|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:1164736..1166566 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G04080.2 vs.
Match: XP_005854599.1 (hypothetical protein NGA_0195600 [Nannochloropsis gaditana CCMP526]; EKU21765.1 hypothetical protein NGA_0195600 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 144.4 bits (363), Expect = 6.700e-31 Identity = 114/304 (37.50%), Postives = 163/304 (53.62%), Query Frame = 0
Query: 44 PTESHALAPPTASSSSLSSSSPASGRPLPPPRSTPPPLKVQDLGRLLKEQELRALAKLEAAAQALLESETEVDALGIRRPLDRHISFMPSSSTADRRKAVHAAEEEMEKQGRPCSKGG-ETHERETITNIAA--MNEVDEYVSPAVDRQLLQQAYQTRRARVEELSQFRSRRGKQRRDASRNGGKLYQPPLKPPTAKTVPTTLLLLLRIKFPDGAILTARFYEGEHVADVFTLLRTAL----SLAPLPPQFVLLNLGGMGPRRLSAGEGKSTIMNMTLKACGLTAPAATLLLQWQRESRAAVPK 341
PT S + + + SSS S ++ A P PPP S P ++LGR+L+E++ RALA+ A + + ETE+DA GIRRP DR +SF P+ + + H E RP KG +T R I +A M +E A+DR +L++AY+ RRA+VE LS+F+S+R + R + + T + +R+KFPDGA LTARF EGE V D+F +L L + LP F LL+LGG GPRRL ++TL+A GL P A+LL +W++ +PK
Sbjct: 40 PTLSVSCSASSPPSSSSSPTNSAQSSPFPPP-SLPRVRGPRELGRMLEEEKTRALAQEREADERRFQFETEMDAEGIRRPRDRKLSFTPAPAFLS---SSHVRE-------RPGGKGSADTKARMNIEPMATGGMAAAEEEGELAIDRHMLRKAYEVRRAQVESLSRFQSKRKRHGRQSGQT------------------RTSFVRVRVKFPDGAALTARFCEGEKVEDIFRVLDRVLPPSCQSSSLPSSFHLLSLGGKGPRRLIPS------TDVTLRAAGLVGPTASLLFRWEKGEGRLLPK 308
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G04080.2 ID=NO08G04080.2|Name=NO08G04080.2|organism=Nannochloropsis oceanica|type=mRNA|length=1246bp TTCCGCAAAGACCAAGCATTCGCAAACCCTCCCATGTTGTCTCACAAGGT CACTACTCACGTGTCTCCTCCTTTTGCACCCTCTCCTTATCACAGACATG CTTGTGGCGGGCGGAAGAAGCCAAATGTGCCGCTGCCCGTTCGCCTCCCG TCTTTCCGAGTCCTTTCCCCTCCCCTTCCTCGTCGGAGTAGGCCTCGTGC TCCTCGTCCTCGTCCTCTCCCCTTTGCCGACCGAAAGCCATGCGCTGGCA CCTCCAACTGCCTCTTCATCGTCCTTATCATCGTCTTCTCCAGCTTCCGG ACGTCCCCTCCCTCCTCCTCGCTCAACCCCCCCCCCATTAAAAGTCCAAG ACCTCGGCCGACTATTGAAGGAGCAAGAACTTCGAGCACTTGCCAAGCTA GAAGCCGCTGCCCAAGCCCTTCTGGAAAGCGAGACGGAGGTAGATGCTCT CGGCATCCGTCGTCCACTCGACCGGCATATTTCATTCATGCCCTCGTCGT CTACTGCAGACAGACGGAAGGCAGTACATGCAGCAGAGGAGGAAATGGAA AAGCAGGGCCGACCGTGTTCTAAAGGAGGAGAAACCCACGAGAGGGAGAC GATCACAAATATAGCAGCAATGAATGAAGTCGACGAGTACGTAAGTCCGG CGGTGGACAGGCAATTGCTGCAACAGGCGTACCAGACACGAAGGGCACGT GTGGAGGAGCTTTCGCAGTTTCGATCGCGGCGGGGGAAGCAGAGGCGTGA CGCCAGCAGGAATGGCGGAAAGCTCTATCAGCCCCCGCTTAAACCACCGA CAGCGAAAACAGTACCGACCACCCTGCTGCTACTCCTGCGGATTAAGTTC CCGGACGGCGCCATCTTGACGGCCCGCTTTTACGAGGGGGAGCACGTGGC GGACGTTTTTACCCTCCTTCGCACCGCCCTCTCCCTTGCACCTCTCCCTC CGCAATTCGTCCTCCTCAATCTAGGGGGAATGGGGCCTCGACGTCTGTCG GCAGGGGAGGGGAAGTCGACAATAATGAACATGACGCTCAAGGCCTGCGG GCTCACGGCGCCCGCGGCGACGCTGTTGTTGCAATGGCAAAGGGAAAGTA GGGCTGCTGTACCCAAGGATACGATCGAGTGGATTGACCCAGCCCTGCTG CACGCCTCCGGGAGAGATAAATAGGCGAAGGGGATGCAAGAGACAGGAAG GAACTGATACCACTTTGTAGAAAGAAATATTGAACATACCGATGAT back to topprotein sequence of NO08G04080.2 >NO08G04080.2-protein ID=NO08G04080.2-protein|Name=NO08G04080.2|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp MLVAGGRSQMCRCPFASRLSESFPLPFLVGVGLVLLVLVLSPLPTESHAL APPTASSSSLSSSSPASGRPLPPPRSTPPPLKVQDLGRLLKEQELRALAK LEAAAQALLESETEVDALGIRRPLDRHISFMPSSSTADRRKAVHAAEEEM EKQGRPCSKGGETHERETITNIAAMNEVDEYVSPAVDRQLLQQAYQTRRA RVEELSQFRSRRGKQRRDASRNGGKLYQPPLKPPTAKTVPTTLLLLLRIK FPDGAILTARFYEGEHVADVFTLLRTALSLAPLPPQFVLLNLGGMGPRRL SAGEGKSTIMNMTLKACGLTAPAATLLLQWQRESRAAVPKDTIEWIDPAL LHASGRDK* back to topmRNA from alignment at chr8:1164736..1166566- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G04080.2 ID=NO08G04080.2|Name=NO08G04080.2|organism=Nannochloropsis oceanica|type=mRNA|length=1831bp|location=Sequence derived from alignment at chr8:1164736..1166566- (Nannochloropsis oceanica) TTCCGCAAAGACCAAGCATTCGCAAACCCTCCCATGTTGTCTCACAAGGT
CACTACTCACGTGTCTCCTCCTTTTGCACCCTCTCCTTATCACAGACATG
CTTGTGGCGGGCGGAAGAAGCCAAATGTGCCGCTGCCCGTTCGCCTCCCG
TCTTTCCGAGTCCTTTCCCCTCCCCTTCCTCGTCGGAGTAGGCCTCGTGC
TCCTCGTCCTCGTCCTCTCCCCTTTGCCGACCGAAAGCCATGCGCTGGCA
CCTCCAACTGCCTCTTCATCGTCCTTATCATCGTCTTCTCCAGCTTCCGG
ACGTCCCCTCCCTCCTCCTCGCTCAACCCCCCCCCCATTAAAAGTCCAAG
ACCTCGGCCGACTATTGAAGGAGCAAGAACTTCGAGCACTTGCCAAGCTA
GAAGCCGCTGCCCAAGCCCTTCTGGAAAGCGAGACGGAGGTAGATGCTCT
CGGCATCCGTCGTCCACTCGACCGGCATATTTCATTCATGCCCTCGTCGT
CTACTGCAGACAGACGGAAGGCAGTACATGCAGCAGAGGAGGAAATGGAA
AAGCAGGGCCGACCGTGTTCTAAAGGAGGAGAAACCCACGAGAGGGAGAC
GATCACAAATATAGCAGCAATGAATGAAGTCGACGAGTACGTAAGTCCGG
CGGTGGACAGGCAATTGCTGCAACAGGCGTACCAGACACGAAGGGCACGT
GTGGAGGAGCTTTCGCAGTTTCGATCGCGGCGGGGGAAGCAGAGGCGTGA
CGCCAGCAGGAATGGCGGAAAGGTAATTGAAATCCATGACAAAAGGAAAG
CGATAGACAGGTAGAAGGAGTGAATGGTGGCTTGGAGGGATGTGACTACA
TTTCCGATGGGGGCAACTTTACGATTTTTATCCTCTTGACGTTCTCGCCA
AGCCTCAAGCATATCCTCTCTCCCTCTCCTTTCCACCTATAGCTCTATCA
GCCCCCGCTTAAACCACCGACAGCGAAAACAGTACCGACCACCCTGCTGC
TACTCCTGCGGATTAAGTTCCCGGACGGCGCCATCTTGACGGCCCGCTTT
TACGAGGGGGAGCACGTGGCGGTGCGTGGGGTTGGGGATGGGAGGTGGGA
AGAAAGGATAACAGAGGGGAAGGAGGAGGAAGAGGAGGCGAAAGAGAACG
AAGAGGGAGGAGGGAGAGAAGGGAAAAAAAAAGGTAGAGATGATCACGTC
ATCGTGAAGAATCTCGGTTTGTAGTTTCTCCTGCTACTGCATTTTCATAC
ATCCCTGTTTTCTTATCCGTACTTTTTTTTTATCTTTCCCCTTTTCCCAA
TTCTAAAGGACGTTTTTACCCTCCTTCGCACCGCCCTCTCCCTTGCACCT
CTCCCTCCGCAATTCGTCCTCCTCAATCTAGGGGGAATGGGGCCTCGACG
TCTGTCGGCAGGGGAGGGGAAGTCGACAATAATGAACATGACGCTCAAGG
CCTGCGGGCTCACGGCGCCCGCGGCGACGCTGTTGTTGCAATGGCAAAGG
GAAAGTAGGGCTGCTGTACCCAAGGTAAGAGGGAGGCAAAAAGAGGGTGG
AAGAGAAGGAGGAGGAGGGCTGTGGAGTTCAGGAAAGTATCGGCTGGGAG
GATCAGGATACGAGACAAGAACGAGACATGAAAGCGGCGGGAGACGCGAA
AATAAAGCCACTGCAGAAATATGGTCACGTCTCTTTTTCCACTTCTTTAC
AGGATACGATCGAGTGGATTGACCCAGCCCTGCTGCACGCCTCCGGGAGA
GATAAATAGGCGAAGGGGATGCAAGAGACAGGAAGGAACTGATACCACTT
TGTAGAAAGAAATATTGAACATACCGATGAT back to topCoding sequence (CDS) from alignment at chr8:1164736..1166566- >NO08G04080.2 ID=NO08G04080.2|Name=NO08G04080.2|organism=Nannochloropsis oceanica|type=CDS|length=1077bp|location=Sequence derived from alignment at chr8:1164736..1166566- (Nannochloropsis oceanica) ATGCTTGTGGCGGGCGGAAGAAGCCAAATGTGCCGCTGCCCGTTCGCCTC CCGTCTTTCCGAGTCCTTTCCCCTCCCCTTCCTCGTCGGAGTAGGCCTCG TGCTCCTCGTCCTCGTCCTCTCCCCTTTGCCGACCGAAAGCCATGCGCTG GCACCTCCAACTGCCTCTTCATCGTCCTTATCATCGTCTTCTCCAGCTTC CGGACGTCCCCTCCCTCCTCCTCGCTCAACCCCCCCCCCATTAAAAGTCC AAGACCTCGGCCGACTATTGAAGGAGCAAGAACTTCGAGCACTTGCCAAG CTAGAAGCCGCTGCCCAAGCCCTTCTGGAAAGCGAGACGGAGGTAGATGC TCTCGGCATCCGTCGTCCACTCGACCGGCATATTTCATTCATGCCCTCGT CGTCTACTGCAGACAGACGGAAGGCAGTACATGCAGCAGAGGAGGAAATG GAAAAGCAGGGCCGACCGTGTTCTAAAGGAGGAGAAACCCACGAGAGGGA GACGATCACAAATATAGCAGCAATGAATGAAGTCGACGAGTACGTAAGTC CGGCGGTGGACAGGCAATTGCTGCAACAGGCGTACCAGACACGAAGGGCA CGTGTGGAGGAGCTTTCGCAGTTTCGATCGCGGCGGGGGAAGCAGAGGCG TGACGCCAGCAGGAATGGCGGAAAGCTCTATCAGCCCCCGCTTAAACCAC CGACAGCGAAAACAGTACCGACCACCCTGCTGCTACTCCTGCGGATTAAG TTCCCGGACGGCGCCATCTTGACGGCCCGCTTTTACGAGGGGGAGCACGT GGCGGACGTTTTTACCCTCCTTCGCACCGCCCTCTCCCTTGCACCTCTCC CTCCGCAATTCGTCCTCCTCAATCTAGGGGGAATGGGGCCTCGACGTCTG TCGGCAGGGGAGGGGAAGTCGACAATAATGAACATGACGCTCAAGGCCTG CGGGCTCACGGCGCCCGCGGCGACGCTGTTGTTGCAATGGCAAAGGGAAA GTAGGGCTGCTGTACCCAAGGATACGATCGAGTGGATTGACCCAGCCCTG CTGCACGCCTCCGGGAGAGATAAATAG back to top
|