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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:1250298..1252765 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G04270.1 vs.
Match: EWM26911.1 (Arrestin [Nannochloropsis gaditana]) HSP 1 Score: 282.3 bits (721), Expect = 2.600e-72 Identity = 157/381 (41.21%), Postives = 226/381 (59.32%), Query Frame = 0
Query: 37 ASYGTPPSSSNSVPHQYPP---QELYVNDSTLSQVASAKNGITLWLSKTEFHPGEIIGGKMRATFAKRTTAKSVCARLSCGAGVEWSTGSGERSVVHKAYTALAPPITVILQEN--QGQSFFLEPHRPYEWAFQITLPPDLPSCFSYKHG-------THISYGITLFVDIPNWPDYKLAFPLKVHSSPMLITPEMQKAVDRRDVHAVTTKCC-FSAGQATLSLSVPNTVFPFVDGTSIDPSSFPISLGVDNQSSRTIECVSLSLMGEIFMTTVNDPAKTARQCRIPFLVAGIPIVQNLLPGACLPVQPVVNFPPLFLRWNPKINVAE-HDSTPSSFSTIQMPTTTAGHILKVSYKLVLTAQIGCIYALELAVPITFAASLP 404
ASY P +++V PP Q++ ++D L +VA K+GI+LWL KT+F+PG+ + GKM+A + T ++V A+L+ A W+ SGE S + A LAP + ++LQE G +F LE R YEW Q LPP LPS F +K G THI++ +TL +DIP WPD KL + L+VH +P ITP MQ+ V+ R+ +++ CC F G+A L L+VP TV PF DG+S+ P+ FPIS+GV+N S RT+ V L+L+GEI +T + PF VA + +LPG L + V FP L L+WNP ++A P + +QMP+ AG++ ++ Y L LTA+ C + +L+VPITF S P
Sbjct: 76 ASYDMP--IAHAVAASSPPFSIQQIPLDDFALRKVAFTKSGISLWLPKTDFYPGDTVIGKMKAKLTSKKTIRAVKAKLNSEAVASWTESSGEHSSTYYAALELAPTVELVLQEGTPSGSTFVLERRREYEWVVQFVLPPSLPSSFRFKKGTHIHKSDTHIAHMLTLSLDIPYWPDCKLEYFLRVHCTPEAITPAMQRPVELRESRPISSCCCFFRKGEANLQLAVPITVLPFSDGSSVTPTDFPISVGVENVSKRTLTDVRLALVGEIVLTGSRAFSTHEATRSYPFTVAEHLVASKVLPGTSLALHAVTTFPTLLLQWNPDFDIAFCRSRKPKKLNIVQMPSFVAGNVFQIKYHLELTAKSACSHVPDLSVPITFVPSHP 454
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G04270.1 ID=NO08G04270.1|Name=NO08G04270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1380bp ATGGCCTACCCTAACTCATATGTGCCGACAACAACTTCAAAAATTCCCAA CGACTACTACACTGGGACTGGTCTTGCGTCCTCCTCCTACGGCAGGCCAG ACAGGCTTGCTTCCTACGGCACGCCGCCCTCCTCTTCCAATTCCGTGCCC CATCAATACCCACCGCAGGAGCTTTATGTCAATGATAGCACATTGTCTCA AGTGGCTTCCGCCAAGAATGGCATCACCCTCTGGCTGTCTAAGACGGAGT TTCATCCTGGTGAAATAATTGGGGGCAAGATGCGGGCGACCTTTGCCAAG AGGACAACGGCGAAATCTGTGTGCGCGAGACTCTCGTGCGGCGCGGGTGT AGAGTGGTCGACCGGCTCGGGGGAACGAAGCGTCGTTCACAAGGCTTACA CTGCCTTGGCTCCTCCCATCACCGTGATATTACAAGAGAATCAGGGACAA TCCTTTTTTTTGGAACCCCACCGGCCGTACGAGTGGGCGTTTCAGATCAC CCTTCCCCCCGACCTTCCTTCCTGCTTCTCCTACAAGCATGGGACCCACA TCTCGTACGGCATCACCCTCTTCGTGGACATTCCCAACTGGCCCGACTAC AAGCTGGCCTTCCCTCTTAAGGTGCACTCCTCGCCCATGCTCATCACACC GGAAATGCAGAAAGCTGTAGATCGCCGCGATGTCCACGCGGTCACGACCA AATGCTGCTTCAGCGCGGGTCAAGCCACTCTCAGCCTCTCCGTGCCCAAC ACCGTCTTCCCCTTCGTAGACGGGACCTCCATTGACCCCTCGTCCTTTCC GATTTCCCTGGGTGTCGATAACCAGAGCTCGCGCACGATTGAGTGCGTGA GCCTCTCATTGATGGGAGAGATTTTTATGACTACCGTCAATGACCCTGCC AAAACTGCGCGACAGTGTCGCATTCCCTTCCTTGTCGCTGGCATCCCCAT CGTCCAAAACCTCCTTCCTGGCGCTTGCCTCCCCGTCCAGCCTGTCGTCA ACTTCCCTCCTCTTTTCCTGCGCTGGAACCCGAAAATCAATGTCGCCGAA CATGACAGCACGCCCTCCAGCTTCAGCACCATCCAGATGCCCACCACAAC GGCAGGGCATATTCTCAAGGTCTCCTACAAGTTGGTGCTCACCGCCCAGA TTGGCTGTATTTATGCGCTCGAGCTCGCGGTGCCCATCACATTCGCAGCG TCCCTTCCCCTCCCCCTCGCCCCCCCCATCCCGAAGTCGGCCCCGGACGA CTACGAAGGTATGCCCCCCTCCGCTCCACCTATGCAGGACGGTGCTGGGA TCGTGGCCCCCGCCTATGACCTCGTCTCCCACACTTCCTCCGCCTACCTC ACCCCATACGTCAATACTGGCCAAAAATAG back to topprotein sequence of NO08G04270.1 >NO08G04270.1-protein ID=NO08G04270.1-protein|Name=NO08G04270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=460bp MAYPNSYVPTTTSKIPNDYYTGTGLASSSYGRPDRLASYGTPPSSSNSVP HQYPPQELYVNDSTLSQVASAKNGITLWLSKTEFHPGEIIGGKMRATFAK RTTAKSVCARLSCGAGVEWSTGSGERSVVHKAYTALAPPITVILQENQGQ SFFLEPHRPYEWAFQITLPPDLPSCFSYKHGTHISYGITLFVDIPNWPDY KLAFPLKVHSSPMLITPEMQKAVDRRDVHAVTTKCCFSAGQATLSLSVPN TVFPFVDGTSIDPSSFPISLGVDNQSSRTIECVSLSLMGEIFMTTVNDPA KTARQCRIPFLVAGIPIVQNLLPGACLPVQPVVNFPPLFLRWNPKINVAE HDSTPSSFSTIQMPTTTAGHILKVSYKLVLTAQIGCIYALELAVPITFAA SLPLPLAPPIPKSAPDDYEGMPPSAPPMQDGAGIVAPAYDLVSHTSSAYL TPYVNTGQK* back to topmRNA from alignment at chr8:1250298..1252765+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G04270.1 ID=NO08G04270.1|Name=NO08G04270.1|organism=Nannochloropsis oceanica|type=mRNA|length=2468bp|location=Sequence derived from alignment at chr8:1250298..1252765+ (Nannochloropsis oceanica) ATGGCCTACCCTAACTCATATGTGCCGACAACAACTTCAAAAATTCCCAA
CGACTACTACACTGGGACTGGTCTTGCGTCCTCCTCCTACGGCAGGCCAG
ACAGGCTTGCTTCCTACGGCACGCCGCCCTCCTCTTCCAATTCCGTGCCC
CATCAATACCCACCGCAGGAGCTTTATGTCAATGATAGCACATTGGTAAG
TATGTTGTGGCCTTTCTCGGTGCATCGAAATTCATGTGACGTGCAGTGTA
TTAAAAATCCATTTATGAGTGCTCTTTAATTACTCCCCTCACCTCACTCC
CTTCATAGTCTCAAGTGGCTTCCGCCAAGAATGGCATCACCCTCTGGCTG
TCTAAGACGGAGTTTCATCCTGGTGAAATAATTGGGGGCAAGATGCGGGC
GACCTTTGCCAAGAGGACAACGGCGAAATCTGTGTGCGCGAGAGTAAGCA
GGGACAGGAGGGAAAGAGGGAGGCAAGGAGAATGTCTGGTGGAATATTCA
AAAGCCAATCTCACGTCTACAGAAAACGAACAGTCGGCCGAAGATAGGAC
TCGATGAAGCAATTTCCATGTTGTTTTCCCCATCCCTCTTTCACACATTC
CCTTTTCCGCCATCTTCTGCCCTCTCTCGCCCTCTCCCTCCCTCTCCCTC
CATTAGCTCTCGTGCGGCGCGGGTGTAGAGTGGTCGACCGGCTCGGGGGA
ACGAAGCGTCGTTCACAAGGCTTACACTGCCTTGGCTCCTCCCATCACCG
TGATATTACAAGAGAATCAGGGACAATCCTTTTTTTTGGAACCCCACCGG
CCGTACGAGTGGGCGGTATGTCGGGAGGAATGGAGGGAAGGAGATAGGAA
TTGGGCAGACACAGGGATGAGAACAGCAACTCATTACGTCACCACCAGAG
CATGATTTTCATTCCTTCCTTCCCCCCCACGATAGTTTCAGATCACCCTT
CCCCCCGACCTTCCTTCCTGCTTCTCCTACAAGCATGGGACCCACATCTC
GTACGGCATCACCCTCTTCGTGGACATTCCCAACTGGCCCGACTACAAGC
TGGCCTTCCCTCTTAAGGTGCACTCCTCGCCCATGCTCATCACACCGGTA
TTCGGGGCGGGGGGAGAGAAGGAGGAAGGGAGGAAGGCTGCGTGTAGGTC
TCATGTCATAGCTCCACATTCACCCTATCTTTCATCCTGCCCTCCCTTCA
ACTCGCAGGAAATGCAGAAAGCTGTAGATCGCCGCGATGTCCACGCGGTC
ACGACCAAATGCTGCTTCAGCGCGGTAGGAAGAGAGAAAAGGGAAAAAGG
GTGTTGAGAAGGAGAAGAAAAGATTTTAAGACTACATGATGGAGACGACA
AAGTTCACTCTTGTTTTTCCCCTCCCCCCTTTTCTTTCTTCCTACTTCCC
AAGGGTCAAGCCACTCTCAGCCTCTCCGTGCCCAACACCGTCTTCCCCTT
CGTAGACGGGACCTCCATTGACCCCTCGTCCTTTCCGATTTCCCTGGGTG
TCGATAACCAGAGCTCGCGCACGATTGAGTGCGTGAGCCTCTCATTGATG
GGAGGTAAGAAAGAGGCCACATCCTGGGAATCAAATGTAATCCTCGATTA
CTCACTCTCCGTCCCTTTCTCCCTACGTCCCCTCCAGAGATTTTTATGAC
TACCGTCAATGACCCTGCCAAAACTGCGCGACAGTGTCGCATTCCCTTCC
TTGTCGCTGGCATCCCCATCGTCCAAAACCTCCTTCCTGGCGCTTGCCTC
CCCGTCCAGCCTGTCGTCAACTTCCCTCCTCTTTTCCTGCGCTGGAACCC
GAAAATCAATGTCGCCGAACATGACAGCACGCCCTCCAGCTTCAGCACCA
TCCAGATGCCCACCACAACGGCAGGGCATATTCTCAAGGTCGGTGCCCGA
GAGGAGGATAAGAGGAGAGAGATAGATAGATAGAGGGAATGCGAACGTAA
CCGGATAGACAACGATTTCTCTTGTTTGAAGATGATTACATCGTTCTTAT
CTTCGTTCCATCTTCTCGATTCGTCGTTTTCTCATCTCTCATTTATTCTT
CGTTCTCTCTTCACAGGTCTCCTACAAGTTGGTGCTCACCGCCCAGATTG
GCTGTATTTATGCGCTCGAGCTCGCGGTGCCCATCACATTCGCAGCGTCC
CTTCCCCTCCCCCTCGCCCCCCCCATCCCGAAGTCGGCCCCGGACGACTA
CGAAGGTATGCCCCCCTCCGCTCCACCTATGCAGGACGGTGGTGAGTGAT
GGGGTGAGGGAGGGAAGGACTGAAAGGAACGGACTTGCCAGCTGTCCAAT
TTGACACTGTGATGTCAACAGGTCGCACATGCAGACAAGACTTAATTGAT
CCCTACACAATCCCTCTTACACATTCGCACAGCTGGGATCGTGGCCCCCG
CCTATGACCTCGTCTCCCACACTTCCTCCGCCTACCTCACCCCATACGTC
AATACTGGCCAAAAATAG back to topCoding sequence (CDS) from alignment at chr8:1250298..1252765+ >NO08G04270.1 ID=NO08G04270.1|Name=NO08G04270.1|organism=Nannochloropsis oceanica|type=CDS|length=1380bp|location=Sequence derived from alignment at chr8:1250298..1252765+ (Nannochloropsis oceanica) ATGGCCTACCCTAACTCATATGTGCCGACAACAACTTCAAAAATTCCCAA CGACTACTACACTGGGACTGGTCTTGCGTCCTCCTCCTACGGCAGGCCAG ACAGGCTTGCTTCCTACGGCACGCCGCCCTCCTCTTCCAATTCCGTGCCC CATCAATACCCACCGCAGGAGCTTTATGTCAATGATAGCACATTGTCTCA AGTGGCTTCCGCCAAGAATGGCATCACCCTCTGGCTGTCTAAGACGGAGT TTCATCCTGGTGAAATAATTGGGGGCAAGATGCGGGCGACCTTTGCCAAG AGGACAACGGCGAAATCTGTGTGCGCGAGACTCTCGTGCGGCGCGGGTGT AGAGTGGTCGACCGGCTCGGGGGAACGAAGCGTCGTTCACAAGGCTTACA CTGCCTTGGCTCCTCCCATCACCGTGATATTACAAGAGAATCAGGGACAA TCCTTTTTTTTGGAACCCCACCGGCCGTACGAGTGGGCGTTTCAGATCAC CCTTCCCCCCGACCTTCCTTCCTGCTTCTCCTACAAGCATGGGACCCACA TCTCGTACGGCATCACCCTCTTCGTGGACATTCCCAACTGGCCCGACTAC AAGCTGGCCTTCCCTCTTAAGGTGCACTCCTCGCCCATGCTCATCACACC GGAAATGCAGAAAGCTGTAGATCGCCGCGATGTCCACGCGGTCACGACCA AATGCTGCTTCAGCGCGGGTCAAGCCACTCTCAGCCTCTCCGTGCCCAAC ACCGTCTTCCCCTTCGTAGACGGGACCTCCATTGACCCCTCGTCCTTTCC GATTTCCCTGGGTGTCGATAACCAGAGCTCGCGCACGATTGAGTGCGTGA GCCTCTCATTGATGGGAGAGATTTTTATGACTACCGTCAATGACCCTGCC AAAACTGCGCGACAGTGTCGCATTCCCTTCCTTGTCGCTGGCATCCCCAT CGTCCAAAACCTCCTTCCTGGCGCTTGCCTCCCCGTCCAGCCTGTCGTCA ACTTCCCTCCTCTTTTCCTGCGCTGGAACCCGAAAATCAATGTCGCCGAA CATGACAGCACGCCCTCCAGCTTCAGCACCATCCAGATGCCCACCACAAC GGCAGGGCATATTCTCAAGGTCTCCTACAAGTTGGTGCTCACCGCCCAGA TTGGCTGTATTTATGCGCTCGAGCTCGCGGTGCCCATCACATTCGCAGCG TCCCTTCCCCTCCCCCTCGCCCCCCCCATCCCGAAGTCGGCCCCGGACGA CTACGAAGGTATGCCCCCCTCCGCTCCACCTATGCAGGACGGTGCTGGGA TCGTGGCCCCCGCCTATGACCTCGTCTCCCACACTTCCTCCGCCTACCTC ACCCCATACGTCAATACTGGCCAAAAATAG back to top
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