NO08G04010, NO08G04010 (gene) Nannochloropsis oceanica

Overview
NameNO08G04010
Unique NameNO08G04010
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2758
Alignment locationchr8:1124908..1127665 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1124908..1127665 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO08G04010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G04010.2NO08G04010.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO08G04010.1NO08G04010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583250gene_3741Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G04010.2NO08G04010.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO08G04010.1NO08G04010.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G04010 ID=NO08G04010|Name=NO08G04010|organism=Nannochloropsis oceanica|type=gene|length=2758bp
ATAACAGCGTCGCCTGGGGTACCACGAGACGCCGGGATAAATTGTGTAAG
ATAAGGCATGCATATGTACTGATCAATACTACAAGAAGTCGTGGCATTCC
CTGGTCAGTTCGCATGGGGGGTTTTTCCTTGCTCCATCATGTCGGAAGTA
GTACGGCTTCCCGTGCTGGCCGATTCGACTTCTTCGCCTGTCACAATGGC
TACCACTGCCCGTCGTGGCCCCTACCTCCTGATACCACTCTTGGCGATTC
TTGCCTTCTACAGCACTAATTTTGTCTTTGTGTGGAATCAGCAACAACCG
AGAGGCAACTTCCTATCCGGTCTCAACTTCACGTCGTCCCTTTCCCACCT
CCATTTGTCCTCCAATGCTTCCTCTTCCGGCCCTGCACTTTTCCCCTCTT
CTTCCTCTGCGTCTGCTTACGCCTCATTCCCTGCTTCTTCCTCTCAGTCA
GCTCCTGTCTCTCTCCCTGCTACTTCCTCCCTACCCTCCTCCCTCATATC
CTCCTCCTTTCATCCCACGTGTGACTACCCGCTCACTGAAGTAGACCCTT
CCTGCCCCCGCTTCACCAACATCAATCTCATCGCAAAAAGGGGCCTTGGA
GATCGCTTCCTTCAACTTGCTATTGTCATTCTTGTGGCTCTTGACACCGA
CAGTGTCCCCCTCCTTCTGGACATGCACACCGTGAATGGCAAACATGGGA
ACTACACGGGTCTGGAAGACTTCCTCCCCTTCGCCTCTTCGCTTCCCAGG
CTAGAGGATGTAATAGgtaaggtcttctcacccctcatatctcgcttccc
ttgctttctttctttcaccctgttaaactcttgtctccagcatttaaaga
taaatgctcttgtcgattatgggtttacgtctgatccctccctccctccc
tccctcccaccttcctctttacttagAGCACTATCCAACCCTGCGCCGAA
TTAATGCTGACCACCCAGGGAGCTACCGTGATAAGATCACCTGGCTGAAG
GCAGGAGGTAAACTGCAGGAGGGCGGGAAGGAGGGAGGAGAGACAGGGTG
CAACCTTCTCATGACCATTGACATGGACGTGTGCGGTGACTTCCGCGAGG
AAAGTTGTTACTTCCTTGGAGAGCCACAGTATACCCGAATCAGGGACCTA
GTCCGCTGTTGGATGCTTAAATTGAGGCCCGAGGCCATTCCTAGGTTGGT
GTGGAGTGACGCACAAGAGGACGGAAAGGAGGGCGGGGTACGGCAAGAGC
AGCAGCAGCAGCAGGAGGAGGAGGAGGAGCAGCAGTGTTATAATGTGGCA
GTACATTTGCGGATTGGGGATGAAATGCTGCACCAGACAGATGCATTGTT
CTTCGAAAATTTGAAGAAGGGTGTGGGTACGGCGCTGGTGGGGTTTGACT
GCATGCACTATCACTTTTTCTACGAGGAAGATGCGATTATCGAGTTGGAA
AAGGCCACGGAGGAGAAAAGGAATGCAGAAATCTTCAAACAGGAGCACAA
AGCGAAACTTCAAAAGGAGAAGGAAAAGAAGGAGGCGGTTGCGGCACAAG
GAGAGAAGCAAGAACAGGATGAGGAGAAGAATAATAAGGACGAAAAGTTG
GAGGAGGTGGTGGTGGTAGAAAGAGAAGGGGACGAGCAGATTGAAGAGGA
GTCGACTGCGAAAATAACGGACGAGGAGGAGGTAGAGGACAAGGAGATGG
TGGTGCTAGAAAAGAACAAGGAAGAGCAGGTTGAAGAGGCGGAGGTGGTC
GTGAAGAAGGGGGAAAGAATAAATAAGAGTAGATCGGTGGGTCAGGGGGC
ACCATTTCCCATTTTAACGGATATTTTCAGGGAGGAGATAGCCATAGTAG
AGGAATCAGTGGTGAACAGAGTGAAGAAGGAGAAGGAAAGTAGGCAAGAA
GGGAGGGAAGAGGAGGGGCTGAGAAAAGAAGGAGAGGAGGAGAGTGGGAT
CGAAGGGGCAATGGGAATTGCCAATAATACTTATCAAACCAGgtaggttt
gccttccctccctatctcgcttcatccctgcgcgtcccccatattccatg
cccccttcgactccatccttactgttgctaattggatgaaacatgtggct
ggcccttatcggagaaccatggcatttcatgtaatcttgtcaacaccaga
tgatttctcttccccctcccctcccttctgtcctcgctccctccctcatc
tttccaacagGACAATACGAAAACAACGTATCCGGGTATCCTACCACGGC
AGAATGGATGTCCGCAGCACCCTCTACCACTTCATGGATGCGGACATGTT
GGTTTTGACAGGTTCTTCATTCCCTTACATGGCAGCGCTGGTCACCCCAA
AGCCCGTCATTCTGATGGCCCAGCCAAAGGAGGCATCACGACAAGGGCCA
CGGGGTGAAGGGACTGTGGGGGGCACATGGTTCGGAGGGTACGGAATCGG
AGGGAGAACCGGAGGTATTGCCCTGCTGTCGGAGCAAGGGAACGTGATCA
GCCCGGAGACGGACACGGAGTGGAGAGCAATGGTCGAGATGAAATATTTG
GATTCGGCGGGGCGAAGGGTGCCGTACGTGTAGAAATAGAAATAGAAAAA
AATATAAAAAAGAAATGAGAAATTAAGAAATAGGGGTAGGGAGTAGGTAG
GAAGAGGAAATTTGACGGGACTCGTGGTCAAAACGTAAATTGTGAGATTT
TATGTTCGGTATGGAAATGACATTACAATAATAAATAAATAAATAATTAA
TGCTGACG
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protein sequence of NO08G04010.2

>NO08G04010.2-protein ID=NO08G04010.2-protein|Name=NO08G04010.2|organism=Nannochloropsis oceanica|type=polypeptide|length=566bp
MSEVVRLPVLADSTSSPVTMATTARRGPYLLIPLLAILAFYSTNFVFVWN
QQQPRGNFLSGLNFTSSLSHLHLSSNASSSGPALFPSSSSASAYASFPAS
SSQSAPVSLPATSSLPSSLISSSFHPTCDYPLTEVDPSCPRFTNINLIAK
RGLGDRFLQLAIVILVALDTDSVPLLLDMHTVNGKHGNYTGLEDFLPFAS
SLPRLEDVIEHYPTLRRINADHPGSYRDKITWLKAGGKLQEGGKEGGETG
CNLLMTIDMDVCGDFREESCYFLGEPQYTRIRDLVRCWMLKLRPEAIPRL
VWSDAQEDGKEGGVRQEQQQQQEEEEEQQCYNVAVHLRIGDEMLHQTDAL
FFENLKKGVGTALVGFDCMHYHFFYEEDAIIELEKATEEKRNAEIFKQEH
KAKLQKEKEKKEAVAAQGEKQEQDEEKNNKDEKLEEVVVVEREGDEQIEE
ESTAKITDEEEVEDKEMVVLEKNKEEQVEEAEVVVKKGERINKSRSVGQG
APFPILTDIFREEIAIVEESVVNRVKKEKESRQEGREEEGLRKEGEEESG
IEGAMGIANNTYQTR*
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protein sequence of NO08G04010.1

>NO08G04010.1-protein ID=NO08G04010.1-protein|Name=NO08G04010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=689bp
MSEVVRLPVLADSTSSPVTMATTARRGPYLLIPLLAILAFYSTNFVFVWN
QQQPRGNFLSGLNFTSSLSHLHLSSNASSSGPALFPSSSSASAYASFPAS
SSQSAPVSLPATSSLPSSLISSSFHPTCDYPLTEVDPSCPRFTNINLIAK
RGLGDRFLQLAIVILVALDTDSVPLLLDMHTVNGKHGNYTGLEDFLPFAS
SLPRLEDVIEHYPTLRRINADHPGSYRDKITWLKAGGKLQEGGKEGGETG
CNLLMTIDMDVCGDFREESCYFLGEPQYTRIRDLVRCWMLKLRPEAIPRL
VWSDAQEDGKEGGVRQEQQQQQEEEEEQQCYNVAVHLRIGDEMLHQTDAL
FFENLKKGVGTALVGFDCMHYHFFYEEDAIIELEKATEEKRNAEIFKQEH
KAKLQKEKEKKEAVAAQGEKQEQDEEKNNKDEKLEEVVVVEREGDEQIEE
ESTAKITDEEEVEDKEMVVLEKNKEEQVEEAEVVVKKGERINKSRSVGQG
APFPILTDIFREEIAIVEESVVNRVKKEKESRQEGREEEGLRKEGEEESG
IEGAMGIANNTYQTRTIRKQRIRVSYHGRMDVRSTLYHFMDADMLVLTGS
SFPYMAALVTPKPVILMAQPKEASRQGPRGEGTVGGTWFGGYGIGGRTGG
IALLSEQGNVISPETDTEWRAMVEMKYLDSAGRRVPYV*
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Synonyms
Publications