCCCTACGTCCCCTCCAGAGATTTTTATGAC TACCGTCAATGACCCTGCCAAAACTGCGCGACAGTGTCGCATTCCCTTCC TTGTCGCTGGCATCCCCATCGTCCAAAACCTCCTTCCTGGCGCTTGCCTC CCCGTCCAGCCTGTCGTCAACTTCCCTCCTCTTTTCCTGCGCTGGAACCC GAAAATCAATGTCGCCGAACATGACAGCACGCCCTCCAGCTTCAGCACCA TCCAGATGCCCACCACAACGGCAGGGCATATTCTCAAGGTCGGTGCCCGA GAGGAGGATAAGAGGAGAGAGATAGATAGATAGAGGGAATGCGAACGTAA CCGGATAGACAACGATTTCTCTTGTTTGAAGATGATTACATCGTTCTTAT CTTCGTTCCATCTTCTCGATTCGTCGTTTTCTCATCTCTCATTTATTCTT CGTTCTCTCTTCACAGGTCTCCTACAAGTTGGTGCTCACCGCCCAGATTG GCTGTATTTATGCGCTCGAGCTCGCGGTGCCCATCACATTCGCAGCGTCC CTTCCCCTCCCCCTCGCCCCCCCCATCCCGAAGTCGGCCCCGGACGACTA CGAAGGTATGCCCCCCTCCGCTCCACCTATGCAGGACGGTGGTGAGTGAT GGGGTGAGGGAGGGAAGGACTGAAAGGAACGGACTTGCCAGCTGTCCAAT TTGACACTGTGATGTCAACAGGTCGCACATGCAGACAAGACTTAATTGAT CCCTACACAATCCCTCTTACACATTCGCACAGCTGGGATCGTGGCCCCCG CCTATGACCTCGTCTCCCACACTTCCTCCGCCTACCTCACCCCATACGTC AATACTGGCCAAAAATAG
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Coding sequence (CDS) from alignment at chr8:1250298..1252765+

>NO08G04270.1 ID=NO08G04270.1|Name=NO08G04270.1|organism=Nannochloropsis oceanica|type=CDS|length=1380bp|location=Sequence derived from alignment at chr8:1250298..1252765+ (Nannochloropsis oceanica)
ATGGCCTACCCTAACTCATATGTGCCGACAACAACTTCAAAAATTCCCAA
CGACTACTACACTGGGACTGGTCTTGCGTCCTCCTCCTACGGCAGGCCAG
ACAGGCTTGCTTCCTACGGCACGCCGCCCTCCTCTTCCAATTCCGTGCCC
CATCAATACCCACCGCAGGAGCTTTATGTCAATGATAGCACATTGTCTCA
AGTGGCTTCCGCCAAGAATGGCATCACCCTCTGGCTGTCTAAGACGGAGT
TTCATCCTGGTGAAATAATTGGGGGCAAGATGCGGGCGACCTTTGCCAAG
AGGACAACGGCGAAATCTGTGTGCGCGAGACTCTCGTGCGGCGCGGGTGT
AGAGTGGTCGACCGGCTCGGGGGAACGAAGCGTCGTTCACAAGGCTTACA
CTGCCTTGGCTCCTCCCATCACCGTGATATTACAAGAGAATCAGGGACAA
TCCTTTTTTTTGGAACCCCACCGGCCGTACGAGTGGGCGTTTCAGATCAC
CCTTCCCCCCGACCTTCCTTCCTGCTTCTCCTACAAGCATGGGACCCACA
TCTCGTACGGCATCACCCTCTTCGTGGACATTCCCAACTGGCCCGACTAC
AAGCTGGCCTTCCCTCTTAAGGTGCACTCCTCGCCCATGCTCATCACACC
GGAAATGCAGAAAGCTGTAGATCGCCGCGATGTCCACGCGGTCACGACCA
AATGCTGCTTCAGCGCGGGTCAAGCCACTCTCAGCCTCTCCGTGCCCAAC
ACCGTCTTCCCCTTCGTAGACGGGACCTCCATTGACCCCTCGTCCTTTCC
GATTTCCCTGGGTGTCGATAACCAGAGCTCGCGCACGATTGAGTGCGTGA
GCCTCTCATTGATGGGAGAGATTTTTATGACTACCGTCAATGACCCTGCC
AAAACTGCGCGACAGTGTCGCATTCCCTTCCTTGTCGCTGGCATCCCCAT
CGTCCAAAACCTCCTTCCTGGCGCTTGCCTCCCCGTCCAGCCTGTCGTCA
ACTTCCCTCCTCTTTTCCTGCGCTGGAACCCGAAAATCAATGTCGCCGAA
CATGACAGCACGCCCTCCAGCTTCAGCACCATCCAGATGCCCACCACAAC
GGCAGGGCATATTCTCAAGGTCTCCTACAAGTTGGTGCTCACCGCCCAGA
TTGGCTGTATTTATGCGCTCGAGCTCGCGGTGCCCATCACATTCGCAGCG
TCCCTTCCCCTCCCCCTCGCCCCCCCCATCCCGAAGTCGGCCCCGGACGA
CTACGAAGGTATGCCCCCCTCCGCTCCACCTATGCAGGACGGTGCTGGGA
TCGTGGCCCCCGCCTATGACCTCGTCTCCCACACTTCCTCCGCCTACCTC
ACCCCATACGTCAATACTGGCCAAAAATAG
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Synonyms
Publications