NO08G04080, NO08G04080 (gene) Nannochloropsis oceanica

Overview
NameNO08G04080
Unique NameNO08G04080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1831
Alignment locationchr8:1164736..1166566 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1164736..1166566 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR001012UBX_dom
Homology
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BLAST of NO08G04080 vs. NCBI_GenBank
Match: XP_005854599.1 (hypothetical protein NGA_0195600 [Nannochloropsis gaditana CCMP526] >EKU21765.1 hypothetical protein NGA_0195600 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 94.4 bits (233), Expect = 7.000e-16
Identity = 71/187 (37.97%), Postives = 103/187 (55.08%), Query Frame = 0 
Query:   84 QDLGRLLKEQELRALAKLEAAAQALLESETEVDALGIRRPLDRHISFMPSSSTADRRKAVHAAEEEMEKQGRPCSKG-GETHERETITNIA--AMNEVDEYVSPAVDRQLLQQAYQTRRARVEELSQFRSRRGKQRRDASRNGGKLYQPPLKPPTAKTVPTTLLLLLRIKFPDGAILTARFYEGEHV 268
            ++LGR+L+E++ RALA+   A +   + ETE+DA GIRRP DR +SF P+ +      + H  E       RP  KG  +T  R  I  +A   M   +E    A+DR +L++AY+ RRA+VE LS+F+S+R +  R + +                    T  + +R+KFPDGA LTARF EGE V
Sbjct:   79 RELGRMLEEEKTRALAQEREADERRFQFETEMDAEGIRRPRDRKLSFTPAPAFL---SSSHVRE-------RPGGKGSADTKARMNIEPMATGGMAAAEEEGELAIDRHMLRKAYEVRRAQVESLSRFQSKRKRHGRQSGQT------------------RTSFVRVRVKFPDGAALTARFCEGEKV 237
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BLAST of NO08G04080 vs. NCBI_GenBank
Match: EWM26876.1 (hypothetical protein Naga_100576g2 [Nannochloropsis gaditana])

HSP 1 Score: 74.3 bits (181), Expect = 7.500e-10
Identity = 55/143 (38.46%), Postives = 84/143 (58.74%), Query Frame = 0 
Query:   84 QDLGRLLKEQELRALAKLEAAAQALLESETEVDALGIRRPLDRHISFMPSSSTADRRKAVHAAEEEMEKQGRPCSKG-GETHERETITNIA--AMNEVDEYVSPAVDRQLLQQAYQTRRARVEELSQFRSRRGKQRRDASRNG 224
            ++LGR+L+E++ RALA+   A +   + ETE+DA GIRRP DR +SF P+ +      + H  E       RP  KG  +T  R  I  +A   M   +E    A+DR +L++AY+ RRA+VE LS+F+S+R +  R + + G
Sbjct:   79 RELGRMLEEEKTRALAQEREADERRFQFETEMDAEGIRRPRDRKLSFTPAPAFL---SSSHVRE-------RPGGKGSADTKARMNIEPMATGGMAAAEEEGELAIDRHMLRKAYEVRRAQVESLSRFQSKRKRHGRQSGQVG 211
The following BLAST results are available for this feature:
BLAST of NO08G04080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005854599.17.000e-1637.97hypothetical protein NGA_0195600 [Nannochloropsis ... [more]
EWM26876.17.500e-1038.46hypothetical protein Naga_100576g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100576g2gene3664Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G04080.5NO08G04080.5Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO08G04080.4NO08G04080.4Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO08G04080.3NO08G04080.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO08G04080.2NO08G04080.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO08G04080.1NO08G04080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G04080.5NO08G04080.5-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO08G04080.4NO08G04080.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO08G04080.3NO08G04080.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO08G04080.2NO08G04080.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO08G04080.1NO08G04080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G04080 ID=NO08G04080|Name=NO08G04080|organism=Nannochloropsis oceanica|type=gene|length=1831bp
TTCCGCAAAGACCAAGCATTCGCAAACCCTCCCATGTTGTCTCACAAGGT
CACTACTCACGTGTCTCCTCCTTTTGCACCCTCTCCTTATCACAGACATG
CTTGTGGCGGGCGGAAGAAGCCAAATGTGCCGCTGCCCGTTCGCCTCCCG
TCTTTCCGAGTCCTTTCCCCTCCCCTTCCTCGTCGGAGTAGGCCTCGTGC
TCCTCGTCCTCGTCCTCTCCCCTTTGCCGACCGAAAGCCATGCGCTGGCA
CCTCCAACTGCCTCTTCATCGTCCTTATCATCGTCTTCTCCAGCTTCCGG
ACGTCCCCTCCCTCCTCCTCGCTCAACCCCCCCCCCATTAAAAGTCCAAG
ACCTCGGCCGACTATTGAAGGAGCAAGAACTTCGAGCACTTGCCAAGCTA
GAAGCCGCTGCCCAAGCCCTTCTGGAAAGCGAGACGGAGGTAGATGCTCT
CGGCATCCGTCGTCCACTCGACCGGCATATTTCATTCATGCCCTCGTCGT
CTACTGCAGACAGACGGAAGGCAGTACATGCAGCAGAGGAGGAAATGGAA
AAGCAGGGCCGACCGTGTTCTAAAGGAGGAGAAACCCACGAGAGGGAGAC
GATCACAAATATAGCAGCAATGAATGAAGTCGACGAGTACGTAAGTCCGG
CGGTGGACAGGCAATTGCTGCAACAGGCGTACCAGACACGAAGGGCACGT
GTGGAGGAGCTTTCGCAGTTTCGATCGCGGCGGGGGAAGCAGAGGCGTGA
CGCCAGCAGGAATGGCGGAAAGgtaattgaaatccatgacaaaaggaaag
cgatagacaggtagaaggagtgaatggtggcttggagggatgtgactaca
tttccgatgggggcaactttacgatttttatcctcttgacgttctcgcca
agcctcaagcatatcctctctccctctcctttccacctatagCTCTATCA
GCCCCCGCTTAAACCACCGACAGCGAAAACAGTACCGACCACCCTGCTGC
TACTCCTGCGGATTAAGTTCCCGGACGGCGCCATCTTGACGGCCCGCTTT
TACGAGGGGGAGCACGTGGCGgtgcgtggggttggggatgggaggtggga
agaaaggataacagaggggaaggaggaggaagaggaggcgaaagagaacg
aagagggaggagggagagaagggaaaaaaaaaggtagagatgatcacgtc
atcgtgaagaatctcggtttgtagtttctcctgctactgcattttcatac
atccctgttttcttatccgtactttttttttatctttccccttttcccaa
ttctaaagGACGTTTTTACCCTCCTTCGCACCGCCCTCTCCCTTGCACCT
CTCCCTCCGCAATTCGTCCTCCTCAATCTAGGGGGAATGGGGCCTCGACG
TCTGTCGGCAGGGGAGGGGAAGTCGACAATAATGAACATGACGCTCAAGG
CCTGCGGGCTCACGGCGCCCGCGGCGACGCTGTTGTTGCAATGGCAAAGG
GAAAGTAGGGCTGCTGTACCCAAGgtaagagggaggcaaaaagagggtgg
aagagaaggaggaggagggctgtggagttcaggaaagtatcggctgggag
gatcaggatacgagacaagaacgagacatgaaagcggcgggagacgcgaa
aataaagccactgcagaaatatggtcacgtctctttttccacttctttac
agGATACGATCGAGTGGATTGACCCAGCCCTGCTGCACGCCTCCGGGAGA
GATAAATAGGCGAAGGGGATGCAAGAGACAGGAAGGAACTGATACCACTT
TGTAGAAAGAAATATTGAACATACCGATGAT
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protein sequence of NO08G04080.5

>NO08G04080.5-protein ID=NO08G04080.5-protein|Name=NO08G04080.5|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp
MLVAGGRSQMCRCPFASRLSESFPLPFLVGVGLVLLVLVLSPLPTESHAL
APPTASSSSLSSSSPASGRPLPPPRSTPPPLKVQDLGRLLKEQELRALAK
LEAAAQALLESETEVDALGIRRPLDRHISFMPSSSTADRRKAVHAAEEEM
EKQGRPCSKGGETHERETITNIAAMNEVDEYVSPAVDRQLLQQAYQTRRA
RVEELSQFRSRRGKQRRDASRNGGKVIEIHDKRKAIDSSISPRLNHRQRK
QYRPPCCYSCGLSSRTAPS*
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protein sequence of NO08G04080.4

>NO08G04080.4-protein ID=NO08G04080.4-protein|Name=NO08G04080.4|organism=Nannochloropsis oceanica|type=polypeptide|length=319bp
MLVAGGRSQMCRCPFASRLSESFPLPFLVGVGLVLLVLVLSPLPTESHAL
APPTASSSSLSSSSPASGRPLPPPRSTPPPLKVQDLGRLLKEQELRALAK
LEAAAQALLESETEVDALGIRRPLDRHISFMPSSSTADRRKAVHAAEEEM
EKQGRPCSKGGETHERETITNIAAMNEVDEYVSPAVDRQLLQQAYQTRRA
RVEELSQFRSRRGKQRRDASRNGGKLYQPPLKPPTAKTVPTTLLLLLRIK
FPDGAILTARFYEGEHVAVRGVGDGRWEERITEGKEEEEEAKENEEGGGR
EGKKKGRDDHVIVKNLGL*
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protein sequence of NO08G04080.3

>NO08G04080.3-protein ID=NO08G04080.3-protein|Name=NO08G04080.3|organism=Nannochloropsis oceanica|type=polypeptide|length=319bp
MLVAGGRSQMCRCPFASRLSESFPLPFLVGVGLVLLVLVLSPLPTESHAL
APPTASSSSLSSSSPASGRPLPPPRSTPPPLKVQDLGRLLKEQELRALAK
LEAAAQALLESETEVDALGIRRPLDRHISFMPSSSTADRRKAVHAAEEEM
EKQGRPCSKGGETHERETITNIAAMNEVDEYVSPAVDRQLLQQAYQTRRA
RVEELSQFRSRRGKQRRDASRNGGKLYQPPLKPPTAKTVPTTLLLLLRIK
FPDGAILTARFYEGEHVAVRGVGDGRWEERITEGKEEEEEAKENEEGGGR
EGKKKGRDDHVIVKNLGL*
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protein sequence of NO08G04080.2

>NO08G04080.2-protein ID=NO08G04080.2-protein|Name=NO08G04080.2|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MLVAGGRSQMCRCPFASRLSESFPLPFLVGVGLVLLVLVLSPLPTESHAL
APPTASSSSLSSSSPASGRPLPPPRSTPPPLKVQDLGRLLKEQELRALAK
LEAAAQALLESETEVDALGIRRPLDRHISFMPSSSTADRRKAVHAAEEEM
EKQGRPCSKGGETHERETITNIAAMNEVDEYVSPAVDRQLLQQAYQTRRA
RVEELSQFRSRRGKQRRDASRNGGKLYQPPLKPPTAKTVPTTLLLLLRIK
FPDGAILTARFYEGEHVADVFTLLRTALSLAPLPPQFVLLNLGGMGPRRL
SAGEGKSTIMNMTLKACGLTAPAATLLLQWQRESRAAVPKDTIEWIDPAL
LHASGRDK*
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protein sequence of NO08G04080.1

>NO08G04080.1-protein ID=NO08G04080.1-protein|Name=NO08G04080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp
MLVAGGRSQMCRCPFASRLSESFPLPFLVGVGLVLLVLVLSPLPTESHAL
APPTASSSSLSSSSPASGRPLPPPRSTPPPLKVQDLGRLLKEQELRALAK
LEAAAQALLESETEVDALGIRRPLDRHISFMPSSSTADRRKAVHAAEEEM
EKQGRPCSKGGETHERETITNIAAMNEVDEYVSPAVDRQLLQQAYQTRRA
RVEELSQFRSRRGKQRRDASRNGGKVIEIHDKRKAIDSSISPRLNHRQRK
QYRPPCCYSCGLSSRTAPS*
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Synonyms
Publications